Wall clock time and date at job start Tue Mar 31 2020 13:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47156 * 270.00089 * 3 2 1 5 5 H 1.48500 * 109.46828 * 29.99928 * 3 2 1 6 6 H 1.48496 * 109.46803 * 149.99800 * 3 2 1 7 7 C 1.38809 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99742 * 163.06557 * 7 2 1 9 9 N 1.36935 * 120.00294 * 343.06958 * 7 2 1 10 10 C 1.46922 * 120.62948 * 331.83844 * 9 7 2 11 11 C 1.53192 * 108.77391 * 233.62969 * 10 9 7 12 12 C 1.53037 * 109.31440 * 305.36464 * 11 10 9 13 13 C 1.52996 * 109.46432 * 181.38749 * 12 11 10 14 14 N 1.46499 * 109.47545 * 174.97273 * 13 12 11 15 15 C 1.34772 * 120.00352 * 179.97438 * 14 13 12 16 16 O 1.21531 * 119.99892 * 359.97438 * 15 14 13 17 17 C 1.48060 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.33034 * 120.10797 * 359.97438 * 17 15 14 19 19 C 1.31768 * 119.94188 * 179.97438 * 18 17 15 20 20 C 1.38775 * 120.16302 * 0.02562 * 19 18 17 21 21 N 1.32093 * 120.21749 * 359.97438 * 20 19 18 22 22 C 1.32229 * 120.06210 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.08470 * 179.97438 * 22 21 20 24 24 C 1.53037 * 109.52899 * 61.37003 * 12 11 10 25 25 C 1.46928 * 120.63070 * 151.85637 * 9 7 2 26 26 H 0.96995 * 120.00550 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.58597 * 113.84090 * 10 9 7 28 28 H 1.09002 * 109.70530 * 353.48247 * 10 9 7 29 29 H 1.09000 * 109.49788 * 185.41005 * 11 10 9 30 30 H 1.08997 * 109.49837 * 65.31473 * 11 10 9 31 31 H 1.09003 * 109.45728 * 301.36077 * 12 11 10 32 32 H 1.09000 * 109.47048 * 54.96800 * 13 12 11 33 33 H 1.09009 * 109.47191 * 294.97356 * 13 12 11 34 34 H 0.96997 * 119.99794 * 0.02562 * 14 13 12 35 35 H 1.07993 * 119.91259 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.88663 * 179.72017 * 20 19 18 37 37 H 1.09006 * 109.49726 * 58.57958 * 24 12 11 38 38 H 1.08994 * 109.50343 * 178.67653 * 24 12 11 39 39 H 1.08994 * 109.59128 * 246.15841 * 25 9 7 40 40 H 1.09004 * 109.58670 * 6.44320 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2719 9 7 1.3702 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2683 11 6 0.4985 -3.3181 2.4153 12 6 0.8136 -4.7000 1.8381 13 6 1.0520 -5.6879 2.9817 14 7 1.2349 -7.0343 2.4339 15 6 1.4609 -8.0736 3.2615 16 8 1.5135 -7.8939 4.4623 17 6 1.6463 -9.4342 2.7079 18 7 1.5897 -9.6334 1.3937 19 6 1.7557 -10.8456 0.9045 20 6 1.9889 -11.9156 1.7568 21 7 2.0464 -11.7251 3.0626 22 6 1.8811 -10.5124 3.5631 23 17 1.9558 -10.2615 5.2792 24 6 2.0689 -4.6163 0.9666 25 6 1.8145 -3.6530 -0.1971 26 1 -0.4851 0.8400 0.0004 27 1 -0.6766 -2.6412 0.7375 28 1 0.0967 -1.3344 1.6686 29 1 -0.3818 -3.3830 3.0547 30 1 1.3482 -2.9658 3.0001 31 1 -0.0264 -5.0408 1.2329 32 1 0.1925 -5.6820 3.6520 33 1 1.9454 -5.3959 3.5339 34 1 1.1941 -7.1775 1.4754 35 1 1.7092 -11.0067 -0.1623 36 1 2.1198 -12.9080 1.3513 37 1 2.9037 -4.2515 1.5652 38 1 2.3064 -5.6052 0.5747 39 1 1.0410 -4.0614 -0.8473 40 1 2.7337 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906799391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:06 Heat of formation + Delta-G solvation = 9.777951 kcal Electronic energy + Delta-G solvation = -24545.589693 eV Core-core repulsion = 20807.236262 eV Total energy + Delta-G solvation = -3738.353431 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43247 -40.60146 -39.30102 -37.88193 -36.45156 -35.66353 -34.42946 -32.84672 -32.33291 -31.37806 -28.66572 -26.81604 -25.85869 -25.24088 -23.83572 -22.78065 -21.96503 -20.74946 -19.48495 -18.97369 -18.62386 -18.23394 -16.95630 -16.88694 -16.77902 -16.17866 -15.94233 -15.63657 -15.29268 -15.22760 -14.92592 -14.68432 -14.32894 -14.03269 -13.83177 -13.42934 -13.37080 -13.02753 -12.98894 -12.83682 -12.64387 -12.54053 -12.27117 -12.24559 -12.00233 -11.83199 -11.60991 -11.32752 -11.15473 -11.09627 -10.52528 -10.46695 -10.29151 -10.06798 -8.65167 -7.86221 -5.30916 -0.91629 -0.27794 0.56353 1.46326 1.48434 1.56199 1.57776 1.85950 2.49585 2.52251 2.78888 3.04964 3.16691 3.28432 3.72550 3.80007 3.84850 3.90702 3.95942 4.09819 4.27982 4.52476 4.55649 4.69693 4.74400 4.81071 4.95465 5.02629 5.04596 5.14873 5.28481 5.30223 5.33888 5.44313 5.56627 5.67424 5.79491 5.80902 6.23188 6.41347 6.47607 7.01982 7.17295 7.89691 8.40339 9.19971 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002427 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.231664 B =11531.847153 C =12086.609124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.078 4.078 13 C 0.135 3.865 14 N -0.693 5.693 15 C 0.562 3.438 16 O -0.541 6.541 17 C 0.028 3.972 18 N -0.411 5.411 19 C 0.067 3.933 20 C 0.111 3.889 21 N -0.458 5.458 22 C 0.151 3.849 23 Cl 0.007 6.993 24 C -0.114 4.114 25 C 0.141 3.859 26 H 0.249 0.751 27 H -0.002 1.002 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.417 0.583 35 H 0.234 0.766 36 H 0.235 0.765 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.018 0.982 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -26.766 2.131 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.052 3.948 11 C -0.161 4.161 12 C -0.097 4.097 13 C 0.012 3.988 14 N -0.345 5.345 15 C 0.345 3.655 16 O -0.418 6.418 17 C -0.111 4.111 18 N -0.128 5.128 19 C -0.097 4.097 20 C -0.052 4.052 21 N -0.175 5.175 22 C -0.014 4.014 23 Cl 0.036 6.964 24 C -0.153 4.153 25 C 0.015 3.985 26 H 0.059 0.941 27 H 0.016 0.984 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.255 0.745 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.036 0.964 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.917 -26.368 3.225 26.724 hybrid contribution 0.151 1.203 -0.279 1.245 sum 3.068 -25.165 2.945 25.522 Atomic orbital electron populations 1.70173 1.06596 1.25789 1.55537 1.25768 0.96029 1.01402 1.01436 0.85331 0.78083 0.79791 0.77578 1.21084 1.21908 1.19718 1.19492 0.92771 0.86217 1.40731 0.91814 1.44333 1.36004 1.02390 1.50861 1.20563 0.87782 0.97524 0.88960 1.21975 1.01024 0.94836 0.98271 1.21147 0.98749 0.94096 0.95726 1.21411 1.01713 0.79757 0.95929 1.45794 1.70453 1.06939 1.11313 1.17789 0.77827 0.83781 0.86095 1.90878 1.51301 1.84686 1.14895 1.21617 1.03914 0.94743 0.90860 1.68530 1.07897 1.26330 1.10079 1.24904 0.93111 0.86704 1.04978 1.25067 0.89754 1.03945 0.86440 1.68092 1.11736 1.20613 1.17044 1.22776 0.97706 0.90983 0.89928 1.98470 1.95431 1.95686 1.06850 1.21923 0.96898 0.99234 0.97268 1.21059 0.97251 0.85951 0.94201 0.94142 0.98370 0.93038 0.91093 0.92980 0.90538 0.91116 0.91793 0.74521 0.74940 0.74863 0.93024 0.90092 0.96410 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 11.19 21.65 0.24 -55.13 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.45 16 3 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.42 9.58 84.03 0.81 -13.62 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -30.40 2.99 -699.11 -2.09 -32.49 16 10 C 0.18 8.42 5.30 86.36 0.46 8.88 16 11 C -0.12 -4.36 5.36 30.67 0.16 -4.20 16 12 C -0.08 -2.30 2.19 -10.77 -0.02 -2.33 16 13 C 0.14 3.54 5.06 86.38 0.44 3.97 16 14 N -0.69 -16.39 5.26 -465.77 -2.45 -18.84 16 15 C 0.56 14.73 7.80 86.85 0.68 15.41 16 16 O -0.54 -17.06 13.97 -3.81 -0.05 -17.11 16 17 C 0.03 0.62 6.75 41.90 0.28 0.90 16 18 N -0.41 -6.62 9.71 -184.26 -1.79 -8.41 16 19 C 0.07 0.48 11.22 84.83 0.95 1.44 16 20 C 0.11 0.79 11.23 84.78 0.95 1.75 16 21 N -0.46 -7.78 10.48 -184.97 -1.94 -9.71 16 22 C 0.15 3.32 7.32 84.96 0.62 3.94 16 23 Cl 0.01 0.17 26.19 -2.72 -0.07 0.10 16 24 C -0.11 -3.52 5.25 30.67 0.16 -3.36 16 25 C 0.14 5.58 6.52 86.36 0.56 6.14 16 26 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.42 8.57 7.00 -92.71 -0.65 7.92 16 35 H 0.23 -0.62 8.06 -2.91 -0.02 -0.65 16 36 H 0.24 -0.77 8.06 -2.91 -0.02 -0.79 16 37 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.08 1.99 7.15 -2.39 -0.02 1.97 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 Total: -1.00 -73.27 344.80 0.77 -72.50 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.43 Total: 5.56 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.47 Total: 16.47 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -8.03 Total: -124.59 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.05 Total: -17.11 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.07 Total: 0.10 kcal Total: -73.27 0.77 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906799391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.275 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds