Wall clock time and date at job start Tue Mar 31 2020 14:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.53012 * 109.47072 * 240.00469 * 2 1 3 5 5 Cl 1.80295 * 109.46737 * 59.99845 * 4 2 1 6 6 C 1.53004 * 109.47479 * 120.00643 * 2 1 3 7 7 S 1.81397 * 109.46710 * 300.00095 * 6 2 1 8 8 O 1.42094 * 110.54847 * 68.37380 * 7 6 2 9 9 O 1.42100 * 110.54098 * 291.62212 * 7 6 2 10 10 N 1.65598 * 104.44686 * 180.02562 * 7 6 2 11 11 C 1.46968 * 120.59467 * 90.00063 * 10 7 6 12 12 C 1.53376 * 108.63322 * 124.74992 * 11 10 7 13 13 N 1.46965 * 108.63589 * 49.42671 * 12 11 10 14 14 C 1.36936 * 120.59526 * 124.74948 * 13 12 11 15 15 H 1.07998 * 120.00072 * 332.32056 * 14 13 12 16 16 C 1.38813 * 119.99891 * 152.31964 * 14 13 12 17 17 N 1.31612 * 119.99978 * 159.33119 * 16 14 13 18 18 Si 1.86801 * 120.00127 * 339.33749 * 16 14 13 19 19 H 1.48504 * 109.47162 * 93.69187 * 18 16 14 20 20 H 1.48493 * 109.47071 * 213.69259 * 18 16 14 21 21 H 1.48503 * 109.47223 * 333.69423 * 18 16 14 22 22 C 1.46964 * 118.80797 * 304.76774 * 13 12 11 23 23 C 1.46963 * 120.59202 * 269.97253 * 10 7 6 24 24 H 1.08997 * 109.47315 * 299.99436 * 1 2 3 25 25 H 1.08999 * 109.47107 * 59.99747 * 1 2 3 26 26 H 1.09010 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47581 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47790 * 300.00601 * 3 2 1 29 29 H 1.09010 * 109.46665 * 60.00267 * 3 2 1 30 30 H 1.08993 * 109.46945 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.46858 * 299.99865 * 4 2 1 32 32 H 1.08993 * 109.47378 * 179.97438 * 6 2 1 33 33 H 1.08999 * 109.46861 * 59.99835 * 6 2 1 34 34 H 1.08996 * 109.60805 * 5.00583 * 11 10 7 35 35 H 1.08999 * 109.60593 * 244.49198 * 11 10 7 36 36 H 1.09005 * 109.60250 * 169.16555 * 12 11 10 37 37 H 1.08993 * 109.61053 * 289.50607 * 12 11 10 38 38 H 0.97001 * 120.00168 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.60969 * 174.97508 * 22 13 12 40 40 H 1.08998 * 109.61638 * 295.48395 * 22 13 12 41 41 H 1.09004 * 109.60651 * 115.50709 * 23 10 7 42 42 H 1.09000 * 109.75443 * 355.08140 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 17 1.4389 0.1289 -2.7214 6 6 2.0401 -0.7214 1.2492 7 16 1.4354 0.1336 2.7303 8 8 0.0281 -0.0185 2.8544 9 8 2.0480 1.4097 2.8544 10 7 2.0542 -0.7404 3.9934 11 6 3.3664 -0.4043 4.5637 12 6 3.2002 -0.1686 6.0701 13 7 2.4469 -1.2938 6.6413 14 6 2.9587 -2.0165 7.6858 15 1 4.0280 -2.0939 7.8163 16 6 2.1031 -2.6497 8.5768 17 7 2.5414 -3.6487 9.3130 18 14 0.3295 -2.0838 8.7309 19 1 -0.5296 -2.8984 7.8343 20 1 -0.1229 -2.2502 10.1354 21 1 0.2310 -0.6532 8.3452 22 6 1.1348 -1.6298 6.0710 23 6 1.3009 -1.8655 4.5646 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8898 29 1 1.6766 1.9562 0.8901 30 1 3.1299 -0.7208 -1.2496 31 1 1.6766 -1.7489 -1.2494 32 1 3.1300 -0.7218 1.2489 33 1 1.6767 -1.7490 1.2490 34 1 3.7494 0.5005 4.0919 35 1 4.0598 -1.2286 4.3967 36 1 4.1814 -0.1084 6.5413 37 1 2.6566 0.7612 6.2371 38 1 1.9434 -4.0914 9.9354 39 1 0.7517 -2.5346 6.5428 40 1 0.4413 -0.8056 6.2380 41 1 1.8472 -2.7938 4.3977 42 1 0.3198 -1.9288 4.0939 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866696149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:47 Heat of formation + Delta-G solvation = -74.495469 kcal Electronic energy + Delta-G solvation = -24978.000452 eV Core-core repulsion = 21339.143852 eV Total energy + Delta-G solvation = -3638.856600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.46654 -38.97527 -38.29046 -37.03829 -36.43137 -35.65233 -33.36004 -32.22259 -29.08545 -28.36560 -28.28117 -28.10160 -25.16339 -24.64270 -21.97193 -20.65179 -19.82979 -19.18560 -18.19056 -17.46588 -17.26013 -16.98849 -16.19217 -16.04111 -15.97873 -15.59423 -15.47881 -15.13234 -14.95594 -14.54596 -14.51128 -14.17013 -14.05091 -13.79307 -13.56715 -13.32519 -13.16338 -12.96394 -12.81597 -12.53973 -12.50669 -12.40082 -12.36829 -12.18089 -12.05559 -11.97508 -11.85854 -11.59484 -11.49060 -11.22026 -11.10821 -10.85696 -10.13080 -8.88416 -8.17920 -5.49367 -0.81272 1.26906 1.33586 1.40611 1.48463 1.61101 2.39016 2.84832 3.05294 3.08393 3.30661 3.34252 3.48069 3.50292 3.71110 4.01507 4.09642 4.18583 4.36894 4.38429 4.50499 4.51199 4.52376 4.53662 4.59930 4.63869 4.68004 4.81305 4.84278 4.85288 4.94183 5.00777 5.07398 5.25012 5.26145 5.33082 5.58368 5.85067 6.12818 6.88259 7.59268 8.01528 9.01599 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.003317 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.444891 B = 8439.519815 C = 8586.148156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 C -0.187 4.187 4 C -0.011 4.011 5 Cl -0.195 7.195 6 C -0.603 4.603 7 S 2.601 3.399 8 O -0.984 6.984 9 O -0.979 6.979 10 N -0.997 5.997 11 C 0.108 3.892 12 C 0.126 3.874 13 N -0.617 5.617 14 C -0.245 4.245 15 H 0.064 0.936 16 C -0.027 4.027 17 N -0.951 5.951 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.310 1.310 21 H -0.274 1.274 22 C 0.105 3.895 23 C 0.110 3.890 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.022 0.978 41 H 0.087 0.913 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 5.126 -24.973 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.059 4.059 3 C -0.244 4.244 4 C -0.075 4.075 5 Cl -0.169 7.169 6 C -0.735 4.735 7 S 2.700 3.300 8 O -0.974 6.974 9 O -0.969 6.969 10 N -0.835 5.835 11 C -0.019 4.019 12 C -0.001 4.001 13 N -0.342 5.342 14 C -0.374 4.374 15 H 0.081 0.919 16 C -0.223 4.223 17 N -0.597 5.597 18 Si 0.762 3.238 19 H -0.195 1.195 20 H -0.239 1.239 21 H -0.199 1.199 22 C -0.022 4.022 23 C -0.017 4.017 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.589 5.873 -24.850 25.542 hybrid contribution -0.649 -0.282 0.697 0.993 sum -1.238 5.591 -24.153 24.823 Atomic orbital electron populations 1.22512 0.93303 1.04736 1.03963 1.20496 0.96678 0.96033 0.92668 1.22506 1.03620 0.94317 1.03971 1.24587 1.02876 0.97934 0.82091 1.98718 1.90785 1.82135 1.45244 1.30601 1.14995 1.14636 1.13280 1.05174 0.74008 0.74747 0.76052 1.93538 1.30978 1.86824 1.86106 1.93538 1.78234 1.39051 1.86083 1.57427 1.30157 1.47420 1.48467 1.22003 0.83213 1.02248 0.94393 1.21478 0.96574 0.88645 0.93373 1.44388 1.18910 1.34299 1.36566 1.18913 0.92347 1.23581 1.02586 0.91874 1.25790 1.01194 0.98071 0.97226 1.69927 1.37631 1.22965 1.29186 0.86137 0.82805 0.79323 0.75568 1.19478 1.23873 1.19928 1.21718 0.87564 0.98495 0.94430 1.21898 0.96896 0.89181 0.93726 0.92504 0.89914 0.89890 0.89642 0.89955 0.92468 0.86270 0.86463 0.81409 0.81755 0.87237 0.89551 0.90270 0.95976 0.92868 0.91597 0.96053 0.89458 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 7.79 71.98 0.56 -2.58 16 2 C -0.06 -0.78 0.58 -52.18 -0.03 -0.81 16 3 C -0.19 -3.01 7.79 71.98 0.56 -2.45 16 4 C -0.01 -0.10 5.60 71.99 0.40 0.30 16 5 Cl -0.20 -2.71 26.53 -2.72 -0.07 -2.78 16 6 C -0.60 -7.66 5.18 71.98 0.37 -7.29 16 7 S 2.60 64.08 4.48 -56.49 -0.25 63.83 16 8 O -0.98 -30.14 14.22 -127.65 -1.82 -31.96 16 9 O -0.98 -28.69 14.21 -127.65 -1.81 -30.50 16 10 N -1.00 -27.75 3.20 -512.22 -1.64 -29.39 16 11 C 0.11 2.99 6.58 86.42 0.57 3.55 16 12 C 0.13 4.69 6.67 86.42 0.58 5.26 16 13 N -0.62 -28.28 2.74 -698.19 -1.91 -30.19 16 14 C -0.24 -13.37 10.03 84.03 0.84 -12.53 16 15 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 16 C -0.03 -1.57 5.23 84.86 0.44 -1.13 16 17 N -0.95 -58.19 13.97 21.65 0.30 -57.89 16 18 Si 0.93 46.37 24.38 68.60 1.67 48.04 16 19 H -0.27 -12.40 6.64 99.48 0.66 -11.74 16 20 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 21 H -0.27 -13.64 6.64 99.48 0.66 -12.98 16 22 C 0.10 4.40 4.37 86.42 0.38 4.77 16 23 C 0.11 3.41 6.57 86.42 0.57 3.98 16 24 H 0.06 1.22 5.46 -2.39 -0.01 1.21 16 25 H 0.08 1.30 7.06 -2.39 -0.02 1.28 16 26 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.25 7.06 -2.39 -0.02 1.24 16 29 H 0.06 1.19 5.46 -2.38 -0.01 1.18 16 30 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 2.53 6.88 -2.39 -0.02 2.51 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.83 7.93 -2.38 -0.02 2.81 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.07 2.97 4.41 -2.39 -0.01 2.96 16 40 H 0.02 0.94 7.18 -2.39 -0.02 0.93 16 41 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.10 2.82 6.89 -2.39 -0.02 2.80 16 Total: -1.00 -73.66 338.48 0.63 -73.03 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.92 Total: 6.73 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.24 Total: -8.92 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -3.25 Total: -117.47 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -3.63 Total: -62.46 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.67 Total: 48.04 kcal Atomic # 16 Polarization: 64.08 SS G_CDS: -0.25 Total: 63.83 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.07 Total: -2.78 kcal Total: -73.66 0.63 -73.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866696149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.466 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds