Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00004 * 3 2 1 5 5 H 1.48495 * 109.47271 * 30.00165 * 3 2 1 6 6 H 1.48505 * 109.47147 * 150.00270 * 3 2 1 7 7 C 1.37880 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00109 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.52122 * 60.08072 * 9 7 2 11 11 C 1.53040 * 109.49547 * 180.16272 * 9 7 2 12 12 C 1.53347 * 109.60549 * 181.32332 * 11 9 7 13 13 C 1.53192 * 109.15168 * 298.71574 * 12 11 9 14 14 N 1.46917 * 108.89600 * 54.57584 * 13 12 11 15 15 C 1.34776 * 120.63407 * 126.29905 * 14 13 12 16 16 O 1.21588 * 120.00211 * 174.95997 * 15 14 13 17 17 N 1.34772 * 119.99868 * 354.96175 * 15 14 13 18 18 C 1.46502 * 120.00424 * 185.06863 * 17 15 14 19 19 C 1.50692 * 109.47120 * 180.02562 * 18 17 15 20 20 C 1.38348 * 119.98435 * 94.73032 * 19 18 17 21 21 N 1.32153 * 120.01815 * 179.75034 * 20 19 18 22 22 C 1.32237 * 119.98207 * 0.51859 * 21 20 19 23 23 Cl 1.73605 * 120.01588 * 179.75385 * 22 21 20 24 24 C 1.38520 * 119.96977 * 359.73245 * 22 21 20 25 25 N 1.32114 * 119.98048 * 0.02562 * 24 22 21 26 26 C 1.46925 * 118.73866 * 306.32402 * 14 13 12 27 27 H 0.96991 * 120.00292 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46141 * 301.33835 * 11 9 7 29 29 H 1.08998 * 109.46062 * 61.30837 * 11 9 7 30 30 H 1.09001 * 109.68651 * 178.74311 * 12 11 9 31 31 H 1.09002 * 109.47204 * 58.55204 * 12 11 9 32 32 H 1.09000 * 109.58295 * 294.71486 * 13 12 11 33 33 H 1.09000 * 109.58931 * 174.43824 * 13 12 11 34 34 H 0.97004 * 120.00168 * 5.07331 * 17 15 14 35 35 H 1.08998 * 109.47065 * 300.00332 * 18 17 15 36 36 H 1.09000 * 109.46606 * 59.99697 * 18 17 15 37 37 H 1.08004 * 119.99178 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00943 * 179.97438 * 24 22 21 39 39 H 1.08995 * 109.59035 * 173.39564 * 26 14 13 40 40 H 1.09003 * 109.58713 * 293.82288 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8762 -0.6818 0.8892 11 6 4.0224 -2.6366 -0.0057 12 6 5.5555 -2.6398 0.0270 13 6 6.0864 -1.9319 -1.2235 14 7 5.4857 -0.5935 -1.3038 15 6 6.2621 0.5018 -1.4223 16 8 5.7523 1.5943 -1.5798 17 7 7.6037 0.3860 -1.3662 18 6 8.4439 1.5860 -1.3833 19 6 9.8946 1.1844 -1.3120 20 6 10.6319 1.0468 -2.4745 21 7 11.9055 0.6995 -2.4125 22 6 12.4724 0.4736 -1.2394 23 17 14.1437 0.0111 -1.1572 24 6 11.7323 0.6065 -0.0761 25 7 10.4605 0.9584 -0.1393 26 6 4.0224 -0.4716 -1.2518 27 1 -0.4850 0.8399 0.0004 28 1 3.6401 -3.1600 0.8706 29 1 3.6782 -3.1409 -0.9087 30 1 5.9203 -3.6667 0.0463 31 1 5.9010 -2.1138 0.9171 32 1 5.8183 -2.5065 -2.1101 33 1 7.1709 -1.8424 -1.1602 34 1 8.0130 -0.4919 -1.3146 35 1 8.2658 2.1411 -2.3043 36 1 8.1978 2.2140 -0.5271 37 1 10.1675 1.2267 -3.4329 38 1 12.1946 0.4218 0.8823 39 1 3.7448 0.5813 -1.2045 40 1 3.5860 -0.9272 -2.1407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923705654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = 0.053413 kcal Electronic energy + Delta-G solvation = -24868.335398 eV Core-core repulsion = 21129.560280 eV Total energy + Delta-G solvation = -3738.775118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45796 -41.42034 -38.75517 -38.00278 -36.47072 -35.49721 -35.16408 -33.71456 -32.67671 -32.06791 -28.45206 -26.98819 -26.12734 -25.88812 -23.87132 -23.57581 -21.74748 -20.59283 -19.44212 -19.17767 -18.87754 -18.48638 -17.59113 -17.06691 -16.63440 -16.50826 -16.24574 -15.56426 -15.38300 -15.32430 -15.04573 -14.88940 -14.72489 -14.31809 -13.93050 -13.71540 -13.55204 -13.31871 -13.11756 -12.93680 -12.89612 -12.55232 -12.33332 -12.30793 -12.12433 -11.87243 -11.58548 -11.43173 -11.06250 -10.99892 -10.78200 -10.45517 -10.35248 -10.30753 -9.45232 -8.37105 -6.38956 -0.72317 -0.22199 0.48509 1.26346 1.32570 1.43842 1.55856 2.08156 2.23307 2.33005 2.71211 2.93322 3.01324 3.03876 3.16704 3.52598 3.77497 3.95026 4.05563 4.13600 4.32402 4.44630 4.47876 4.51341 4.55932 4.62593 4.71634 4.86779 4.93328 4.98869 5.11954 5.20464 5.28883 5.40202 5.53752 5.62478 5.69987 5.84228 5.92991 6.28458 6.38369 6.69774 6.91610 7.26796 7.46996 8.78867 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.002739 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.586226 B =10219.260687 C =10841.673346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.004 3.996 10 H 0.013 0.987 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.111 3.889 14 N -0.626 5.626 15 C 0.701 3.299 16 O -0.636 6.636 17 N -0.727 5.727 18 C 0.196 3.804 19 C 0.064 3.936 20 C 0.100 3.900 21 N -0.449 5.449 22 C 0.121 3.879 23 Cl -0.001 7.001 24 C 0.080 3.920 25 N -0.424 5.424 26 C 0.127 3.873 27 H 0.267 0.733 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.408 0.592 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.208 0.792 38 H 0.208 0.792 39 H 0.049 0.951 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.444 -2.775 -3.493 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.549 4.549 8 H 0.069 0.931 9 C -0.016 4.016 10 H 0.031 0.969 11 C -0.135 4.135 12 C -0.165 4.165 13 C -0.011 4.011 14 N -0.362 5.362 15 C 0.403 3.597 16 O -0.518 6.518 17 N -0.387 5.387 18 C 0.071 3.929 19 C -0.076 4.076 20 C -0.060 4.060 21 N -0.165 5.165 22 C -0.046 4.046 23 Cl 0.027 6.973 24 C -0.081 4.081 25 N -0.139 5.139 26 C 0.004 3.996 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.246 0.754 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.224 0.776 38 H 0.224 0.776 39 H 0.067 0.933 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 30.089 -1.928 -3.589 30.363 hybrid contribution -0.041 0.704 0.123 0.716 sum 30.048 -1.223 -3.466 30.272 Atomic orbital electron populations 1.69984 1.07532 1.27865 1.52410 1.25634 0.95194 1.01717 0.94527 0.86037 0.78094 0.80606 0.78328 1.20576 1.22308 1.19404 1.21312 0.90873 0.93190 1.49526 0.93090 1.19437 0.93804 0.95553 0.92829 0.96909 1.21414 0.95228 0.95261 1.01598 1.21995 0.95103 1.01990 0.97438 1.21905 0.97892 0.81622 0.99635 1.47547 1.06423 1.06345 1.75909 1.16004 0.81952 0.83935 0.77853 1.90888 1.74145 1.27451 1.59312 1.44916 1.03106 1.10237 1.80420 1.19863 0.81672 0.86884 1.04521 1.22167 0.97376 0.98034 0.90049 1.24042 0.87952 0.93030 1.00933 1.67959 1.11857 1.09486 1.27229 1.23172 0.90531 0.99024 0.91877 1.98449 1.11365 1.89458 1.97991 1.24077 0.89113 0.95198 0.99733 1.68462 1.10518 1.07154 1.27801 1.21997 0.77384 1.00193 1.00008 0.92384 0.92677 0.92064 0.87492 0.92540 0.89505 0.88238 0.75353 0.87815 0.90903 0.77577 0.77550 0.93312 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.03 1.66 5.45 84.66 0.46 2.12 16 3 Si 0.94 50.04 24.32 68.60 1.67 51.71 16 4 H -0.28 -15.05 6.92 99.48 0.69 -14.36 16 5 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.27 -14.32 6.53 99.48 0.65 -13.67 16 7 C -0.51 -28.75 9.15 25.60 0.23 -28.51 16 8 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 9 C 0.00 0.16 1.84 -11.46 -0.02 0.14 16 10 H 0.01 0.63 7.21 -2.39 -0.02 0.62 16 11 C -0.10 -3.41 5.11 30.72 0.16 -3.25 16 12 C -0.13 -3.14 6.11 30.78 0.19 -2.95 16 13 C 0.11 2.55 6.42 86.36 0.55 3.11 16 14 N -0.63 -21.53 2.97 -836.94 -2.49 -24.02 16 15 C 0.70 24.37 8.30 179.06 1.49 25.86 16 16 O -0.64 -28.36 15.79 -3.99 -0.06 -28.42 16 17 N -0.73 -16.87 5.46 -482.31 -2.63 -19.51 16 18 C 0.20 3.86 6.01 85.63 0.51 4.37 16 19 C 0.06 1.00 6.15 42.53 0.26 1.27 16 20 C 0.10 1.30 10.86 84.67 0.92 2.22 16 21 N -0.45 -7.02 10.49 -186.09 -1.95 -8.97 16 22 C 0.12 1.69 7.29 84.70 0.62 2.30 16 23 Cl 0.00 -0.01 29.13 -2.72 -0.08 -0.09 16 24 C 0.08 1.01 11.01 84.72 0.93 1.95 16 25 N -0.42 -7.15 10.42 -183.21 -1.91 -9.06 16 26 C 0.13 5.61 5.09 86.36 0.44 6.05 16 27 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 1.56 5.56 -2.39 -0.01 1.54 16 34 H 0.41 7.15 5.92 -92.70 -0.55 6.60 16 35 H 0.10 1.82 8.05 -2.39 -0.02 1.81 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.05 2.48 2.35 -2.39 -0.01 2.47 16 40 H 0.06 2.79 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -77.62 340.37 0.05 -77.57 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.46 Total: 4.76 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.74 Total: 14.67 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -8.68 Total: -120.20 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.06 Total: -28.42 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 1.67 Total: 51.71 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.08 Total: -0.09 kcal Total: -77.62 0.05 -77.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923705654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.620 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds