Wall clock time and date at job start Tue Mar 31 2020 13:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99768 * 2 1 4 4 H 1.48506 * 109.47122 * 240.00111 * 3 2 1 5 5 H 1.48505 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47434 * 120.00083 * 3 2 1 7 7 C 1.37877 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99884 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99995 * 169.99837 * 10 9 7 12 12 C 1.53239 * 109.33808 * 187.25038 * 11 10 9 13 13 N 1.47078 * 108.52539 * 306.17223 * 12 11 10 14 14 C 1.34775 * 120.88114 * 231.19069 * 13 12 11 15 15 O 1.21580 * 119.99899 * 187.03093 * 14 13 12 16 16 N 1.34777 * 119.99927 * 7.03221 * 14 13 12 17 17 C 1.39543 * 120.00088 * 188.79244 * 16 14 13 18 18 C 1.39463 * 120.84571 * 334.63612 * 17 16 14 19 19 C 1.37890 * 119.10226 * 179.70743 * 18 17 16 20 20 N 1.32012 * 120.85544 * 0.58572 * 19 18 17 21 21 C 1.32049 * 121.87491 * 359.70971 * 20 19 18 22 22 Cl 1.73601 * 119.60145 * 180.02562 * 21 20 19 23 23 C 1.38137 * 120.80482 * 359.97438 * 21 20 19 24 24 C 1.47072 * 118.23629 * 51.45729 * 13 12 11 25 25 C 1.46901 * 111.00210 * 294.29977 * 10 9 7 26 26 H 0.97003 * 120.00326 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47359 * 59.99737 * 9 7 2 28 28 H 1.09006 * 109.46823 * 299.99849 * 9 7 2 29 29 H 1.08993 * 109.48929 * 67.29353 * 11 10 9 30 30 H 1.08996 * 109.49068 * 307.20861 * 11 10 9 31 31 H 1.09005 * 109.62957 * 186.45631 * 12 11 10 32 32 H 1.09006 * 109.62927 * 65.88545 * 12 11 10 33 33 H 0.97001 * 120.00669 * 8.78137 * 16 14 13 34 34 H 1.07995 * 120.45112 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.57077 * 180.27268 * 19 18 17 36 36 H 1.08000 * 120.47058 * 180.02562 * 23 21 20 37 37 H 1.08993 * 109.63208 * 68.25625 * 24 13 12 38 38 H 1.09001 * 109.62728 * 188.83973 * 24 13 12 39 39 H 1.09005 * 109.49031 * 292.71336 * 25 10 9 40 40 H 1.09000 * 109.48870 * 52.78455 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5211 -4.8934 0.2400 12 6 2.5636 -6.0029 0.4140 13 7 3.4623 -5.9865 -0.7501 14 6 3.7131 -7.1129 -1.4464 15 8 4.5541 -7.1103 -2.3243 16 7 3.0315 -8.2421 -1.1694 17 6 3.4130 -9.4491 -1.7567 18 6 4.0968 -9.4684 -2.9720 19 6 4.4618 -10.6813 -3.5170 20 7 4.1619 -11.8143 -2.9094 21 6 3.5105 -11.8385 -1.7610 22 17 3.1474 -13.3625 -1.0131 23 6 3.1155 -10.6659 -1.1469 24 6 4.0847 -4.7094 -1.1307 25 6 2.9777 -3.6496 -1.2475 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5566 0.8904 29 1 0.8802 -5.1266 -0.6102 30 1 0.9153 -4.8186 1.1430 31 1 2.0630 -6.9692 0.4766 32 1 3.1386 -5.8258 1.3230 33 1 2.2760 -8.2160 -0.5616 34 1 4.3418 -8.5457 -3.4768 35 1 4.9955 -10.7049 -4.4556 36 1 2.5833 -10.6920 -0.2075 37 1 4.8030 -4.4104 -0.3675 38 1 4.5901 -4.8200 -2.0901 39 1 2.3164 -3.9001 -2.0771 40 1 3.4282 -2.6727 -1.4233 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879072339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:55 Heat of formation + Delta-G solvation = 8.825487 kcal Electronic energy + Delta-G solvation = -24494.848334 eV Core-core repulsion = 20756.453602 eV Total energy + Delta-G solvation = -3738.394733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27722 -40.86461 -39.23962 -37.68289 -36.53882 -36.12152 -34.43651 -32.50433 -32.04294 -31.67992 -29.87485 -27.31457 -25.26281 -24.78631 -24.30582 -23.77856 -22.28642 -20.82985 -19.79126 -18.91454 -18.44089 -17.44341 -17.32142 -17.04906 -16.66182 -16.37925 -16.03165 -15.83469 -15.61446 -15.39328 -15.31474 -15.21352 -14.86977 -14.53892 -14.06773 -13.55741 -13.33595 -13.08051 -12.85143 -12.77931 -12.56961 -12.41929 -12.34655 -12.34159 -12.22079 -12.17247 -11.75737 -11.45492 -11.26509 -10.61776 -10.58464 -10.11914 -10.03639 -9.60985 -9.05667 -8.20589 -6.30170 -0.09428 0.00446 0.69449 1.30330 1.43528 1.45324 1.53115 1.81427 2.40621 2.50890 2.63979 3.11898 3.20990 3.49491 3.76080 3.86162 3.88893 3.99524 4.04607 4.13244 4.23606 4.40158 4.42829 4.54580 4.61083 4.69929 4.82527 4.90288 4.94698 5.00861 5.09360 5.17155 5.22037 5.37591 5.57827 5.62637 5.69358 6.03587 6.23811 6.56219 6.61422 6.70059 6.85462 7.17271 7.39766 8.90059 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.002202 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.629499 B =12710.826885 C =13220.228784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.539 5.539 11 C 0.035 3.965 12 C 0.122 3.878 13 N -0.617 5.617 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.665 5.665 17 C 0.220 3.780 18 C -0.199 4.199 19 C 0.136 3.864 20 N -0.518 5.518 21 C 0.182 3.818 22 Cl -0.025 7.025 23 C -0.184 4.184 24 C 0.145 3.855 25 C 0.054 3.946 26 H 0.264 0.736 27 H -0.041 1.041 28 H 0.011 0.989 29 H 0.023 0.977 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.426 0.574 34 H 0.163 0.837 35 H 0.191 0.809 36 H 0.175 0.825 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.013 0.987 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -22.236 -0.802 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.094 4.094 12 C 0.000 4.000 13 N -0.353 5.353 14 C 0.411 3.589 15 O -0.477 6.477 16 N -0.314 5.314 17 C 0.114 3.886 18 C -0.222 4.222 19 C -0.019 4.019 20 N -0.232 5.232 21 C 0.018 3.982 22 Cl 0.003 6.997 23 C -0.208 4.208 24 C 0.022 3.978 25 C -0.075 4.075 26 H 0.073 0.927 27 H -0.023 1.023 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.268 0.732 34 H 0.180 0.820 35 H 0.208 0.792 36 H 0.192 0.808 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.031 0.969 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.710 -22.851 -1.279 23.850 hybrid contribution -1.341 1.747 0.017 2.202 sum 5.368 -21.104 -1.263 21.813 Atomic orbital electron populations 1.70065 1.07695 1.27931 1.51764 1.25877 0.95687 1.03122 0.94899 0.85481 0.78158 0.78119 0.79140 1.19336 1.21234 1.19214 1.21445 0.93757 0.90976 1.49986 0.91553 1.19357 0.89990 0.88729 0.93603 1.61997 1.27057 1.03085 1.34259 1.22549 0.95737 0.89914 1.01182 1.21973 0.90968 0.98902 0.88177 1.47489 1.49271 1.07382 1.31138 1.15842 0.81114 0.80434 0.81545 1.90806 1.37868 1.83795 1.35191 1.42500 1.34362 1.04824 1.49716 1.17790 0.94589 0.84841 0.91370 1.22898 1.01780 1.01958 0.95531 1.22959 0.94650 0.85119 0.99201 1.67068 1.14437 1.32319 1.09374 1.21450 0.96864 0.87748 0.92143 1.98408 1.92415 1.29715 1.79150 1.21553 1.07039 0.88839 1.03368 1.21707 0.94249 0.79721 1.02141 1.22403 0.95469 0.99582 0.90013 0.92747 1.02313 0.97114 0.95922 0.89103 0.86957 0.88908 0.73203 0.81995 0.79223 0.80783 0.89813 0.88892 0.96883 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.52 -27.99 8.41 25.60 0.22 -27.77 16 8 H 0.07 3.44 7.13 -2.91 -0.02 3.42 16 9 C 0.21 10.37 4.72 85.56 0.40 10.77 16 10 N -0.54 -20.55 4.62 -898.87 -4.15 -24.70 16 11 C 0.04 1.00 5.62 86.38 0.49 1.49 16 12 C 0.12 2.39 6.60 86.35 0.57 2.96 16 13 N -0.62 -14.87 3.00 -835.07 -2.51 -17.38 16 14 C 0.71 17.24 8.21 179.05 1.47 18.71 16 15 O -0.60 -17.99 12.74 -3.97 -0.05 -18.04 16 16 N -0.66 -11.68 5.23 -316.70 -1.66 -13.33 16 17 C 0.22 4.17 6.51 38.47 0.25 4.42 16 18 C -0.20 -4.20 8.92 22.48 0.20 -3.99 16 19 C 0.14 2.58 11.17 84.58 0.94 3.52 16 20 N -0.52 -11.11 10.34 -186.95 -1.93 -13.05 16 21 C 0.18 3.48 7.27 84.64 0.62 4.10 16 22 Cl -0.03 -0.42 29.10 -2.72 -0.08 -0.50 16 23 C -0.18 -2.91 9.80 22.50 0.22 -2.69 16 24 C 0.14 4.04 6.60 86.50 0.57 4.61 16 25 C 0.05 1.92 5.47 86.54 0.47 2.39 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H -0.04 -2.25 8.13 -2.39 -0.02 -2.27 16 28 H 0.01 0.57 7.97 -2.38 -0.02 0.55 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 2.46 7.99 -2.39 -0.02 2.45 16 31 H 0.11 1.24 5.67 -2.38 -0.01 1.23 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.43 4.77 6.40 -92.71 -0.59 4.17 16 34 H 0.16 3.96 5.48 -2.91 -0.02 3.94 16 35 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 38 H 0.09 2.59 7.11 -2.39 -0.02 2.58 16 39 H 0.01 0.48 8.14 -2.38 -0.02 0.47 16 40 H 0.08 3.13 6.67 -2.39 -0.02 3.12 16 Total: -1.00 -67.67 343.48 -0.69 -68.37 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.49 Total: 8.94 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.88 Total: 19.11 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -9.97 Total: -122.55 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.04 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -67.67 -0.69 -68.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879072339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.193 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds