Wall clock time and date at job start Tue Mar 31 2020 13:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35247 * 126.06846 * 2 1 4 4 C 1.40399 * 107.86455 * 179.97438 * 3 2 1 5 5 N 1.40200 * 125.97127 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00011 * 0.02562 * 5 4 3 7 7 O 1.21590 * 119.99835 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.47339 * 121.36851 * 180.02562 * 8 6 5 10 10 C 1.53099 * 107.89324 * 118.16617 * 9 8 6 11 11 C 1.49972 * 110.39959 * 45.48097 * 10 9 8 12 12 C 1.29618 * 124.59614 * 341.00485 * 11 10 9 13 13 Cl 1.73594 * 118.19060 * 180.87709 * 12 11 10 14 14 C 1.47002 * 121.37061 * 359.71680 * 8 6 5 15 15 N 1.31210 * 108.05891 * 0.02562 * 4 3 2 16 16 N 1.34961 * 126.07238 * 179.68801 * 2 1 3 17 17 C 1.46507 * 125.97407 * 359.97438 * 16 2 1 18 18 C 1.50698 * 109.47127 * 89.99901 * 17 16 2 19 19 H 1.08001 * 119.99966 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00123 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47308 * 90.00328 * 22 20 18 24 24 H 1.48498 * 109.47013 * 209.99955 * 22 20 18 25 25 H 1.48497 * 109.47574 * 329.99916 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.02478 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02578 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02559 * 1 2 3 29 29 H 1.07997 * 126.06784 * 359.95455 * 3 2 1 30 30 H 0.97002 * 119.99584 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.77698 * 237.76803 * 9 8 6 32 32 H 1.09006 * 109.77296 * 358.56702 * 9 8 6 33 33 H 1.08994 * 109.31520 * 165.76694 * 10 9 8 34 34 H 1.09001 * 109.31236 * 285.38674 * 10 9 8 35 35 H 1.08006 * 117.69765 * 161.02968 * 11 10 9 36 36 H 1.08991 * 109.52732 * 342.88312 * 14 8 6 37 37 H 1.08998 * 109.51888 * 103.07388 * 14 8 6 38 38 H 1.09002 * 109.46931 * 210.00083 * 17 16 2 39 39 H 1.08997 * 109.47037 * 329.99966 * 17 16 2 40 40 H 0.96997 * 119.99957 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7738 1.4752 0.0003 6 6 4.6370 2.8160 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6048 0.0001 9 6 5.6154 5.0738 0.0002 10 6 6.2643 5.5960 1.2847 11 6 7.5822 4.9190 1.5173 12 6 7.9424 3.8014 0.9684 13 17 9.5009 3.1534 1.3741 14 6 7.0849 3.0350 0.0070 15 7 3.6337 -0.6575 0.0004 16 7 2.3017 -1.0908 0.0059 17 6 1.8501 -2.4845 0.0141 18 6 1.6947 -2.9705 -1.4039 19 1 1.9103 -2.3074 -2.2287 20 6 1.2773 -4.2617 -1.6484 21 7 1.0142 -5.0690 -0.6440 22 14 1.0854 -4.8642 -3.4060 23 1 2.3665 -5.4551 -3.8695 24 1 0.0166 -5.8936 -3.4625 25 1 0.7205 -3.7232 -4.2835 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 1.9720 2.1211 -0.0007 30 1 5.6587 1.0779 0.0004 31 1 6.1323 5.4841 -0.8674 32 1 4.5644 5.3618 -0.0256 33 1 6.4216 6.6711 1.1979 34 1 5.6050 5.3952 2.1291 35 1 8.2799 5.3961 2.1896 36 1 7.0392 1.9902 0.3137 37 1 7.5140 3.1038 -0.9926 38 1 2.5849 -3.1016 0.5312 39 1 0.8917 -2.5529 0.5286 40 1 0.7202 -5.9772 -0.8160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879078995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:27 Heat of formation + Delta-G solvation = 69.968190 kcal Electronic energy + Delta-G solvation = -24536.123138 eV Core-core repulsion = 20800.379752 eV Total energy + Delta-G solvation = -3735.743386 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99667 -40.09005 -38.10542 -36.63775 -34.96073 -33.61298 -33.00790 -31.56274 -31.12129 -30.69450 -26.91266 -26.35899 -26.03219 -24.21819 -22.94822 -21.46536 -19.88890 -19.82678 -18.33806 -17.80897 -16.68511 -16.62793 -16.26129 -15.62120 -15.52639 -14.96155 -14.82700 -14.46103 -14.31589 -14.14618 -13.99006 -13.19462 -13.04353 -12.79836 -12.47288 -12.34868 -12.26078 -12.17595 -11.96616 -11.65664 -11.40351 -11.38047 -11.29234 -11.08873 -10.82742 -10.46099 -10.25374 -10.05008 -9.68672 -9.53869 -9.33974 -9.05666 -8.63485 -7.92024 -7.41511 -6.24640 -4.32113 1.41239 1.66493 2.27298 2.60765 3.04029 3.22285 3.28462 3.30507 3.36420 3.78642 4.01941 4.07584 4.31652 4.52398 4.68472 4.68723 4.90401 4.96390 5.09131 5.15395 5.34729 5.48042 5.52868 5.68878 5.71928 5.91313 5.95799 5.99346 6.12990 6.24415 6.46068 6.56780 6.60252 6.89346 7.01560 7.08478 7.49190 7.68116 7.81285 7.90171 8.07307 8.47466 8.67024 8.76420 9.34122 10.82628 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002661 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.307147 B =10517.964424 C =11371.957705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.288 4.288 4 C 0.280 3.720 5 N -0.643 5.643 6 C 0.723 3.277 7 O -0.559 6.559 8 N -0.628 5.628 9 C 0.126 3.874 10 C -0.103 4.103 11 C -0.125 4.125 12 C -0.091 4.091 13 Cl -0.080 7.080 14 C 0.151 3.849 15 N -0.322 5.322 16 N -0.317 5.317 17 C 0.259 3.741 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.405 0.595 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 20.677 3.776 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.294 5.294 6 C 0.424 3.576 7 O -0.433 6.433 8 N -0.368 5.368 9 C 0.003 3.997 10 C -0.141 4.141 11 C -0.145 4.145 12 C -0.118 4.118 13 Cl -0.052 7.052 14 C 0.027 3.973 15 N -0.153 5.153 16 N -0.100 5.100 17 C 0.141 3.859 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.197 1.197 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.242 0.758 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.740 19.601 3.857 23.171 hybrid contribution 0.416 -0.142 -0.806 0.918 sum 12.156 19.460 3.050 23.146 Atomic orbital electron populations 1.20332 0.87892 1.02803 1.03161 1.21056 0.94897 0.87139 1.00888 1.21212 0.89620 0.99799 1.21330 1.18660 0.86483 0.89299 1.02897 1.41547 1.07735 1.03687 1.76406 1.15371 0.83914 0.80452 0.77828 1.90874 1.22680 1.73257 1.56535 1.47249 1.03649 1.06736 1.79124 1.21638 1.03700 0.77428 0.96889 1.20891 0.93491 1.00290 0.99447 1.22161 0.98447 0.94991 0.98855 1.22400 0.88909 0.97789 1.02711 1.98397 1.27274 1.86839 1.92642 1.20348 0.81489 0.97149 0.98320 1.77254 0.99990 1.08245 1.29799 1.48973 1.00857 1.07763 1.52378 1.19683 0.95959 0.71332 0.98919 1.21327 1.46713 0.97899 0.91430 0.91749 1.24927 0.94690 0.96110 0.98074 1.69919 1.45004 1.07230 1.30866 0.86355 0.77997 0.78590 0.83744 1.20358 1.20891 1.19655 0.90432 0.90827 0.90872 0.82249 0.75831 0.90636 0.87562 0.88789 0.89248 0.86138 0.88644 0.89009 0.93031 0.92777 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.01 0.36 -1.07 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -5.98 9.52 -39.83 -0.38 -6.36 16 4 C 0.28 5.76 8.11 -154.36 -1.25 4.51 16 5 N -0.64 -10.29 5.36 -15.50 -0.08 -10.38 16 6 C 0.72 10.81 8.31 -86.92 -0.72 10.09 16 7 O -0.56 -9.96 12.96 5.29 0.07 -9.89 16 8 N -0.63 -6.68 2.97 -180.11 -0.54 -7.21 16 9 C 0.13 1.02 6.50 -3.53 -0.02 1.00 16 10 C -0.10 -0.64 6.28 -28.18 -0.18 -0.82 16 11 C -0.13 -0.87 9.48 -35.99 -0.34 -1.22 16 12 C -0.09 -0.72 6.33 -36.03 -0.23 -0.95 16 13 Cl -0.08 -0.66 28.76 -51.86 -1.49 -2.15 16 14 C 0.15 1.27 6.28 -5.31 -0.03 1.24 16 15 N -0.32 -7.49 12.59 31.44 0.40 -7.09 16 16 N -0.32 -7.56 3.59 -58.32 -0.21 -7.77 16 17 C 0.26 6.65 5.99 -5.19 -0.03 6.62 16 18 C -0.54 -14.77 9.39 -34.44 -0.32 -15.10 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 22 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.26 7.06 -51.93 -0.37 0.89 16 29 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 30 H 0.40 5.39 6.46 -40.82 -0.26 5.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 0.98 7.07 -51.93 -0.37 0.61 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 0.72 7.95 -52.48 -0.42 0.30 16 36 H 0.10 0.80 5.95 -51.93 -0.31 0.49 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.05 1.37 7.03 -51.93 -0.37 1.01 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -32.44 349.61 -9.59 -42.03 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.90 Total: 4.44 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.81 Total: 1.01 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.30 Total: -56.82 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.49 Total: -2.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.44 -9.59 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879078995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.998 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds