Wall clock time and date at job start Tue Mar 31 2020 13:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47156 * 270.00089 * 3 2 1 5 5 H 1.48500 * 109.46828 * 29.99928 * 3 2 1 6 6 H 1.48496 * 109.46803 * 149.99800 * 3 2 1 7 7 C 1.38809 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 163.06557 * 7 2 1 9 9 N 1.36935 * 120.00294 * 343.06958 * 7 2 1 10 10 C 1.46922 * 120.62948 * 331.83844 * 9 7 2 11 11 C 1.53192 * 108.77391 * 233.62969 * 10 9 7 12 12 C 1.53037 * 109.31440 * 305.36464 * 11 10 9 13 13 C 1.52996 * 109.46432 * 181.38749 * 12 11 10 14 14 N 1.46499 * 109.47545 * 174.97273 * 13 12 11 15 15 C 1.34772 * 120.00352 * 179.97438 * 14 13 12 16 16 O 1.21531 * 119.99892 * 359.97438 * 15 14 13 17 17 C 1.48060 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.33034 * 120.10797 * 359.97438 * 17 15 14 19 19 C 1.31768 * 119.94188 * 179.97438 * 18 17 15 20 20 C 1.38775 * 120.16302 * 0.02562 * 19 18 17 21 21 N 1.32093 * 120.21749 * 359.97438 * 20 19 18 22 22 C 1.32229 * 120.06210 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.08470 * 179.97438 * 22 21 20 24 24 C 1.53037 * 109.52899 * 61.37003 * 12 11 10 25 25 C 1.46928 * 120.63070 * 151.85637 * 9 7 2 26 26 H 0.96995 * 120.00550 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.58597 * 113.84090 * 10 9 7 28 28 H 1.09002 * 109.70530 * 353.48247 * 10 9 7 29 29 H 1.09000 * 109.49788 * 185.41005 * 11 10 9 30 30 H 1.08997 * 109.49837 * 65.31473 * 11 10 9 31 31 H 1.09003 * 109.45728 * 301.36077 * 12 11 10 32 32 H 1.09000 * 109.47048 * 54.96800 * 13 12 11 33 33 H 1.09009 * 109.47191 * 294.97356 * 13 12 11 34 34 H 0.96997 * 119.99794 * 0.02562 * 14 13 12 35 35 H 1.07993 * 119.91259 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.88663 * 179.72017 * 20 19 18 37 37 H 1.09006 * 109.49726 * 58.57958 * 24 12 11 38 38 H 1.08994 * 109.50343 * 178.67653 * 24 12 11 39 39 H 1.08994 * 109.59128 * 246.15841 * 25 9 7 40 40 H 1.09004 * 109.58670 * 6.44320 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2719 9 7 1.3702 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2683 11 6 0.4985 -3.3181 2.4153 12 6 0.8136 -4.7000 1.8381 13 6 1.0520 -5.6879 2.9817 14 7 1.2349 -7.0343 2.4339 15 6 1.4609 -8.0736 3.2615 16 8 1.5135 -7.8939 4.4623 17 6 1.6463 -9.4342 2.7079 18 7 1.5897 -9.6334 1.3937 19 6 1.7557 -10.8456 0.9045 20 6 1.9889 -11.9156 1.7568 21 7 2.0464 -11.7251 3.0626 22 6 1.8811 -10.5124 3.5631 23 17 1.9558 -10.2615 5.2792 24 6 2.0689 -4.6163 0.9666 25 6 1.8145 -3.6530 -0.1971 26 1 -0.4851 0.8400 0.0004 27 1 -0.6766 -2.6412 0.7375 28 1 0.0967 -1.3344 1.6686 29 1 -0.3818 -3.3830 3.0547 30 1 1.3482 -2.9658 3.0001 31 1 -0.0264 -5.0408 1.2329 32 1 0.1925 -5.6820 3.6520 33 1 1.9454 -5.3959 3.5339 34 1 1.1941 -7.1775 1.4754 35 1 1.7092 -11.0067 -0.1623 36 1 2.1198 -12.9080 1.3513 37 1 2.9037 -4.2515 1.5652 38 1 2.3064 -5.6052 0.5747 39 1 1.0410 -4.0614 -0.8473 40 1 2.7337 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906799391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:07 Heat of formation + Delta-G solvation = 32.325102 kcal Electronic energy + Delta-G solvation = -24544.611975 eV Core-core repulsion = 20807.236262 eV Total energy + Delta-G solvation = -3737.375713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.76183 -39.57647 -37.82661 -37.07838 -35.17387 -34.83579 -32.87348 -32.01426 -30.75731 -29.72512 -27.28411 -25.82421 -24.96933 -23.86746 -22.29219 -21.33954 -20.86244 -19.22866 -18.60991 -18.21540 -17.60175 -16.73190 -16.10824 -15.81180 -15.55505 -14.97763 -14.81509 -14.39245 -13.97089 -13.68854 -13.55269 -13.43184 -13.14616 -12.63209 -12.41170 -12.40050 -12.31620 -11.92207 -11.75833 -11.51617 -11.33379 -10.99064 -10.70624 -10.52396 -10.44118 -10.24238 -10.22159 -9.92540 -9.75134 -9.61579 -9.54171 -9.40381 -9.04221 -8.46459 -6.66196 -5.78718 -3.20923 -0.24807 0.33037 1.30801 2.38193 2.78031 3.21682 3.37509 3.43889 3.44790 3.47341 3.61076 3.89231 4.40339 4.47324 4.50181 4.67915 5.08687 5.21415 5.37717 5.41380 5.47657 5.60010 5.84717 5.90305 6.03414 6.12020 6.32167 6.33634 6.39515 6.46352 6.59980 6.68018 6.76343 6.81268 6.88638 6.98507 7.35535 7.41034 7.66200 7.79897 7.98679 8.45828 9.22083 9.85673 10.42365 11.29864 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002427 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.231664 B =11531.847153 C =12086.609124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.122 3.878 14 N -0.699 5.699 15 C 0.563 3.437 16 O -0.511 6.511 17 C 0.050 3.950 18 N -0.396 5.396 19 C 0.052 3.948 20 C 0.091 3.909 21 N -0.437 5.437 22 C 0.167 3.833 23 Cl 0.030 6.970 24 C -0.128 4.128 25 C 0.146 3.854 26 H 0.254 0.746 27 H 0.017 0.983 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.016 0.984 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -24.139 3.448 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.109 4.109 13 C -0.001 4.001 14 N -0.350 5.350 15 C 0.346 3.654 16 O -0.386 6.386 17 C -0.092 4.092 18 N -0.114 5.114 19 C -0.111 4.111 20 C -0.071 4.071 21 N -0.154 5.154 22 C 0.000 4.000 23 Cl 0.059 6.941 24 C -0.167 4.167 25 C 0.019 3.981 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.204 0.796 36 H 0.203 0.797 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.072 -23.736 4.524 24.252 hybrid contribution 0.401 0.573 -0.493 0.856 sum 2.474 -23.163 4.031 23.641 Atomic orbital electron populations 1.70026 1.05259 1.25494 1.54010 1.25036 0.95273 0.98397 1.00956 0.86323 0.79203 0.83722 0.77693 1.21427 1.21554 1.20499 1.19168 0.92519 0.84877 1.41579 0.91800 1.44047 1.35914 1.01507 1.50061 1.20754 0.88610 0.98150 0.87884 1.22180 1.00399 0.94536 1.00118 1.21319 0.98913 0.95329 0.95356 1.21712 1.01913 0.79507 0.96958 1.45940 1.70482 1.07599 1.11016 1.17479 0.78654 0.82890 0.86426 1.90899 1.50030 1.84005 1.13626 1.22039 1.01357 0.95975 0.89825 1.68521 1.07170 1.24301 1.11361 1.24032 0.96077 0.88116 1.02873 1.24145 0.93167 1.01799 0.87977 1.68051 1.10801 1.21538 1.14962 1.22840 0.96234 0.90114 0.90764 1.98489 1.95164 1.95489 1.04926 1.22083 0.96953 0.98820 0.98868 1.20884 0.97531 0.86981 0.92686 0.93647 0.96451 0.89404 0.93006 0.92331 0.91180 0.91289 0.91113 0.75354 0.79580 0.79709 0.92148 0.93379 0.96574 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 11.19 55.49 0.62 -25.40 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.55 2.99 -172.32 -0.52 -15.06 16 10 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 11 C -0.13 -2.40 5.36 -26.61 -0.14 -2.55 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.12 1.68 5.06 -4.04 -0.02 1.66 16 14 N -0.70 -8.82 5.26 -61.18 -0.32 -9.14 16 15 C 0.56 7.59 7.80 -12.23 -0.10 7.49 16 16 O -0.51 -8.01 13.97 5.34 0.07 -7.93 16 17 C 0.05 0.58 6.75 -82.81 -0.56 0.03 16 18 N -0.40 -3.78 9.71 -9.59 -0.09 -3.87 16 19 C 0.05 0.31 11.22 -17.38 -0.20 0.11 16 20 C 0.09 0.53 11.23 -17.24 -0.19 0.34 16 21 N -0.44 -4.22 10.48 -9.82 -0.10 -4.32 16 22 C 0.17 1.92 7.32 -16.87 -0.12 1.80 16 23 Cl 0.03 0.37 26.19 -51.86 -1.36 -0.99 16 24 C -0.13 -2.08 5.25 -26.61 -0.14 -2.22 16 25 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.41 4.70 7.00 -40.82 -0.29 4.41 16 35 H 0.19 0.36 8.06 -52.49 -0.42 -0.07 16 36 H 0.19 0.28 8.06 -52.48 -0.42 -0.15 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.66 7.15 -51.93 -0.37 0.29 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -32.09 344.80 -8.63 -40.72 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.16 Total: -0.65 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.94 Total: 4.91 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.41 Total: -57.80 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.36 Total: -0.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.09 -8.63 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906799391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.045 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds