Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00004 * 3 2 1 5 5 H 1.48495 * 109.47271 * 30.00165 * 3 2 1 6 6 H 1.48505 * 109.47147 * 150.00270 * 3 2 1 7 7 C 1.37880 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00109 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.52122 * 60.08072 * 9 7 2 11 11 C 1.53040 * 109.49547 * 180.16272 * 9 7 2 12 12 C 1.53347 * 109.60549 * 181.32332 * 11 9 7 13 13 C 1.53192 * 109.15168 * 298.71574 * 12 11 9 14 14 N 1.46917 * 108.89600 * 54.57584 * 13 12 11 15 15 C 1.34776 * 120.63407 * 126.29905 * 14 13 12 16 16 O 1.21588 * 120.00211 * 174.95997 * 15 14 13 17 17 N 1.34772 * 119.99868 * 354.96175 * 15 14 13 18 18 C 1.46502 * 120.00424 * 185.06863 * 17 15 14 19 19 C 1.50692 * 109.47120 * 180.02562 * 18 17 15 20 20 C 1.38348 * 119.98435 * 94.73032 * 19 18 17 21 21 N 1.32153 * 120.01815 * 179.75034 * 20 19 18 22 22 C 1.32237 * 119.98207 * 0.51859 * 21 20 19 23 23 Cl 1.73605 * 120.01588 * 179.75385 * 22 21 20 24 24 C 1.38520 * 119.96977 * 359.73245 * 22 21 20 25 25 N 1.32114 * 119.98048 * 0.02562 * 24 22 21 26 26 C 1.46925 * 118.73866 * 306.32402 * 14 13 12 27 27 H 0.96991 * 120.00292 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46141 * 301.33835 * 11 9 7 29 29 H 1.08998 * 109.46062 * 61.30837 * 11 9 7 30 30 H 1.09001 * 109.68651 * 178.74311 * 12 11 9 31 31 H 1.09002 * 109.47204 * 58.55204 * 12 11 9 32 32 H 1.09000 * 109.58295 * 294.71486 * 13 12 11 33 33 H 1.09000 * 109.58931 * 174.43824 * 13 12 11 34 34 H 0.97004 * 120.00168 * 5.07331 * 17 15 14 35 35 H 1.08998 * 109.47065 * 300.00332 * 18 17 15 36 36 H 1.09000 * 109.46606 * 59.99697 * 18 17 15 37 37 H 1.08004 * 119.99178 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00943 * 179.97438 * 24 22 21 39 39 H 1.08995 * 109.59035 * 173.39564 * 26 14 13 40 40 H 1.09003 * 109.58713 * 293.82288 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8762 -0.6818 0.8892 11 6 4.0224 -2.6366 -0.0057 12 6 5.5555 -2.6398 0.0270 13 6 6.0864 -1.9319 -1.2235 14 7 5.4857 -0.5935 -1.3038 15 6 6.2621 0.5018 -1.4223 16 8 5.7523 1.5943 -1.5798 17 7 7.6037 0.3860 -1.3662 18 6 8.4439 1.5860 -1.3833 19 6 9.8946 1.1844 -1.3120 20 6 10.6319 1.0468 -2.4745 21 7 11.9055 0.6995 -2.4125 22 6 12.4724 0.4736 -1.2394 23 17 14.1437 0.0111 -1.1572 24 6 11.7323 0.6065 -0.0761 25 7 10.4605 0.9584 -0.1393 26 6 4.0224 -0.4716 -1.2518 27 1 -0.4850 0.8399 0.0004 28 1 3.6401 -3.1600 0.8706 29 1 3.6782 -3.1409 -0.9087 30 1 5.9203 -3.6667 0.0463 31 1 5.9010 -2.1138 0.9171 32 1 5.8183 -2.5065 -2.1101 33 1 7.1709 -1.8424 -1.1602 34 1 8.0130 -0.4919 -1.3146 35 1 8.2658 2.1411 -2.3043 36 1 8.1978 2.2140 -0.5271 37 1 10.1675 1.2267 -3.4329 38 1 12.1946 0.4218 0.8823 39 1 3.7448 0.5813 -1.2045 40 1 3.5860 -0.9272 -2.1407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923705654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = 25.831444 kcal Electronic energy + Delta-G solvation = -24867.217578 eV Core-core repulsion = 21129.560280 eV Total energy + Delta-G solvation = -3737.657299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80599 -40.06573 -37.51070 -37.21634 -35.47013 -34.60519 -33.45856 -32.16651 -31.66156 -30.46274 -27.50270 -25.43545 -25.23857 -24.57100 -23.02146 -22.08313 -20.27589 -19.16254 -18.54553 -18.16870 -17.86277 -16.80946 -16.43832 -16.14108 -15.54116 -15.27540 -14.90394 -14.48900 -14.06529 -13.92764 -13.82011 -13.51107 -13.16820 -12.87231 -12.82266 -12.64692 -12.34497 -12.28877 -12.19183 -11.98014 -11.71376 -11.34553 -11.06605 -10.64032 -10.42303 -10.12139 -9.98647 -9.79584 -9.75172 -9.66066 -9.25126 -9.16313 -9.08748 -8.58397 -8.02062 -6.09549 -4.11299 -0.09537 0.38791 1.06212 2.65635 3.10141 3.37968 3.40342 3.47549 3.48982 3.59660 3.61666 3.72361 4.07458 4.20787 4.39375 4.43990 4.80250 5.03839 5.22679 5.23724 5.28488 5.36937 5.43448 5.56361 5.75308 5.94771 6.07347 6.12811 6.36272 6.38134 6.45131 6.53100 6.57194 6.70823 6.83162 6.99660 7.08365 7.24313 7.44769 7.73113 8.15767 8.48347 8.83022 8.93430 9.51970 11.02330 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.002739 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.586226 B =10219.260687 C =10841.673346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.099 4.099 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.622 5.622 15 C 0.706 3.294 16 O -0.588 6.588 17 N -0.749 5.749 18 C 0.194 3.806 19 C 0.067 3.933 20 C 0.092 3.908 21 N -0.431 5.431 22 C 0.123 3.877 23 Cl -0.010 7.010 24 C 0.077 3.923 25 N -0.403 5.403 26 C 0.119 3.881 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.394 0.606 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.080 0.920 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.993 -1.652 -3.087 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.016 4.016 10 H 0.048 0.952 11 C -0.137 4.137 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.358 5.358 15 C 0.407 3.593 16 O -0.466 6.466 17 N -0.409 5.409 18 C 0.068 3.932 19 C -0.074 4.074 20 C -0.069 4.069 21 N -0.147 5.147 22 C -0.044 4.044 23 Cl 0.018 6.982 24 C -0.085 4.085 25 N -0.118 5.118 26 C -0.002 4.002 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.201 0.799 38 H 0.200 0.800 39 H 0.098 0.902 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.566 -0.761 -3.188 26.767 hybrid contribution 0.937 0.435 -0.020 1.033 sum 27.503 -0.326 -3.208 27.692 Atomic orbital electron populations 1.69888 1.06290 1.27169 1.49993 1.25050 0.94766 0.99145 0.94042 0.86966 0.79575 0.83344 0.79053 1.19777 1.22394 1.18901 1.20946 0.88159 0.94619 1.51710 0.90467 1.19509 0.96799 0.92180 0.93104 0.95160 1.21478 0.91767 0.98898 1.01546 1.22048 0.98796 0.99376 0.97297 1.21551 0.95964 0.84049 0.99165 1.47664 1.08029 1.04288 1.75816 1.15834 0.80563 0.84800 0.78093 1.90923 1.72872 1.25566 1.57241 1.45146 1.04941 1.08719 1.82132 1.19834 0.80882 0.87838 1.04599 1.22485 0.98413 0.96941 0.89568 1.23765 0.88443 0.94210 1.00437 1.67898 1.11371 1.08768 1.26683 1.22986 0.90092 0.99545 0.91797 1.98443 1.12083 1.89630 1.98013 1.23725 0.89856 0.96061 0.98822 1.68506 1.09456 1.06557 1.27308 1.22539 0.74262 1.02501 1.00854 0.92508 0.92212 0.92475 0.91686 0.91984 0.91431 0.92023 0.76960 0.89004 0.89193 0.79877 0.80030 0.90234 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 3 Si 0.88 23.25 24.32 -169.99 -4.13 19.11 16 4 H -0.27 -7.24 6.92 56.52 0.39 -6.84 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.26 -6.99 6.53 56.52 0.37 -6.62 16 7 C -0.52 -14.21 9.15 -34.44 -0.31 -14.52 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 9 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 10 H 0.03 0.75 7.21 -51.93 -0.37 0.37 16 11 C -0.10 -1.82 5.11 -26.53 -0.14 -1.96 16 12 C -0.14 -1.95 6.11 -26.45 -0.16 -2.11 16 13 C 0.12 1.57 6.42 -3.72 -0.02 1.55 16 14 N -0.62 -11.28 2.97 -178.51 -0.53 -11.81 16 15 C 0.71 12.80 8.30 -86.92 -0.72 12.07 16 16 O -0.59 -13.16 15.79 5.29 0.08 -13.07 16 17 N -0.75 -9.64 5.46 -66.42 -0.36 -10.01 16 18 C 0.19 2.09 6.01 -5.20 -0.03 2.06 16 19 C 0.07 0.60 6.15 -82.42 -0.51 0.10 16 20 C 0.09 0.72 10.86 -17.37 -0.19 0.54 16 21 N -0.43 -3.93 10.49 -10.17 -0.11 -4.04 16 22 C 0.12 1.01 7.29 -17.27 -0.13 0.89 16 23 Cl -0.01 -0.07 29.13 -51.86 -1.51 -1.58 16 24 C 0.08 0.59 11.01 -17.33 -0.19 0.40 16 25 N -0.40 -3.88 10.42 -9.26 -0.10 -3.98 16 26 C 0.12 2.65 5.09 -3.71 -0.02 2.63 16 27 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.65 5.56 -51.93 -0.29 0.36 16 34 H 0.39 4.21 5.92 -40.82 -0.24 3.97 16 35 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.08 2.00 2.35 -51.93 -0.12 1.88 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -34.41 340.37 -8.29 -42.70 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.85 Total: 0.57 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.69 Total: 3.57 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.32 Total: -56.42 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.13 Total: 19.11 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.41 -8.29 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923705654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.528 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds