Wall clock time and date at job start Tue Mar 31 2020 14:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46849 * 2 1 4 4 H 1.08996 * 109.46930 * 55.00049 * 3 2 1 5 5 C 1.50705 * 109.46758 * 174.99800 * 3 2 1 6 6 H 1.08002 * 119.99660 * 119.99647 * 5 3 2 7 7 C 1.37877 * 120.00226 * 299.99854 * 5 3 2 8 8 N 1.31512 * 119.99634 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00062 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47153 * 59.99640 * 9 7 5 11 11 H 1.48493 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47005 * 299.99952 * 9 7 5 13 13 O 1.42900 * 109.47293 * 294.99624 * 3 2 1 14 14 C 1.34978 * 116.99974 * 90.00201 * 13 3 2 15 15 O 1.21708 * 119.99678 * 0.02562 * 14 13 3 16 16 C 1.41558 * 120.00020 * 180.02562 * 14 13 3 17 17 C 1.38649 * 126.79685 * 179.97438 * 16 14 13 18 18 C 1.50701 * 125.90069 * 0.03291 * 17 16 14 19 19 F 1.39900 * 109.47324 * 210.02592 * 18 17 16 20 20 F 1.39899 * 109.47297 * 330.03380 * 18 17 16 21 21 N 1.32273 * 108.20169 * 180.02562 * 17 16 14 22 22 C 1.33235 * 109.83811 * 359.97438 * 21 17 16 23 23 C 1.40637 * 131.79585 * 180.02562 * 22 21 17 24 24 C 1.36302 * 119.38385 * 179.97438 * 23 22 21 25 25 C 1.40165 * 119.60445 * 0.02562 * 24 23 22 26 26 C 1.35271 * 120.11956 * 359.97438 * 25 24 23 27 27 N 1.35939 * 120.63995 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47381 * 300.00247 * 1 2 3 30 30 H 1.09008 * 109.46751 * 60.00137 * 1 2 3 31 31 H 1.09000 * 109.47051 * 240.00186 * 2 1 3 32 32 H 1.08995 * 109.47056 * 120.00029 * 2 1 3 33 33 H 0.97004 * 119.99640 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46409 * 90.03043 * 18 17 16 35 35 H 1.07991 * 120.30909 * 0.02562 * 23 22 21 36 36 H 1.08000 * 120.19662 * 180.29514 * 24 23 22 37 37 H 1.08006 * 119.93843 * 179.97438 * 25 24 23 38 38 H 1.07994 * 119.68263 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4994 2.2815 1.3821 11 1 6.3977 0.2168 2.6504 12 1 6.5975 0.1473 0.2350 13 8 1.6620 2.0814 -1.2211 14 6 0.4722 2.7187 -1.2365 15 8 -0.2244 2.7311 -0.2385 16 6 0.0347 3.3726 -2.4133 17 6 -1.1541 4.0650 -2.5856 18 6 -2.2232 4.2587 -1.5413 19 9 -3.4714 4.3605 -2.1651 20 9 -2.2259 3.1656 -0.6683 21 7 -1.1876 4.5264 -3.8248 22 6 -0.0781 4.1695 -4.4703 23 6 0.3594 4.4089 -5.7853 24 6 1.5640 3.9157 -6.1896 25 6 2.3471 3.1783 -5.2910 26 6 1.9087 2.9588 -4.0303 27 7 0.7090 3.4481 -3.6189 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0611 2.9499 34 1 -2.0219 5.1713 -0.9803 35 1 -0.2530 4.9789 -6.4681 36 1 1.9149 4.0958 -7.1950 37 1 3.3024 2.7846 -5.6058 38 1 2.5180 2.3900 -3.3436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870309338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:13 Heat of formation + Delta-G solvation = -95.063288 kcal Electronic energy + Delta-G solvation = -28232.769611 eV Core-core repulsion = 23905.780492 eV Total energy + Delta-G solvation = -4326.989119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.69797 -46.67948 -43.10009 -39.65914 -37.75675 -35.91208 -34.15323 -33.43163 -31.44333 -31.17794 -29.58812 -27.53353 -26.83539 -24.69117 -23.18748 -23.17479 -21.91603 -20.59070 -19.81778 -18.43646 -17.47408 -17.38678 -17.03802 -16.69965 -16.39746 -16.25001 -16.06194 -15.49234 -15.19261 -15.05130 -14.65221 -14.52959 -13.52350 -13.19230 -13.03242 -12.89777 -12.76372 -12.65064 -12.38315 -12.05057 -11.98117 -11.57054 -11.40233 -11.30093 -11.28764 -11.19457 -11.01025 -10.72378 -10.51041 -10.35198 -9.86788 -9.71850 -9.43463 -9.15429 -8.86516 -8.51457 -8.10770 -6.24658 -4.33220 0.43141 0.61273 2.05741 2.19464 3.19424 3.19725 3.23750 3.25518 3.39790 3.46333 3.55636 3.94455 4.24142 4.28687 4.38926 4.63102 4.69763 4.82889 5.01376 5.03308 5.07169 5.42685 5.49703 5.59185 5.81302 5.93469 6.02083 6.20813 6.23139 6.29977 6.43666 6.71817 6.83169 6.93691 7.13284 7.17750 7.39034 7.53261 7.67686 7.85264 8.07831 8.50390 8.77925 9.32342 10.81803 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.004840 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.228107 B = 5784.008216 C = 7455.391294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.274 1.274 13 O -0.355 6.355 14 C 0.522 3.478 15 O -0.479 6.479 16 C -0.078 4.078 17 C 0.070 3.930 18 C 0.354 3.646 19 F -0.193 7.193 20 F -0.160 7.160 21 N -0.471 5.471 22 C 0.246 3.754 23 C -0.093 4.093 24 C -0.081 4.081 25 C -0.145 4.145 26 C 0.083 3.917 27 N -0.326 5.326 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.268 0.732 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 6.833 -14.629 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.563 4.563 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.272 6.272 14 C 0.366 3.634 15 O -0.367 6.367 16 C -0.191 4.191 17 C -0.072 4.072 18 C 0.299 3.701 19 F -0.174 7.174 20 F -0.141 7.141 21 N -0.190 5.190 22 C 0.005 3.995 23 C -0.113 4.113 24 C -0.105 4.105 25 C -0.165 4.165 26 C -0.041 4.041 27 N 0.003 4.997 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.627 7.088 -14.352 16.663 hybrid contribution 1.551 -0.691 0.496 1.769 sum -3.075 6.397 -13.856 15.569 Atomic orbital electron populations 1.21859 0.98137 0.99061 1.00943 1.22046 0.92769 0.99335 1.03228 1.20318 0.95009 0.88870 0.79015 0.93348 1.20942 0.89414 1.39510 1.06394 0.91622 1.24869 0.99138 0.94678 0.95054 1.69879 1.35489 1.37345 1.09384 0.86365 0.83922 0.78456 0.77575 1.20026 1.20953 1.19981 1.86094 1.33622 1.62963 1.44494 1.17982 0.81853 0.77653 0.85931 1.91001 1.54192 1.58207 1.33298 1.19300 0.97187 1.15728 0.86899 1.21879 0.94018 0.97283 0.93975 1.19377 0.77171 0.90331 0.83193 1.93011 1.43712 1.96691 1.83981 1.93219 1.95929 1.56385 1.68519 1.70325 1.19242 1.25321 1.04144 1.21011 0.88471 0.96587 0.93402 1.20312 0.97464 1.02413 0.91103 1.21211 0.93170 0.95581 1.00559 1.21024 1.02164 1.01521 0.91794 1.22320 0.85429 0.98251 0.98133 1.42698 1.14043 1.32504 1.10411 0.94868 0.92518 0.95054 0.94249 0.87337 0.92237 0.85259 0.82583 0.83390 0.82291 0.79593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.55 37.16 0.32 -2.85 16 2 C -0.14 -3.30 5.48 -26.73 -0.15 -3.44 16 3 C 0.22 5.62 2.22 -27.88 -0.06 5.56 16 4 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 5 C -0.52 -13.93 8.89 -34.44 -0.31 -14.23 16 6 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -24.26 11.29 55.43 0.63 -23.63 16 9 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 O -0.35 -7.99 7.78 -41.26 -0.32 -8.31 16 14 C 0.52 11.07 6.10 32.00 0.20 11.27 16 15 O -0.48 -10.90 10.15 -19.43 -0.20 -11.09 16 16 C -0.08 -1.43 6.81 -83.51 -0.57 -2.00 16 17 C 0.07 1.21 6.79 -82.25 -0.56 0.65 16 18 C 0.35 5.52 5.61 36.01 0.20 5.72 16 19 F -0.19 -3.01 17.28 2.25 0.04 -2.97 16 20 F -0.16 -2.97 13.48 2.25 0.03 -2.94 16 21 N -0.47 -7.66 11.18 -8.50 -0.10 -7.76 16 22 C 0.25 3.54 7.77 -156.06 -1.21 2.33 16 23 C -0.09 -0.92 10.10 -39.37 -0.40 -1.32 16 24 C -0.08 -0.62 10.07 -39.56 -0.40 -1.02 16 25 C -0.15 -1.30 10.00 -39.92 -0.40 -1.70 16 26 C 0.08 1.08 10.52 -16.79 -0.18 0.90 16 27 N -0.33 -5.12 2.96 -60.18 -0.18 -5.30 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 30 H 0.03 0.68 6.05 -51.92 -0.31 0.37 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 2.86 5.95 -51.93 -0.31 2.56 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.19 2.62 6.61 -52.49 -0.35 2.27 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -31.53 327.35 -7.61 -39.14 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.82 Total: 1.20 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.60 Total: 1.51 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.35 Total: -36.69 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.52 Total: -19.40 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.07 Total: -5.90 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.53 -7.61 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870309338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.922 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds