Wall clock time and date at job start Tue Mar 31 2020 13:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35247 * 126.06846 * 2 1 4 4 C 1.40399 * 107.86455 * 179.97438 * 3 2 1 5 5 N 1.40200 * 125.97127 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00011 * 0.02562 * 5 4 3 7 7 O 1.21590 * 119.99835 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.47339 * 121.36851 * 180.02562 * 8 6 5 10 10 C 1.53099 * 107.89324 * 118.16617 * 9 8 6 11 11 C 1.49972 * 110.39959 * 45.48097 * 10 9 8 12 12 C 1.29618 * 124.59614 * 341.00485 * 11 10 9 13 13 Cl 1.73594 * 118.19060 * 180.87709 * 12 11 10 14 14 C 1.47002 * 121.37061 * 359.71680 * 8 6 5 15 15 N 1.31210 * 108.05891 * 0.02562 * 4 3 2 16 16 N 1.34961 * 126.07238 * 179.68801 * 2 1 3 17 17 C 1.46507 * 125.97407 * 359.97438 * 16 2 1 18 18 C 1.50698 * 109.47127 * 89.99901 * 17 16 2 19 19 H 1.08001 * 119.99966 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00123 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47308 * 90.00328 * 22 20 18 24 24 H 1.48498 * 109.47013 * 209.99955 * 22 20 18 25 25 H 1.48497 * 109.47574 * 329.99916 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.02478 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02578 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02559 * 1 2 3 29 29 H 1.07997 * 126.06784 * 359.95455 * 3 2 1 30 30 H 0.97002 * 119.99584 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.77698 * 237.76803 * 9 8 6 32 32 H 1.09006 * 109.77296 * 358.56702 * 9 8 6 33 33 H 1.08994 * 109.31520 * 165.76694 * 10 9 8 34 34 H 1.09001 * 109.31236 * 285.38674 * 10 9 8 35 35 H 1.08006 * 117.69765 * 161.02968 * 11 10 9 36 36 H 1.08991 * 109.52732 * 342.88312 * 14 8 6 37 37 H 1.08998 * 109.51888 * 103.07388 * 14 8 6 38 38 H 1.09002 * 109.46931 * 210.00083 * 17 16 2 39 39 H 1.08997 * 109.47037 * 329.99966 * 17 16 2 40 40 H 0.96997 * 119.99957 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7738 1.4752 0.0003 6 6 4.6370 2.8160 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6048 0.0001 9 6 5.6154 5.0738 0.0002 10 6 6.2643 5.5960 1.2847 11 6 7.5822 4.9190 1.5173 12 6 7.9424 3.8014 0.9684 13 17 9.5009 3.1534 1.3741 14 6 7.0849 3.0350 0.0070 15 7 3.6337 -0.6575 0.0004 16 7 2.3017 -1.0908 0.0059 17 6 1.8501 -2.4845 0.0141 18 6 1.6947 -2.9705 -1.4039 19 1 1.9103 -2.3074 -2.2287 20 6 1.2773 -4.2617 -1.6484 21 7 1.0142 -5.0690 -0.6440 22 14 1.0854 -4.8642 -3.4060 23 1 2.3665 -5.4551 -3.8695 24 1 0.0166 -5.8936 -3.4625 25 1 0.7205 -3.7232 -4.2835 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 1.9720 2.1211 -0.0007 30 1 5.6587 1.0779 0.0004 31 1 6.1323 5.4841 -0.8674 32 1 4.5644 5.3618 -0.0256 33 1 6.4216 6.6711 1.1979 34 1 5.6050 5.3952 2.1291 35 1 8.2799 5.3961 2.1896 36 1 7.0392 1.9902 0.3137 37 1 7.5140 3.1038 -0.9926 38 1 2.5849 -3.1016 0.5312 39 1 0.8917 -2.5529 0.5286 40 1 0.7202 -5.9772 -0.8160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879078995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:26 Heat of formation + Delta-G solvation = 51.195776 kcal Electronic energy + Delta-G solvation = -24536.937171 eV Core-core repulsion = 20800.379752 eV Total energy + Delta-G solvation = -3736.557419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39799 -41.36975 -38.98885 -37.33080 -36.40269 -35.38357 -34.10042 -32.89429 -32.55161 -31.87229 -28.65824 -27.87085 -27.05603 -25.24164 -24.53007 -22.68808 -21.31395 -21.15041 -19.51000 -18.78371 -18.64051 -17.84662 -17.29849 -17.07554 -16.62077 -16.34019 -15.99209 -15.83533 -15.46584 -15.35807 -14.87442 -14.69969 -14.32449 -13.90879 -13.76759 -13.70856 -13.54392 -13.36659 -13.11061 -12.96879 -12.83859 -12.67121 -12.58636 -12.24360 -12.11508 -12.03036 -11.90867 -11.58077 -11.37436 -11.14405 -10.72906 -10.00797 -9.88446 -9.56409 -9.08543 -8.31852 -6.49504 0.82829 0.88620 1.03089 1.23077 1.38588 1.39488 1.50974 1.62648 1.98366 2.32587 2.35281 2.73976 2.97815 3.42658 3.83007 3.92341 4.02018 4.07621 4.17482 4.33833 4.38306 4.42619 4.58251 4.73354 4.76388 4.85969 4.89820 4.92435 4.98871 5.01224 5.09477 5.17436 5.19035 5.42667 5.43945 5.54765 5.69274 5.82126 5.94844 6.27678 6.51556 6.63515 7.05723 7.21387 7.28668 8.74031 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002661 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.307147 B =10517.964424 C =11371.957705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.296 4.296 4 C 0.290 3.710 5 N -0.638 5.638 6 C 0.720 3.280 7 O -0.590 6.590 8 N -0.618 5.618 9 C 0.119 3.881 10 C -0.097 4.097 11 C -0.116 4.116 12 C -0.104 4.104 13 Cl -0.084 7.084 14 C 0.147 3.853 15 N -0.360 5.360 16 N -0.343 5.343 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.050 0.950 20 C 0.023 3.977 21 N -0.919 5.919 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.269 1.269 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.168 0.832 30 H 0.416 0.584 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.372 22.426 3.102 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.326 4.326 4 C 0.035 3.965 5 N -0.291 5.291 6 C 0.422 3.578 7 O -0.467 6.467 8 N -0.356 5.356 9 C -0.003 4.003 10 C -0.135 4.135 11 C -0.135 4.135 12 C -0.131 4.131 13 Cl -0.056 7.056 14 C 0.024 3.976 15 N -0.190 5.190 16 N -0.125 5.125 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.068 0.932 20 C -0.178 4.178 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.194 1.194 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.185 0.815 30 H 0.256 0.744 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.346 21.396 3.195 24.909 hybrid contribution 0.330 -0.531 -0.546 0.830 sum 12.677 20.865 2.649 24.557 Atomic orbital electron populations 1.20471 0.85299 1.04224 1.03959 1.21743 0.96664 0.86396 0.99424 1.21385 0.89754 0.99915 1.21590 1.18948 0.87996 0.88946 1.00615 1.41581 1.07096 1.03960 1.76446 1.15525 0.84622 0.80061 0.77628 1.90838 1.24285 1.73626 1.57968 1.47302 1.03365 1.07468 1.77445 1.21924 1.03644 0.75683 0.98999 1.20905 0.92628 1.02001 0.97951 1.22371 0.98692 0.94411 0.98053 1.22306 0.88917 0.98258 1.03644 1.98398 1.27501 1.87011 1.92685 1.20497 0.80365 0.97053 0.99678 1.77172 1.00143 1.09690 1.32025 1.48771 1.01622 1.07513 1.54604 1.19246 0.94916 0.72398 0.97790 1.21444 1.47474 0.98337 0.91801 0.93206 1.25731 0.93956 0.95979 1.02167 1.70001 1.45155 1.07678 1.32849 0.85355 0.78240 0.78199 0.78701 1.20041 1.19533 1.19364 0.89794 0.87531 0.91279 0.81501 0.74449 0.88314 0.88804 0.85617 0.90016 0.84780 0.88945 0.87258 0.95810 0.92936 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 10.11 71.24 0.72 -2.02 16 2 C 0.09 3.75 6.92 41.39 0.29 4.04 16 3 C -0.30 -12.25 9.52 22.11 0.21 -12.04 16 4 C 0.29 12.04 8.11 133.31 1.08 13.13 16 5 N -0.64 -20.30 5.36 -321.23 -1.72 -22.02 16 6 C 0.72 21.03 8.31 179.05 1.49 22.52 16 7 O -0.59 -20.76 12.96 -4.00 -0.05 -20.81 16 8 N -0.62 -12.19 2.97 -842.01 -2.50 -14.69 16 9 C 0.12 1.66 6.50 86.25 0.56 2.23 16 10 C -0.10 -0.94 6.28 29.65 0.19 -0.76 16 11 C -0.12 -1.31 9.48 26.84 0.25 -1.05 16 12 C -0.10 -1.44 6.33 26.81 0.17 -1.27 16 13 Cl -0.08 -1.27 28.76 -2.72 -0.08 -1.35 16 14 C 0.15 2.24 6.28 85.29 0.54 2.77 16 15 N -0.36 -17.15 12.59 -54.43 -0.69 -17.83 16 16 N -0.34 -16.78 3.59 -338.43 -1.22 -17.99 16 17 C 0.28 14.68 5.99 85.63 0.51 15.19 16 18 C -0.55 -31.13 9.39 25.60 0.24 -30.89 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.02 1.24 5.46 84.66 0.46 1.70 16 21 N -0.92 -52.08 13.29 21.45 0.28 -51.80 16 22 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.07 2.37 7.06 -2.38 -0.02 2.35 16 29 H 0.17 6.68 5.91 -2.91 -0.02 6.66 16 30 H 0.42 10.98 6.46 -92.71 -0.60 10.38 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 1.61 7.07 -2.38 -0.02 1.59 16 33 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.13 1.19 7.95 -2.91 -0.02 1.16 16 36 H 0.09 1.46 5.95 -2.39 -0.01 1.44 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 2.76 7.03 -2.39 -0.02 2.75 16 40 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.66 349.61 3.25 -67.41 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.49 Total: 20.33 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.71 Total: 13.54 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.84 Total: -124.33 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -70.66 3.25 -67.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879078995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.602 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds