Wall clock time and date at job start Tue Mar 31 2020 14:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46849 * 2 1 4 4 H 1.08996 * 109.46930 * 55.00049 * 3 2 1 5 5 C 1.50705 * 109.46758 * 174.99800 * 3 2 1 6 6 H 1.08002 * 119.99660 * 119.99647 * 5 3 2 7 7 C 1.37877 * 120.00226 * 299.99854 * 5 3 2 8 8 N 1.31512 * 119.99634 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00062 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47153 * 59.99640 * 9 7 5 11 11 H 1.48493 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47005 * 299.99952 * 9 7 5 13 13 O 1.42900 * 109.47293 * 294.99624 * 3 2 1 14 14 C 1.34978 * 116.99974 * 90.00201 * 13 3 2 15 15 O 1.21708 * 119.99678 * 0.02562 * 14 13 3 16 16 C 1.41558 * 120.00020 * 180.02562 * 14 13 3 17 17 C 1.38649 * 126.79685 * 179.97438 * 16 14 13 18 18 C 1.50701 * 125.90069 * 0.03291 * 17 16 14 19 19 F 1.39900 * 109.47324 * 210.02592 * 18 17 16 20 20 F 1.39899 * 109.47297 * 330.03380 * 18 17 16 21 21 N 1.32273 * 108.20169 * 180.02562 * 17 16 14 22 22 C 1.33235 * 109.83811 * 359.97438 * 21 17 16 23 23 C 1.40637 * 131.79585 * 180.02562 * 22 21 17 24 24 C 1.36302 * 119.38385 * 179.97438 * 23 22 21 25 25 C 1.40165 * 119.60445 * 0.02562 * 24 23 22 26 26 C 1.35271 * 120.11956 * 359.97438 * 25 24 23 27 27 N 1.35939 * 120.63995 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47381 * 300.00247 * 1 2 3 30 30 H 1.09008 * 109.46751 * 60.00137 * 1 2 3 31 31 H 1.09000 * 109.47051 * 240.00186 * 2 1 3 32 32 H 1.08995 * 109.47056 * 120.00029 * 2 1 3 33 33 H 0.97004 * 119.99640 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46409 * 90.03043 * 18 17 16 35 35 H 1.07991 * 120.30909 * 0.02562 * 23 22 21 36 36 H 1.08000 * 120.19662 * 180.29514 * 24 23 22 37 37 H 1.08006 * 119.93843 * 179.97438 * 25 24 23 38 38 H 1.07994 * 119.68263 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4994 2.2815 1.3821 11 1 6.3977 0.2168 2.6504 12 1 6.5975 0.1473 0.2350 13 8 1.6620 2.0814 -1.2211 14 6 0.4722 2.7187 -1.2365 15 8 -0.2244 2.7311 -0.2385 16 6 0.0347 3.3726 -2.4133 17 6 -1.1541 4.0650 -2.5856 18 6 -2.2232 4.2587 -1.5413 19 9 -3.4714 4.3605 -2.1651 20 9 -2.2259 3.1656 -0.6683 21 7 -1.1876 4.5264 -3.8248 22 6 -0.0781 4.1695 -4.4703 23 6 0.3594 4.4089 -5.7853 24 6 1.5640 3.9157 -6.1896 25 6 2.3471 3.1783 -5.2910 26 6 1.9087 2.9588 -4.0303 27 7 0.7090 3.4481 -3.6189 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0611 2.9499 34 1 -2.0219 5.1713 -0.9803 35 1 -0.2530 4.9789 -6.4681 36 1 1.9149 4.0958 -7.1950 37 1 3.3024 2.7846 -5.6058 38 1 2.5180 2.3900 -3.3436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870309338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:13 Heat of formation + Delta-G solvation = -112.338434 kcal Electronic energy + Delta-G solvation = -28233.518718 eV Core-core repulsion = 23905.780492 eV Total energy + Delta-G solvation = -4327.738226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98373 -47.98769 -44.20769 -41.34071 -38.79155 -37.62145 -35.62242 -34.91850 -33.35947 -32.28786 -30.70459 -29.37127 -28.12739 -26.02595 -24.93848 -24.17708 -23.27205 -22.03898 -21.51447 -19.83270 -18.81178 -18.67166 -18.45071 -18.27669 -17.59901 -17.55940 -17.40741 -16.85734 -16.67137 -16.45819 -15.99758 -15.60897 -14.97273 -14.81792 -14.78575 -14.38524 -14.11822 -13.92829 -13.48665 -13.36473 -13.35587 -13.19803 -13.15806 -12.89676 -12.78652 -12.57674 -12.45533 -12.15834 -12.14578 -11.78602 -11.73799 -11.43921 -11.36310 -10.82318 -10.52726 -10.20936 -9.18687 -8.26555 -6.44206 -0.67192 -0.30256 0.92318 1.11107 1.41818 1.45128 1.53248 1.87421 1.96288 2.26988 2.37197 2.41634 2.81856 3.03324 3.10657 3.44652 3.60650 3.84726 3.85201 3.92020 4.07273 4.19797 4.35395 4.36652 4.45814 4.55598 4.64213 4.81738 4.90574 5.01773 5.05460 5.10867 5.19059 5.30814 5.41044 5.49309 5.64557 5.71664 5.93721 6.07499 6.23269 6.58966 6.90728 7.27023 8.80065 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.004840 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.228107 B = 5784.008216 C = 7455.391294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.006 0.994 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.261 1.261 13 O -0.355 6.355 14 C 0.521 3.479 15 O -0.507 6.507 16 C -0.129 4.129 17 C 0.075 3.925 18 C 0.350 3.650 19 F -0.193 7.193 20 F -0.181 7.181 21 N -0.491 5.491 22 C 0.240 3.760 23 C -0.098 4.098 24 C -0.050 4.050 25 C -0.109 4.109 26 C 0.037 3.963 27 N -0.328 5.328 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.270 0.730 34 H 0.164 0.836 35 H 0.188 0.812 36 H 0.205 0.795 37 H 0.200 0.800 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 7.555 -18.423 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.186 1.186 13 O -0.272 6.272 14 C 0.368 3.632 15 O -0.397 6.397 16 C -0.242 4.242 17 C -0.069 4.069 18 C 0.295 3.705 19 F -0.174 7.174 20 F -0.162 7.162 21 N -0.211 5.211 22 C 0.000 4.000 23 C -0.118 4.118 24 C -0.074 4.074 25 C -0.128 4.128 26 C -0.088 4.088 27 N 0.003 4.997 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.180 0.820 35 H 0.205 0.795 36 H 0.222 0.778 37 H 0.217 0.783 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.835 7.812 -18.180 19.990 hybrid contribution 1.041 -0.843 1.399 1.937 sum -1.795 6.969 -16.781 18.259 Atomic orbital electron populations 1.21691 0.96665 1.00261 0.99901 1.21888 0.93989 0.98465 1.02255 1.19986 0.94725 0.89077 0.78897 0.97579 1.21250 0.90022 1.40139 1.07041 0.91288 1.25792 1.04101 0.93866 0.94371 1.70018 1.37532 1.37742 1.09827 0.85277 0.77779 0.78703 0.77927 1.19466 1.20567 1.18585 1.86085 1.34847 1.63459 1.42800 1.18365 0.80882 0.77135 0.86840 1.90970 1.54617 1.59492 1.34617 1.18865 0.98926 1.18927 0.87476 1.22033 0.93715 0.96630 0.94568 1.19763 0.76892 0.90757 0.83106 1.92998 1.43733 1.96659 1.84038 1.93169 1.96021 1.57723 1.69255 1.70324 1.20562 1.26388 1.03777 1.21829 0.87784 0.95684 0.94656 1.20921 0.98827 1.02730 0.89281 1.21888 0.91165 0.92104 1.02236 1.21669 1.02988 0.98520 0.89619 1.22518 0.85406 1.00802 1.00026 1.42718 1.14731 1.32651 1.09621 0.92344 0.94309 0.95324 0.93740 0.89452 0.92085 0.81971 0.79482 0.77817 0.78337 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.55 71.98 0.62 -5.31 16 2 C -0.13 -6.50 5.48 30.60 0.17 -6.33 16 3 C 0.23 12.23 2.22 29.85 0.07 12.30 16 4 H 0.01 0.39 7.11 -2.39 -0.02 0.38 16 5 C -0.55 -30.00 8.89 25.60 0.23 -29.78 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -51.73 11.29 21.45 0.24 -51.49 16 9 Si 0.98 41.56 29.54 68.60 2.03 43.59 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 O -0.36 -16.99 7.78 -58.95 -0.46 -17.45 16 14 C 0.52 23.65 6.10 68.64 0.42 24.07 16 15 O -0.51 -24.88 10.15 19.15 0.19 -24.69 16 16 C -0.13 -4.97 6.81 39.03 0.27 -4.71 16 17 C 0.07 2.65 6.79 42.59 0.29 2.94 16 18 C 0.35 11.31 5.61 71.24 0.40 11.71 16 19 F -0.19 -6.13 17.28 44.97 0.78 -5.35 16 20 F -0.18 -7.14 13.48 44.97 0.61 -6.53 16 21 N -0.49 -15.84 11.18 -180.79 -2.02 -17.86 16 22 C 0.24 6.56 7.77 134.00 1.04 7.60 16 23 C -0.10 -1.51 10.10 22.40 0.23 -1.29 16 24 C -0.05 -0.46 10.07 22.29 0.22 -0.23 16 25 C -0.11 -1.46 10.00 22.05 0.22 -1.24 16 26 C 0.04 0.92 10.52 83.37 0.88 1.80 16 27 N -0.33 -10.31 2.96 -344.30 -1.02 -11.32 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.90 7.75 -2.39 -0.02 1.88 16 30 H 0.03 1.31 6.05 -2.38 -0.01 1.29 16 31 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 4.83 5.95 -2.39 -0.01 4.81 16 33 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 34 H 0.16 4.06 8.14 -2.39 -0.02 4.04 16 35 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.20 -0.21 8.06 -2.91 -0.02 -0.23 16 37 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.17 4.80 6.61 -2.91 -0.02 4.78 16 Total: -1.00 -74.75 327.35 6.95 -67.80 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.12 Total: 10.30 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 5.49 Total: 13.01 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -2.80 Total: -80.68 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.26 Total: -42.13 kcal Atomic # 9 Polarization: -13.27 SS G_CDS: 1.38 Total: -11.88 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -74.75 6.95 -67.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870309338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.539 kcal (2) G-P(sol) polarization free energy of solvation -74.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds