Wall clock time and date at job start Tue Mar 31 2020 13:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99768 * 2 1 4 4 H 1.48506 * 109.47122 * 240.00111 * 3 2 1 5 5 H 1.48505 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47434 * 120.00083 * 3 2 1 7 7 C 1.37877 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99884 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99995 * 169.99837 * 10 9 7 12 12 C 1.53239 * 109.33808 * 187.25038 * 11 10 9 13 13 N 1.47078 * 108.52539 * 306.17223 * 12 11 10 14 14 C 1.34775 * 120.88114 * 231.19069 * 13 12 11 15 15 O 1.21580 * 119.99899 * 187.03093 * 14 13 12 16 16 N 1.34777 * 119.99927 * 7.03221 * 14 13 12 17 17 C 1.39543 * 120.00088 * 188.79244 * 16 14 13 18 18 C 1.39463 * 120.84571 * 334.63612 * 17 16 14 19 19 C 1.37890 * 119.10226 * 179.70743 * 18 17 16 20 20 N 1.32012 * 120.85544 * 0.58572 * 19 18 17 21 21 C 1.32049 * 121.87491 * 359.70971 * 20 19 18 22 22 Cl 1.73601 * 119.60145 * 180.02562 * 21 20 19 23 23 C 1.38137 * 120.80482 * 359.97438 * 21 20 19 24 24 C 1.47072 * 118.23629 * 51.45729 * 13 12 11 25 25 C 1.46901 * 111.00210 * 294.29977 * 10 9 7 26 26 H 0.97003 * 120.00326 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47359 * 59.99737 * 9 7 2 28 28 H 1.09006 * 109.46823 * 299.99849 * 9 7 2 29 29 H 1.08993 * 109.48929 * 67.29353 * 11 10 9 30 30 H 1.08996 * 109.49068 * 307.20861 * 11 10 9 31 31 H 1.09005 * 109.62957 * 186.45631 * 12 11 10 32 32 H 1.09006 * 109.62927 * 65.88545 * 12 11 10 33 33 H 0.97001 * 120.00669 * 8.78137 * 16 14 13 34 34 H 1.07995 * 120.45112 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.57077 * 180.27268 * 19 18 17 36 36 H 1.08000 * 120.47058 * 180.02562 * 23 21 20 37 37 H 1.08993 * 109.63208 * 68.25625 * 24 13 12 38 38 H 1.09001 * 109.62728 * 188.83973 * 24 13 12 39 39 H 1.09005 * 109.49031 * 292.71336 * 25 10 9 40 40 H 1.09000 * 109.48870 * 52.78455 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5211 -4.8934 0.2400 12 6 2.5636 -6.0029 0.4140 13 7 3.4623 -5.9865 -0.7501 14 6 3.7131 -7.1129 -1.4464 15 8 4.5541 -7.1103 -2.3243 16 7 3.0315 -8.2421 -1.1694 17 6 3.4130 -9.4491 -1.7567 18 6 4.0968 -9.4684 -2.9720 19 6 4.4618 -10.6813 -3.5170 20 7 4.1619 -11.8143 -2.9094 21 6 3.5105 -11.8385 -1.7610 22 17 3.1474 -13.3625 -1.0131 23 6 3.1155 -10.6659 -1.1469 24 6 4.0847 -4.7094 -1.1307 25 6 2.9777 -3.6496 -1.2475 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5566 0.8904 29 1 0.8802 -5.1266 -0.6102 30 1 0.9153 -4.8186 1.1430 31 1 2.0630 -6.9692 0.4766 32 1 3.1386 -5.8258 1.3230 33 1 2.2760 -8.2160 -0.5616 34 1 4.3418 -8.5457 -3.4768 35 1 4.9955 -10.7049 -4.4556 36 1 2.5833 -10.6920 -0.2075 37 1 4.8030 -4.4104 -0.3675 38 1 4.5901 -4.8200 -2.0901 39 1 2.3164 -3.9001 -2.0771 40 1 3.4282 -2.6727 -1.4233 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879072339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:56 Heat of formation + Delta-G solvation = 29.572890 kcal Electronic energy + Delta-G solvation = -24493.948659 eV Core-core repulsion = 20756.453602 eV Total energy + Delta-G solvation = -3737.495058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35296 -39.94618 -37.98957 -36.91956 -35.61179 -34.70829 -32.55289 -31.52228 -31.20217 -30.61523 -28.28778 -25.73443 -24.19597 -23.97321 -23.15758 -22.24619 -21.02336 -19.76492 -18.81452 -17.94163 -16.57141 -16.49185 -16.37472 -16.06088 -15.48119 -15.06199 -14.78442 -14.73046 -14.58358 -14.30072 -14.04889 -13.97466 -13.72157 -13.30770 -12.49792 -12.38996 -12.13075 -12.05166 -11.62542 -11.42097 -11.39100 -11.30594 -10.95979 -10.89171 -10.73677 -10.65103 -10.43769 -9.97661 -9.72168 -9.40072 -9.33026 -9.07168 -8.61739 -8.52499 -7.47784 -6.13661 -4.16107 0.67026 0.81977 1.46319 2.24199 2.80730 3.26903 3.31695 3.33927 3.38367 3.47067 4.18967 4.31219 4.52786 4.58809 4.63683 4.82590 4.97674 5.08573 5.13841 5.21236 5.24692 5.37970 5.43557 5.62010 5.68396 5.74319 5.83625 5.90943 6.01974 6.20855 6.37465 6.39566 6.44434 6.65716 7.09344 7.16113 7.47033 7.51727 7.64436 7.88785 8.00528 8.16507 8.36397 8.90605 9.48929 10.97020 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.002202 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.629499 B =12710.826885 C =13220.228784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.114 3.886 13 N -0.614 5.614 14 C 0.708 3.292 15 O -0.571 6.571 16 N -0.680 5.680 17 C 0.231 3.769 18 C -0.188 4.188 19 C 0.136 3.864 20 N -0.499 5.499 21 C 0.196 3.804 22 Cl -0.033 7.033 23 C -0.197 4.197 24 C 0.131 3.869 25 C 0.049 3.951 26 H 0.263 0.737 27 H -0.008 1.008 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 -20.936 -1.628 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.091 4.091 12 C -0.009 4.009 13 N -0.350 5.350 14 C 0.411 3.589 15 O -0.448 6.448 16 N -0.328 5.328 17 C 0.124 3.876 18 C -0.210 4.210 19 C -0.020 4.020 20 N -0.213 5.213 21 C 0.031 3.969 22 Cl -0.005 7.005 23 C -0.222 4.222 24 C 0.009 3.991 25 C -0.080 4.080 26 H 0.073 0.927 27 H 0.009 0.991 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.194 0.806 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.877 -21.502 -2.127 22.392 hybrid contribution -1.052 1.447 0.297 1.813 sum 4.825 -20.055 -1.830 20.708 Atomic orbital electron populations 1.69938 1.06109 1.27088 1.50525 1.24992 0.94880 0.99416 0.95231 0.86539 0.79435 0.82595 0.78722 1.20200 1.21344 1.20095 1.21081 0.93463 0.89813 1.50735 0.91794 1.19727 0.89935 0.87114 0.96235 1.62097 1.27923 1.02425 1.33552 1.22402 0.94600 0.90907 1.01157 1.21898 0.91993 0.98367 0.88656 1.47523 1.49015 1.07860 1.30626 1.15779 0.81206 0.79953 0.82000 1.90806 1.36601 1.83262 1.34180 1.42748 1.34436 1.05787 1.49791 1.17678 0.94193 0.84420 0.91278 1.22943 1.01009 1.02161 0.94929 1.22637 0.95006 0.85783 0.98589 1.67028 1.13783 1.31774 1.08672 1.21189 0.96722 0.86931 0.92078 1.98406 1.92512 1.30188 1.79394 1.21375 1.07978 0.90017 1.02791 1.21973 0.95578 0.79889 1.01648 1.22482 0.95124 0.99270 0.91116 0.92744 0.99055 0.95002 0.95395 0.89764 0.91288 0.89881 0.74860 0.80587 0.81422 0.83609 0.90529 0.89051 0.95571 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.47 8.41 -34.44 -0.29 -13.76 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 9 C 0.19 4.67 4.72 -4.98 -0.02 4.65 16 10 N -0.53 -10.15 4.62 -235.46 -1.09 -11.24 16 11 C 0.04 0.58 5.62 -3.70 -0.02 0.55 16 12 C 0.11 1.28 6.60 -3.60 -0.02 1.26 16 13 N -0.61 -8.02 3.00 -177.92 -0.53 -8.55 16 14 C 0.71 9.31 8.21 -86.92 -0.71 8.60 16 15 O -0.57 -8.90 12.74 5.30 0.07 -8.83 16 16 N -0.68 -6.89 5.23 -14.07 -0.07 -6.97 16 17 C 0.23 2.44 6.51 -83.49 -0.54 1.89 16 18 C -0.19 -2.09 8.92 -39.25 -0.35 -2.44 16 19 C 0.14 1.37 11.17 -17.60 -0.20 1.17 16 20 N -0.50 -5.73 10.34 -10.44 -0.11 -5.84 16 21 C 0.20 2.07 7.27 -17.50 -0.13 1.94 16 22 Cl -0.03 -0.31 29.10 -51.86 -1.51 -1.82 16 23 C -0.20 -1.83 9.80 -39.22 -0.38 -2.21 16 24 C 0.13 1.90 6.60 -3.37 -0.02 1.87 16 25 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H -0.01 -0.22 8.13 -51.93 -0.42 -0.64 16 28 H 0.03 0.82 7.97 -51.93 -0.41 0.40 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 31 H 0.07 0.53 5.67 -51.93 -0.29 0.24 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.41 3.09 6.40 -40.82 -0.26 2.83 16 34 H 0.18 2.18 5.48 -52.49 -0.29 1.90 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.30 7.11 -51.93 -0.37 0.93 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.89 6.67 -51.93 -0.35 1.55 16 LS Contribution 343.48 15.07 5.18 5.18 Total: -1.00 -30.72 343.48 -10.02 -40.74 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.86 Total: 0.65 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.81 Total: 5.80 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -1.07 Total: -57.42 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.72 -10.02 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879072339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.317 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds