Wall clock time and date at job start Tue Mar 31 2020 13:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48493 * 109.47464 * 274.99895 * 3 2 1 5 5 H 1.48507 * 109.47369 * 35.00525 * 3 2 1 6 6 H 1.48506 * 109.47039 * 154.99873 * 3 2 1 7 7 C 1.37867 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 175.12240 * 7 2 1 9 9 C 1.50701 * 120.00145 * 355.11811 * 7 2 1 10 10 H 1.08999 * 109.49824 * 305.34134 * 9 7 2 11 11 C 1.53043 * 109.52315 * 185.25970 * 9 7 2 12 12 C 1.53047 * 109.53631 * 178.66817 * 11 9 7 13 13 C 1.52762 * 109.37984 * 61.24157 * 12 11 9 14 14 N 1.46928 * 109.00939 * 305.58146 * 13 12 11 15 15 C 1.34772 * 120.63550 * 233.58830 * 14 13 12 16 16 O 1.21589 * 120.00165 * 184.75377 * 15 14 13 17 17 N 1.34782 * 119.99917 * 4.75514 * 15 14 13 18 18 C 1.46498 * 119.99853 * 174.90088 * 17 15 14 19 19 C 1.50696 * 109.46897 * 179.97438 * 18 17 15 20 20 C 1.38349 * 119.98814 * 94.72210 * 19 18 17 21 21 N 1.32151 * 120.01777 * 179.75807 * 20 19 18 22 22 C 1.32235 * 119.98431 * 0.51275 * 21 20 19 23 23 Cl 1.73597 * 120.01271 * 179.71236 * 22 21 20 24 24 C 1.38525 * 119.96871 * 359.74404 * 22 21 20 25 25 N 1.32115 * 119.97836 * 359.97438 * 24 22 21 26 26 C 1.46932 * 118.73315 * 53.31477 * 14 13 12 27 27 H 0.97003 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46047 * 298.68493 * 11 9 7 29 29 H 1.08994 * 109.46455 * 58.64813 * 11 9 7 30 30 H 1.09004 * 109.49461 * 181.31159 * 12 11 9 31 31 H 1.08992 * 109.49684 * 301.37947 * 12 11 9 32 32 H 1.09005 * 109.50774 * 185.70909 * 13 12 11 33 33 H 1.08992 * 109.43816 * 65.42136 * 13 12 11 34 34 H 0.96996 * 119.99439 * 354.89081 * 17 15 14 35 35 H 1.08997 * 109.47684 * 59.99770 * 18 17 15 36 36 H 1.08997 * 109.46783 * 299.99566 * 18 17 15 37 37 H 1.07995 * 119.98656 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00562 * 180.02562 * 24 22 21 39 39 H 1.09003 * 109.58483 * 66.43044 * 26 14 13 40 40 H 1.09002 * 109.58507 * 186.85315 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3946 5 1 1.5035 2.6199 0.8032 6 1 3.5956 1.4120 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0801 9 6 1.2551 -2.4968 0.1099 10 1 0.6222 -2.4783 0.9972 11 6 2.2522 -3.6528 0.2178 12 6 1.4915 -4.9728 0.3633 13 6 0.6231 -5.1966 -0.8734 14 7 -0.2377 -4.0226 -1.0725 15 6 -1.5730 -4.1620 -1.1898 16 8 -2.2657 -3.1946 -1.4403 17 7 -2.1407 -5.3739 -1.0294 18 6 -3.5995 -5.5074 -1.0457 19 6 -3.9738 -6.9536 -0.8475 20 6 -4.2698 -7.4239 0.4195 21 7 -4.6028 -8.6909 0.5933 22 6 -4.6431 -9.5117 -0.4427 23 17 -5.0731 -11.1780 -0.2142 24 6 -4.3414 -9.0414 -1.7103 25 7 -4.0141 -7.7732 -1.8833 26 6 0.3845 -2.6930 -1.1351 27 1 -0.4850 0.8401 0.0004 28 1 2.8683 -3.6860 -0.6808 29 1 2.8893 -3.5028 1.0893 30 1 2.2023 -5.7932 0.4635 31 1 0.8568 -4.9313 1.2485 32 1 0.0048 -6.0825 -0.7286 33 1 1.2623 -5.3331 -1.7455 34 1 -1.5833 -6.1576 -0.9032 35 1 -3.9854 -5.1607 -2.0043 36 1 -4.0282 -4.9075 -0.2430 37 1 -4.2321 -6.7546 1.2661 38 1 -4.3746 -9.7112 -2.5569 39 1 1.0040 -2.6212 -2.0292 40 1 -0.3910 -1.9276 -1.1631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923705653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:47 Heat of formation + Delta-G solvation = 17.589271 kcal Electronic energy + Delta-G solvation = -24678.860508 eV Core-core repulsion = 20940.845801 eV Total energy + Delta-G solvation = -3738.014706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69870 -39.73862 -37.39501 -36.96557 -35.28847 -34.44020 -33.37946 -32.03411 -31.45803 -29.78543 -27.33120 -25.33177 -25.06956 -24.36882 -22.90590 -21.83118 -20.19369 -18.98697 -18.43498 -17.91924 -17.69433 -16.48574 -16.10142 -15.95673 -15.34612 -15.00374 -14.66732 -14.47476 -13.91249 -13.77628 -13.59858 -13.39082 -12.83035 -12.67311 -12.58485 -12.49050 -12.20986 -12.06816 -11.94128 -11.86919 -11.61703 -11.03251 -10.89729 -10.53468 -10.41880 -10.26323 -9.87940 -9.79405 -9.68614 -9.44377 -9.09720 -8.94814 -8.88093 -8.46314 -7.68472 -5.99759 -4.07737 0.01043 0.48587 1.14505 2.83264 3.28038 3.32488 3.39096 3.41655 3.52696 3.71365 3.77779 3.83153 4.32186 4.34403 4.45159 4.50571 4.90266 5.22886 5.30921 5.39294 5.47456 5.52448 5.60597 5.70114 5.95215 6.12957 6.29659 6.53796 6.56676 6.60645 6.63174 6.77947 6.96576 7.02376 7.09633 7.30428 7.44756 7.71550 7.90324 8.03420 8.40043 8.50141 8.96359 9.16618 9.57946 11.06098 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.002439 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.596405 B =11479.374710 C =11961.554746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.117 3.883 14 N -0.620 5.620 15 C 0.704 3.296 16 O -0.580 6.580 17 N -0.753 5.753 18 C 0.195 3.805 19 C 0.069 3.931 20 C 0.092 3.908 21 N -0.431 5.431 22 C 0.122 3.878 23 Cl -0.012 7.012 24 C 0.075 3.925 25 N -0.404 5.404 26 C 0.130 3.870 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.391 0.609 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.185 0.815 38 H 0.182 0.818 39 H 0.040 0.960 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -20.981 -1.308 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.356 5.356 15 C 0.406 3.594 16 O -0.457 6.457 17 N -0.414 5.414 18 C 0.069 3.931 19 C -0.072 4.072 20 C -0.068 4.068 21 N -0.147 5.147 22 C -0.046 4.046 23 Cl 0.016 6.984 24 C -0.086 4.086 25 N -0.120 5.120 26 C 0.010 3.990 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.227 0.773 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.202 0.798 38 H 0.199 0.801 39 H 0.059 0.941 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.748 -20.234 -1.470 22.093 hybrid contribution 0.657 0.122 0.174 0.691 sum -8.091 -20.112 -1.296 21.717 Atomic orbital electron populations 1.69921 1.05746 1.26834 1.49074 1.25052 0.94866 0.99251 0.94812 0.86594 0.79891 0.83613 0.77991 1.20724 1.21177 1.19911 1.21061 0.93156 0.90141 1.51647 0.92386 1.19004 0.92621 0.92080 0.94265 0.95097 1.21621 0.98585 0.94047 1.00520 1.21879 0.98668 0.99215 0.97456 1.21402 0.93324 0.87587 0.98458 1.47796 1.03446 1.09590 1.74803 1.15845 0.82622 0.82506 0.78426 1.90937 1.61507 1.37830 1.55436 1.45196 1.05656 1.09197 1.81315 1.19803 0.81732 0.86946 1.04582 1.22541 0.96755 0.97742 0.90131 1.23796 0.93802 0.91047 0.98171 1.67892 1.10318 1.03769 1.32738 1.22969 0.99798 0.89935 0.91858 1.98438 1.90809 1.11536 1.97612 1.23700 0.95782 0.93024 0.96105 1.68499 1.08239 1.02370 1.32859 1.22237 0.98176 0.80009 0.98580 0.92680 0.93213 0.92972 0.92325 0.92175 0.92435 0.92045 0.77278 0.89219 0.89190 0.79804 0.80146 0.94122 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 11.61 55.43 0.64 -24.75 16 2 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.94 8.49 -34.44 -0.29 -14.23 16 8 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 9 C 0.04 0.96 2.19 -91.65 -0.20 0.76 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.13 5.11 -26.68 -0.14 -2.27 16 12 C -0.13 -2.08 6.07 -26.83 -0.16 -2.24 16 13 C 0.12 1.75 6.40 -3.93 -0.03 1.73 16 14 N -0.62 -12.13 2.98 -178.76 -0.53 -12.67 16 15 C 0.70 13.79 8.30 -86.92 -0.72 13.07 16 16 O -0.58 -13.94 15.79 5.29 0.08 -13.86 16 17 N -0.75 -10.65 5.46 -66.42 -0.36 -11.01 16 18 C 0.20 2.32 6.01 -5.20 -0.03 2.29 16 19 C 0.07 0.69 6.15 -82.42 -0.51 0.18 16 20 C 0.09 0.83 10.86 -17.37 -0.19 0.64 16 21 N -0.43 -4.33 10.49 -10.17 -0.11 -4.44 16 22 C 0.12 1.09 7.29 -17.27 -0.13 0.96 16 23 Cl -0.01 -0.09 29.13 -51.86 -1.51 -1.60 16 24 C 0.08 0.62 11.01 -17.32 -0.19 0.43 16 25 N -0.40 -4.12 10.42 -9.26 -0.10 -4.22 16 26 C 0.13 3.11 5.46 -3.71 -0.02 3.09 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 4.73 5.92 -40.82 -0.24 4.49 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.12 3.34 5.38 -51.93 -0.28 3.06 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -32.29 347.67 -9.36 -41.65 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.00 Total: 3.54 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.70 Total: 6.05 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.45 Total: -57.09 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.51 Total: -1.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.29 -9.36 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923705653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.237 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds