Wall clock time and date at job start Tue Mar 31 2020 13:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48493 * 109.47464 * 274.99895 * 3 2 1 5 5 H 1.48507 * 109.47369 * 35.00525 * 3 2 1 6 6 H 1.48506 * 109.47039 * 154.99873 * 3 2 1 7 7 C 1.37867 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 175.12240 * 7 2 1 9 9 C 1.50701 * 120.00145 * 355.11811 * 7 2 1 10 10 H 1.08999 * 109.49824 * 305.34134 * 9 7 2 11 11 C 1.53043 * 109.52315 * 185.25970 * 9 7 2 12 12 C 1.53047 * 109.53631 * 178.66817 * 11 9 7 13 13 C 1.52762 * 109.37984 * 61.24157 * 12 11 9 14 14 N 1.46928 * 109.00939 * 305.58146 * 13 12 11 15 15 C 1.34772 * 120.63550 * 233.58830 * 14 13 12 16 16 O 1.21589 * 120.00165 * 184.75377 * 15 14 13 17 17 N 1.34782 * 119.99917 * 4.75514 * 15 14 13 18 18 C 1.46498 * 119.99853 * 174.90088 * 17 15 14 19 19 C 1.50696 * 109.46897 * 179.97438 * 18 17 15 20 20 C 1.38349 * 119.98814 * 94.72210 * 19 18 17 21 21 N 1.32151 * 120.01777 * 179.75807 * 20 19 18 22 22 C 1.32235 * 119.98431 * 0.51275 * 21 20 19 23 23 Cl 1.73597 * 120.01271 * 179.71236 * 22 21 20 24 24 C 1.38525 * 119.96871 * 359.74404 * 22 21 20 25 25 N 1.32115 * 119.97836 * 359.97438 * 24 22 21 26 26 C 1.46932 * 118.73315 * 53.31477 * 14 13 12 27 27 H 0.97003 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46047 * 298.68493 * 11 9 7 29 29 H 1.08994 * 109.46455 * 58.64813 * 11 9 7 30 30 H 1.09004 * 109.49461 * 181.31159 * 12 11 9 31 31 H 1.08992 * 109.49684 * 301.37947 * 12 11 9 32 32 H 1.09005 * 109.50774 * 185.70909 * 13 12 11 33 33 H 1.08992 * 109.43816 * 65.42136 * 13 12 11 34 34 H 0.96996 * 119.99439 * 354.89081 * 17 15 14 35 35 H 1.08997 * 109.47684 * 59.99770 * 18 17 15 36 36 H 1.08997 * 109.46783 * 299.99566 * 18 17 15 37 37 H 1.07995 * 119.98656 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00562 * 180.02562 * 24 22 21 39 39 H 1.09003 * 109.58483 * 66.43044 * 26 14 13 40 40 H 1.09002 * 109.58507 * 186.85315 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3946 5 1 1.5035 2.6199 0.8032 6 1 3.5956 1.4120 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0801 9 6 1.2551 -2.4968 0.1099 10 1 0.6222 -2.4783 0.9972 11 6 2.2522 -3.6528 0.2178 12 6 1.4915 -4.9728 0.3633 13 6 0.6231 -5.1966 -0.8734 14 7 -0.2377 -4.0226 -1.0725 15 6 -1.5730 -4.1620 -1.1898 16 8 -2.2657 -3.1946 -1.4403 17 7 -2.1407 -5.3739 -1.0294 18 6 -3.5995 -5.5074 -1.0457 19 6 -3.9738 -6.9536 -0.8475 20 6 -4.2698 -7.4239 0.4195 21 7 -4.6028 -8.6909 0.5933 22 6 -4.6431 -9.5117 -0.4427 23 17 -5.0731 -11.1780 -0.2142 24 6 -4.3414 -9.0414 -1.7103 25 7 -4.0141 -7.7732 -1.8833 26 6 0.3845 -2.6930 -1.1351 27 1 -0.4850 0.8401 0.0004 28 1 2.8683 -3.6860 -0.6808 29 1 2.8893 -3.5028 1.0893 30 1 2.2023 -5.7932 0.4635 31 1 0.8568 -4.9313 1.2485 32 1 0.0048 -6.0825 -0.7286 33 1 1.2623 -5.3331 -1.7455 34 1 -1.5833 -6.1576 -0.9032 35 1 -3.9854 -5.1607 -2.0043 36 1 -4.0282 -4.9075 -0.2430 37 1 -4.2321 -6.7546 1.2661 38 1 -4.3746 -9.7112 -2.5569 39 1 1.0040 -2.6212 -2.0292 40 1 -0.3910 -1.9276 -1.1631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923705653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:47 Heat of formation + Delta-G solvation = -4.897383 kcal Electronic energy + Delta-G solvation = -24679.835602 eV Core-core repulsion = 20940.845801 eV Total energy + Delta-G solvation = -3738.989801 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43369 -41.23155 -38.57771 -37.98242 -36.38249 -35.44947 -35.11246 -33.53827 -32.56778 -31.48183 -28.38523 -26.94221 -26.06198 -25.77338 -23.87640 -23.39113 -21.75281 -20.48308 -19.27098 -19.16135 -18.49856 -18.24638 -17.47465 -16.86563 -16.59353 -16.38174 -16.23440 -15.50911 -15.20234 -15.15532 -14.98935 -14.62027 -14.33294 -14.26808 -13.67472 -13.61479 -13.48646 -13.26524 -12.92369 -12.89455 -12.64477 -12.53745 -12.31820 -12.31002 -12.20175 -11.83487 -11.61188 -11.25167 -10.91609 -10.84897 -10.52186 -10.42145 -10.32780 -10.21783 -9.27231 -8.08748 -6.24302 -0.70324 -0.20894 0.49483 1.42320 1.43452 1.54331 1.70663 2.23383 2.36910 2.44655 2.73955 3.02706 3.07449 3.18747 3.21835 3.55016 3.79580 4.02740 4.17427 4.28763 4.34058 4.50634 4.59192 4.61527 4.74462 4.82777 4.86687 4.95031 5.12717 5.26956 5.28194 5.32617 5.40704 5.59487 5.63967 5.85478 5.90447 5.97997 6.13800 6.38454 6.39673 6.89105 7.07820 7.45381 7.64610 8.95466 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.002439 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.596405 B =11479.374710 C =11961.554746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.039 3.961 10 H -0.009 1.009 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.112 3.888 14 N -0.625 5.625 15 C 0.700 3.300 16 O -0.634 6.634 17 N -0.730 5.730 18 C 0.197 3.803 19 C 0.066 3.934 20 C 0.097 3.903 21 N -0.449 5.449 22 C 0.121 3.879 23 Cl 0.000 7.000 24 C 0.082 3.918 25 N -0.422 5.422 26 C 0.145 3.855 27 H 0.259 0.741 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.203 0.797 38 H 0.211 0.789 39 H 0.034 0.966 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 -23.674 -1.265 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.020 3.980 10 H 0.009 0.991 11 C -0.143 4.143 12 C -0.163 4.163 13 C -0.011 4.011 14 N -0.361 5.361 15 C 0.401 3.599 16 O -0.515 6.515 17 N -0.390 5.390 18 C 0.072 3.928 19 C -0.074 4.074 20 C -0.062 4.062 21 N -0.165 5.165 22 C -0.047 4.047 23 Cl 0.028 6.972 24 C -0.080 4.080 25 N -0.137 5.137 26 C 0.022 3.978 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.243 0.757 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.219 0.781 38 H 0.227 0.773 39 H 0.053 0.947 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.784 -23.004 -1.411 24.326 hybrid contribution 0.319 0.837 0.152 0.909 sum -7.465 -22.167 -1.259 23.424 Atomic orbital electron populations 1.70109 1.07369 1.27231 1.50501 1.25876 0.95546 1.02841 0.94674 0.85584 0.78929 0.79392 0.77999 1.20333 1.21278 1.18683 1.21506 0.93518 0.91572 1.50754 0.92055 1.18923 0.93078 0.93510 0.92524 0.99080 1.21511 0.97696 0.94266 1.00834 1.21830 0.99032 0.98222 0.97255 1.21737 0.93509 0.86790 0.99020 1.47669 1.04124 1.09487 1.74837 1.16035 0.82414 0.83311 0.78132 1.90900 1.62745 1.40097 1.57720 1.44924 1.06826 1.07663 1.79611 1.19806 0.80072 0.88773 1.04147 1.22140 0.98036 0.96529 0.90686 1.23990 0.92963 0.91036 0.98255 1.67945 1.10985 1.04183 1.33414 1.23193 0.99153 0.90349 0.92015 1.98445 1.90608 1.10548 1.97594 1.24113 0.94587 0.92513 0.96772 1.68458 1.08827 1.03265 1.33168 1.21615 0.96627 0.81466 0.98045 0.93155 0.92541 0.92964 0.87947 0.92893 0.88709 0.90394 0.75670 0.90549 0.88716 0.78051 0.77277 0.94748 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.29 11.61 21.44 0.25 -55.05 16 2 C 0.01 0.58 5.36 84.65 0.45 1.03 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.53 -29.19 8.49 25.60 0.22 -28.97 16 8 H 0.06 3.22 7.75 -2.91 -0.02 3.20 16 9 C 0.04 1.94 2.19 -11.46 -0.03 1.91 16 10 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 11 C -0.11 -3.95 5.11 30.62 0.16 -3.80 16 12 C -0.13 -3.51 6.07 30.53 0.19 -3.32 16 13 C 0.11 3.04 6.40 86.22 0.55 3.59 16 14 N -0.63 -24.44 2.98 -837.73 -2.50 -26.94 16 15 C 0.70 27.72 8.30 179.05 1.49 29.21 16 16 O -0.63 -31.89 15.79 -4.00 -0.06 -31.95 16 17 N -0.73 -19.90 5.46 -482.31 -2.63 -22.54 16 18 C 0.20 4.60 6.01 85.63 0.51 5.11 16 19 C 0.07 1.22 6.15 42.54 0.26 1.48 16 20 C 0.10 1.58 10.86 84.67 0.92 2.50 16 21 N -0.45 -8.10 10.49 -186.10 -1.95 -10.05 16 22 C 0.12 1.87 7.29 84.70 0.62 2.49 16 23 Cl 0.00 0.00 29.13 -2.72 -0.08 -0.08 16 24 C 0.08 1.13 11.01 84.72 0.93 2.07 16 25 N -0.42 -7.78 10.42 -183.20 -1.91 -9.69 16 26 C 0.15 7.18 5.46 86.36 0.47 7.65 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.88 5.57 -2.38 -0.01 1.87 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.40 8.74 5.92 -92.71 -0.55 8.19 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.14 8.05 -2.39 -0.02 2.12 16 37 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 4.28 5.38 -2.39 -0.01 4.27 16 Total: -1.00 -74.39 347.67 0.42 -73.97 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.53 Total: 15.25 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 6.74 Total: 20.94 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -8.74 Total: -124.27 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.06 Total: -31.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -74.39 0.42 -73.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923705653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.074 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds