Wall clock time and date at job start Tue Mar 31 2020 14:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.53012 * 109.47072 * 240.00469 * 2 1 3 5 5 Cl 1.80295 * 109.46737 * 59.99845 * 4 2 1 6 6 C 1.53004 * 109.47479 * 120.00643 * 2 1 3 7 7 S 1.81397 * 109.46710 * 300.00095 * 6 2 1 8 8 O 1.42094 * 110.54847 * 68.37380 * 7 6 2 9 9 O 1.42100 * 110.54098 * 291.62212 * 7 6 2 10 10 N 1.65598 * 104.44686 * 180.02562 * 7 6 2 11 11 C 1.46968 * 120.59467 * 90.00063 * 10 7 6 12 12 C 1.53376 * 108.63322 * 124.74992 * 11 10 7 13 13 N 1.46965 * 108.63589 * 49.42671 * 12 11 10 14 14 C 1.36936 * 120.59526 * 124.74948 * 13 12 11 15 15 H 1.07998 * 120.00072 * 332.32056 * 14 13 12 16 16 C 1.38813 * 119.99891 * 152.31964 * 14 13 12 17 17 N 1.31612 * 119.99978 * 159.33119 * 16 14 13 18 18 Si 1.86801 * 120.00127 * 339.33749 * 16 14 13 19 19 H 1.48504 * 109.47162 * 93.69187 * 18 16 14 20 20 H 1.48493 * 109.47071 * 213.69259 * 18 16 14 21 21 H 1.48503 * 109.47223 * 333.69423 * 18 16 14 22 22 C 1.46964 * 118.80797 * 304.76774 * 13 12 11 23 23 C 1.46963 * 120.59202 * 269.97253 * 10 7 6 24 24 H 1.08997 * 109.47315 * 299.99436 * 1 2 3 25 25 H 1.08999 * 109.47107 * 59.99747 * 1 2 3 26 26 H 1.09010 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47581 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47790 * 300.00601 * 3 2 1 29 29 H 1.09010 * 109.46665 * 60.00267 * 3 2 1 30 30 H 1.08993 * 109.46945 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.46858 * 299.99865 * 4 2 1 32 32 H 1.08993 * 109.47378 * 179.97438 * 6 2 1 33 33 H 1.08999 * 109.46861 * 59.99835 * 6 2 1 34 34 H 1.08996 * 109.60805 * 5.00583 * 11 10 7 35 35 H 1.08999 * 109.60593 * 244.49198 * 11 10 7 36 36 H 1.09005 * 109.60250 * 169.16555 * 12 11 10 37 37 H 1.08993 * 109.61053 * 289.50607 * 12 11 10 38 38 H 0.97001 * 120.00168 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.60969 * 174.97508 * 22 13 12 40 40 H 1.08998 * 109.61638 * 295.48395 * 22 13 12 41 41 H 1.09004 * 109.60651 * 115.50709 * 23 10 7 42 42 H 1.09000 * 109.75443 * 355.08140 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 17 1.4389 0.1289 -2.7214 6 6 2.0401 -0.7214 1.2492 7 16 1.4354 0.1336 2.7303 8 8 0.0281 -0.0185 2.8544 9 8 2.0480 1.4097 2.8544 10 7 2.0542 -0.7404 3.9934 11 6 3.3664 -0.4043 4.5637 12 6 3.2002 -0.1686 6.0701 13 7 2.4469 -1.2938 6.6413 14 6 2.9587 -2.0165 7.6858 15 1 4.0280 -2.0939 7.8163 16 6 2.1031 -2.6497 8.5768 17 7 2.5414 -3.6487 9.3130 18 14 0.3295 -2.0838 8.7309 19 1 -0.5296 -2.8984 7.8343 20 1 -0.1229 -2.2502 10.1354 21 1 0.2310 -0.6532 8.3452 22 6 1.1348 -1.6298 6.0710 23 6 1.3009 -1.8655 4.5646 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8898 29 1 1.6766 1.9562 0.8901 30 1 3.1299 -0.7208 -1.2496 31 1 1.6766 -1.7489 -1.2494 32 1 3.1300 -0.7218 1.2489 33 1 1.6767 -1.7490 1.2490 34 1 3.7494 0.5005 4.0919 35 1 4.0598 -1.2286 4.3967 36 1 4.1814 -0.1084 6.5413 37 1 2.6566 0.7612 6.2371 38 1 1.9434 -4.0914 9.9354 39 1 0.7517 -2.5346 6.5428 40 1 0.4413 -0.8056 6.2380 41 1 1.8472 -2.7938 4.3977 42 1 0.3198 -1.9288 4.0939 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866696149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:48 Heat of formation + Delta-G solvation = -51.248033 kcal Electronic energy + Delta-G solvation = -24976.992368 eV Core-core repulsion = 21339.143852 eV Total energy + Delta-G solvation = -3637.848516 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.106 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.34494 -37.94060 -37.17008 -36.03003 -35.73822 -33.98902 -31.42955 -30.76572 -28.24706 -27.65444 -27.58823 -26.60365 -23.62314 -22.98707 -20.47723 -19.86835 -18.61624 -17.91737 -16.51855 -16.42212 -16.18279 -15.53503 -15.28769 -15.07196 -14.44878 -14.43890 -14.26589 -13.94174 -13.77913 -13.49597 -13.38476 -12.90704 -12.84236 -12.46437 -12.30405 -12.21707 -11.99569 -11.83032 -11.71127 -11.55602 -11.48224 -11.36857 -11.11712 -11.02444 -10.88063 -10.66958 -10.49251 -10.34664 -10.27587 -9.91455 -9.55987 -9.11034 -8.55028 -7.02303 -6.02261 -3.38299 0.19568 1.87507 2.68391 3.27890 3.46293 3.50450 3.78426 3.94464 4.06097 4.16654 4.27427 4.46993 4.67363 4.72612 4.83163 4.95948 5.00470 5.08423 5.16994 5.31098 5.37812 5.51233 5.52713 5.55476 5.64086 5.65688 5.84747 5.87659 5.94964 5.96350 5.99374 6.16431 6.28769 6.45834 6.53045 6.75721 6.87453 7.86619 8.25248 8.84886 9.63680 10.01269 11.13266 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.003317 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.444891 B = 8439.519815 C = 8586.148156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.056 4.056 3 C -0.181 4.181 4 C -0.014 4.014 5 Cl -0.180 7.180 6 C -0.632 4.632 7 S 2.605 3.395 8 O -0.952 6.952 9 O -0.952 6.952 10 N -0.989 5.989 11 C 0.100 3.900 12 C 0.137 3.863 13 N -0.602 5.602 14 C -0.262 4.262 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.286 1.286 20 H -0.301 1.301 21 H -0.269 1.269 22 C 0.116 3.884 23 C 0.101 3.899 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 5.462 -21.672 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.058 4.058 3 C -0.238 4.238 4 C -0.078 4.078 5 Cl -0.154 7.154 6 C -0.760 4.760 7 S 2.698 3.302 8 O -0.942 6.942 9 O -0.942 6.942 10 N -0.828 5.828 11 C -0.027 4.027 12 C 0.009 3.991 13 N -0.326 5.326 14 C -0.391 4.391 15 H 0.106 0.894 16 C -0.174 4.174 17 N -0.548 5.548 18 Si 0.708 3.292 19 H -0.214 1.214 20 H -0.229 1.229 21 H -0.194 1.194 22 C -0.012 4.012 23 C -0.026 4.026 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.959 6.157 -21.570 22.452 hybrid contribution -0.578 -0.501 -0.188 0.788 sum -1.536 5.656 -21.758 22.533 Atomic orbital electron populations 1.22448 0.92345 1.04187 1.04836 1.20470 0.97350 0.96193 0.91751 1.22444 1.02640 0.93846 1.04836 1.24475 1.01593 0.97703 0.84038 1.98709 1.90536 1.81705 1.44428 1.30890 1.13007 1.14311 1.17750 1.05341 0.74801 0.75099 0.74930 1.93571 1.28936 1.86539 1.85131 1.93565 1.78187 1.37285 1.85170 1.57441 1.30514 1.47995 1.46804 1.22124 0.82687 1.00360 0.97485 1.21243 0.97128 0.90330 0.90356 1.44272 1.18077 1.33231 1.36998 1.18934 0.93310 1.24732 1.02093 0.89445 1.25288 0.97879 0.97542 0.96728 1.69825 1.36319 1.21177 1.27461 0.87017 0.86113 0.79994 0.76060 1.21383 1.22921 1.19384 1.21686 0.88720 0.99839 0.90916 1.22132 0.95205 0.88056 0.97186 0.90306 0.90268 0.91104 0.91116 0.90273 0.90314 0.88452 0.88448 0.84754 0.84753 0.89602 0.91372 0.90550 0.95114 0.92642 0.89877 0.94830 0.91078 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 7.79 37.16 0.29 -1.46 16 2 C -0.06 -0.49 0.58 -154.51 -0.09 -0.58 16 3 C -0.18 -1.71 7.79 37.15 0.29 -1.42 16 4 C -0.01 -0.10 5.60 37.16 0.21 0.11 16 5 Cl -0.18 -1.53 26.53 -51.86 -1.38 -2.90 16 6 C -0.63 -5.60 5.18 37.16 0.19 -5.41 16 7 S 2.61 35.43 4.48 -107.50 -0.48 34.95 16 8 O -0.95 -15.28 14.22 -57.54 -0.82 -16.10 16 9 O -0.95 -14.78 14.21 -57.54 -0.82 -15.60 16 10 N -0.99 -15.09 3.20 -113.25 -0.36 -15.45 16 11 C 0.10 1.52 6.58 -3.59 -0.02 1.49 16 12 C 0.14 2.60 6.67 -3.59 -0.02 2.58 16 13 N -0.60 -13.86 2.74 -172.03 -0.47 -14.33 16 14 C -0.26 -7.05 10.03 -15.06 -0.15 -7.20 16 15 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 17 N -0.91 -26.97 13.97 55.49 0.78 -26.19 16 18 Si 0.88 21.95 24.38 -169.99 -4.14 17.81 16 19 H -0.29 -6.81 6.64 56.52 0.38 -6.44 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.27 -6.73 6.64 56.52 0.38 -6.35 16 22 C 0.12 2.48 4.37 -3.59 -0.02 2.46 16 23 C 0.10 1.69 6.57 -3.60 -0.02 1.67 16 24 H 0.08 0.90 5.46 -51.93 -0.28 0.61 16 25 H 0.08 0.70 7.06 -51.93 -0.37 0.33 16 26 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.69 7.06 -51.93 -0.37 0.32 16 29 H 0.08 0.88 5.46 -51.92 -0.28 0.60 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.13 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.09 1.12 6.88 -51.93 -0.36 0.76 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 39 H 0.08 1.89 4.41 -51.93 -0.23 1.66 16 40 H 0.03 0.74 7.18 -51.93 -0.37 0.37 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.26 6.89 -51.93 -0.36 0.90 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -32.69 338.48 -8.48 -41.17 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.44 Total: -1.30 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 0.56 Total: -7.15 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.06 Total: -55.97 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.64 Total: -31.70 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Atomic # 16 Polarization: 35.43 SS G_CDS: -0.48 Total: 34.95 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -1.38 Total: -2.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.69 -8.48 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866696149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.077 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds