Wall clock time and date at job start Tue Mar 31 2020 13:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 C 1.52996 * 109.42091 * 178.67328 * 12 11 10 14 14 N 1.46494 * 109.47280 * 295.12817 * 13 12 11 15 15 S 1.65603 * 120.00025 * 164.99695 * 14 13 12 16 16 O 1.42105 * 104.27643 * 181.07196 * 15 14 13 17 17 O 1.42097 * 104.27625 * 308.92916 * 15 14 13 18 18 C 1.81398 * 104.44789 * 65.00346 * 15 14 13 19 19 C 1.52997 * 109.47007 * 179.97438 * 18 15 14 20 20 C 1.53008 * 109.47032 * 179.97438 * 19 18 15 21 21 Cl 1.80300 * 109.47040 * 180.02562 * 20 19 18 22 22 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 23 23 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 24 24 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 26 26 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 27 27 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 28 28 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 29 29 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 30 30 H 1.08996 * 109.47035 * 55.12944 * 13 12 11 31 31 H 1.08998 * 109.47266 * 175.12632 * 13 12 11 32 32 H 0.97004 * 120.00358 * 345.00381 * 14 13 12 33 33 H 1.09000 * 109.46890 * 299.99612 * 18 15 14 34 34 H 1.08998 * 109.47475 * 59.99844 * 18 15 14 35 35 H 1.08995 * 109.47543 * 299.99902 * 19 18 15 36 36 H 1.09002 * 109.47312 * 60.00398 * 19 18 15 37 37 H 1.09008 * 109.46792 * 300.00147 * 20 19 18 38 38 H 1.08993 * 109.46928 * 60.00108 * 20 19 18 39 39 H 1.08992 * 109.49619 * 301.41603 * 22 12 11 40 40 H 1.08999 * 109.52313 * 181.33616 * 22 12 11 41 41 H 1.09000 * 109.58664 * 353.42162 * 23 9 7 42 42 H 1.08996 * 109.58580 * 113.70091 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 6 1.0515 -5.6892 2.9798 14 7 1.2346 -7.0352 2.4313 15 16 1.8714 -8.2355 3.3780 16 8 1.9229 -9.3677 2.5208 17 8 3.0587 -7.6671 3.9131 18 6 0.6386 -8.4827 4.6855 19 6 1.1171 -9.5817 5.6364 20 6 0.0775 -9.7898 6.7396 21 17 0.6417 -11.0843 7.8606 22 6 0.4984 -3.3190 2.4146 23 6 0.2263 -2.3402 1.2680 24 1 -0.4849 0.8400 0.0004 25 1 1.0402 -4.0608 -0.8485 26 1 2.7330 -3.5129 -0.7671 27 1 2.3088 -5.6065 0.5685 28 1 2.9057 -4.2544 1.5613 29 1 -0.0271 -5.0411 1.2314 30 1 1.9446 -5.3973 3.5322 31 1 0.1919 -5.6838 3.6500 32 1 0.9830 -7.2234 1.5136 33 1 0.5063 -7.5539 5.2404 34 1 -0.3109 -8.7774 4.2387 35 1 1.2491 -10.5104 5.0813 36 1 2.0667 -9.2874 6.0834 37 1 -0.0541 -8.8609 7.2947 38 1 -0.8722 -10.0839 6.2930 39 1 1.3481 -2.9671 2.9994 40 1 -0.3818 -3.3836 3.0543 41 1 0.0992 -1.3345 1.6685 42 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881987777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:28 Heat of formation + Delta-G solvation = -82.531267 kcal Electronic energy + Delta-G solvation = -23506.508849 eV Core-core repulsion = 19867.303791 eV Total energy + Delta-G solvation = -3639.205059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.106 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.19706 -37.28324 -36.83118 -36.15727 -35.32758 -34.88047 -32.70943 -30.67854 -29.65911 -27.92662 -26.55840 -23.93341 -22.70582 -22.13486 -21.19944 -19.67107 -19.07129 -17.76213 -16.92549 -16.72435 -16.65272 -15.97798 -15.00960 -14.76389 -14.71346 -14.47412 -13.94432 -13.91681 -13.68203 -13.52004 -13.20016 -12.86880 -12.53358 -12.43546 -12.31800 -12.19650 -12.10981 -11.89581 -11.85965 -11.42040 -11.36780 -10.99490 -10.86852 -10.80991 -10.71726 -10.53539 -10.25919 -10.24575 -9.90855 -9.70359 -9.48516 -9.38982 -8.47347 -6.67301 -5.79841 -3.21907 -0.02937 1.72215 2.52756 3.38162 3.43590 3.45407 3.49986 3.83298 4.04650 4.13916 4.18841 4.49444 4.57793 4.76489 4.86789 4.94310 5.09080 5.13181 5.28297 5.32963 5.37935 5.42458 5.60924 5.78388 5.85672 6.03588 6.15807 6.30934 6.49843 6.56539 6.65177 6.74569 6.82035 6.84894 7.00102 7.34481 7.63262 7.79096 8.44965 9.21239 9.84667 10.41373 11.28767 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.002288 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.730705 B =12233.259087 C =12664.068722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.144 3.856 11 C -0.128 4.128 12 C -0.083 4.083 13 C 0.116 3.884 14 N -1.114 6.114 15 S 2.616 3.384 16 O -0.959 6.959 17 O -0.949 6.949 18 C -0.638 4.638 19 C -0.124 4.124 20 C -0.025 4.025 21 Cl -0.182 7.182 22 C -0.135 4.135 23 C 0.171 3.829 24 H 0.254 0.746 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.419 0.581 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -19.034 12.512 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.010 4.010 14 N -0.874 5.874 15 S 2.707 3.293 16 O -0.949 6.949 17 O -0.939 6.939 18 C -0.766 4.766 19 C -0.163 4.163 20 C -0.089 4.089 21 Cl -0.156 7.156 22 C -0.175 4.175 23 C 0.045 3.955 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.254 0.746 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.946 -19.357 12.635 23.197 hybrid contribution -0.486 0.980 -0.034 1.095 sum -2.432 -18.377 12.601 22.415 Atomic orbital electron populations 1.70017 1.05249 1.25577 1.54061 1.25042 0.95295 0.98412 1.00967 0.86368 0.78908 0.83324 0.78162 1.20896 1.21671 1.21032 1.19152 0.92532 0.84858 1.41548 0.91783 1.44043 1.35893 1.01550 1.50047 1.20905 0.97541 0.86957 0.92825 1.22123 0.96886 0.99010 0.98761 1.21296 0.98983 0.94846 0.95179 1.21583 1.01116 0.80915 0.97410 1.55509 1.83664 1.22535 1.25715 1.04820 0.75699 0.73406 0.75392 1.93612 1.86711 1.51213 1.63353 1.93627 1.42156 1.77268 1.80883 1.30707 1.20072 1.07981 1.17875 1.21611 1.00113 0.98365 0.96166 1.24324 0.99207 0.92980 0.92374 1.98738 1.91551 1.57678 1.67621 1.22219 1.00238 0.94920 1.00164 1.20754 0.88664 0.98139 0.87926 0.93623 0.96629 0.92885 0.93033 0.92068 0.91165 0.90270 0.92252 0.74557 0.84506 0.84461 0.89003 0.88920 0.88252 0.88325 0.92309 0.93153 0.89444 0.96468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 11.20 55.49 0.62 -25.19 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.47 2.99 -172.32 -0.52 -14.99 16 10 C 0.14 2.94 6.51 -3.71 -0.02 2.91 16 11 C -0.13 -2.11 5.28 -26.45 -0.14 -2.25 16 12 C -0.08 -1.20 2.18 -90.42 -0.20 -1.39 16 13 C 0.12 1.25 5.52 -4.05 -0.02 1.23 16 14 N -1.11 -10.65 5.40 -10.62 -0.06 -10.71 16 15 S 2.62 24.80 5.46 -107.50 -0.59 24.21 16 16 O -0.96 -11.94 18.08 -57.54 -1.04 -12.98 16 17 O -0.95 -12.61 17.50 -57.54 -1.01 -13.62 16 18 C -0.64 -3.39 6.07 37.16 0.23 -3.16 16 19 C -0.12 -0.72 5.35 -26.73 -0.14 -0.86 16 20 C -0.02 -0.12 6.66 37.16 0.25 0.12 16 21 Cl -0.18 -1.36 29.15 -51.86 -1.51 -2.87 16 22 C -0.14 -2.30 5.36 -26.61 -0.14 -2.45 16 23 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 24 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 27 H 0.05 0.74 7.52 -51.93 -0.39 0.35 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.42 3.75 8.34 -34.47 -0.29 3.46 16 33 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.37 8.14 -51.92 -0.42 -0.06 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -34.18 362.98 -10.95 -45.13 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.85 Total: -1.92 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.45 Total: -9.01 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.05 Total: -50.89 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -2.05 Total: -26.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 24.80 SS G_CDS: -0.59 Total: 24.21 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.51 Total: -2.87 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.18 -10.95 -45.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881987777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.400 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds