Wall clock time and date at job start Tue Mar 31 2020 13:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48499 * 109.47340 * 240.00104 * 3 2 1 5 5 H 1.48500 * 109.47473 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46899 * 120.00344 * 3 2 1 7 7 C 1.37878 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53047 * 109.45846 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31368 * 178.62526 * 10 9 7 12 12 N 1.46931 * 108.88826 * 54.56747 * 11 10 9 13 13 C 1.34775 * 120.62344 * 126.46316 * 12 11 10 14 14 O 1.21578 * 120.00454 * 354.76255 * 13 12 11 15 15 N 1.34780 * 119.99446 * 174.77186 * 13 12 11 16 16 C 1.46496 * 119.99968 * 184.98091 * 15 13 12 17 17 C 1.50707 * 109.47260 * 179.97438 * 16 15 13 18 18 C 1.38339 * 119.98373 * 94.72140 * 17 16 15 19 19 N 1.32155 * 120.01901 * 179.75659 * 18 17 16 20 20 C 1.32240 * 119.97743 * 0.51898 * 19 18 17 21 21 Cl 1.73600 * 120.01454 * 179.75661 * 20 19 18 22 22 C 1.38523 * 119.97048 * 359.73492 * 20 19 18 23 23 N 1.32120 * 119.98066 * 0.02562 * 22 20 19 24 24 C 1.46952 * 118.71690 * 306.63710 * 12 11 10 25 25 C 1.53045 * 109.45145 * 59.94358 * 9 7 2 26 26 H 0.97008 * 119.99550 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46161 * 299.97374 * 9 7 2 28 28 H 1.09000 * 109.49209 * 58.67914 * 10 9 7 29 29 H 1.08993 * 109.52764 * 298.59743 * 10 9 7 30 30 H 1.08996 * 109.58313 * 174.42242 * 11 10 9 31 31 H 1.08994 * 109.58819 * 294.71120 * 11 10 9 32 32 H 0.97003 * 119.99848 * 4.97554 * 15 13 12 33 33 H 1.09002 * 109.47007 * 299.99501 * 16 15 13 34 34 H 1.08999 * 109.47801 * 59.99484 * 16 15 13 35 35 H 1.08001 * 119.99332 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.00980 * 179.97438 * 22 20 19 37 37 H 1.09000 * 109.46861 * 293.57854 * 24 12 11 38 38 H 1.08998 * 109.71491 * 173.28520 * 24 12 11 39 39 H 1.08996 * 109.49338 * 301.32855 * 25 9 7 40 40 H 1.08996 * 109.49491 * 61.42395 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6623 -0.0018 11 6 1.4765 -4.9867 0.0329 12 7 0.5193 -5.0102 -1.0816 13 6 0.5068 -6.0372 -1.9543 14 8 1.3525 -6.9076 -1.8811 15 7 -0.4432 -6.0992 -2.9084 16 6 -0.5237 -7.2686 -3.7871 17 6 -1.6631 -7.0905 -4.7573 18 6 -1.4245 -6.5668 -6.0153 19 7 -2.4223 -6.4148 -6.8684 20 6 -3.6508 -6.7540 -6.5154 21 17 -4.9633 -6.5489 -7.6330 22 6 -3.8898 -7.2735 -5.2537 23 7 -2.8904 -7.4292 -4.4037 24 6 -0.4212 -3.8906 -1.2284 25 6 0.3696 -2.5787 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6250 -2.5570 0.8900 28 1 2.8886 -3.5919 0.8755 29 1 2.8554 -3.6192 -0.9042 30 1 2.1749 -5.8175 -0.0677 31 1 0.9396 -5.0728 0.9775 32 1 -1.0738 -5.3695 -3.0130 33 1 0.4106 -7.3735 -4.3387 34 1 -0.6939 -8.1628 -3.1875 35 1 -0.4219 -6.2853 -6.3017 36 1 -4.8929 -7.5503 -4.9646 37 1 -1.1148 -3.8863 -0.3876 38 1 -0.9769 -3.9970 -2.1601 39 1 -0.3228 -1.7370 -1.2600 40 1 0.9970 -2.5458 -2.1399 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923712063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:45 Heat of formation + Delta-G solvation = 16.103087 kcal Electronic energy + Delta-G solvation = -24525.730984 eV Core-core repulsion = 20787.651831 eV Total energy + Delta-G solvation = -3738.079152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72710 -39.97086 -37.40514 -37.02961 -35.41594 -34.52861 -33.55149 -32.14657 -30.94475 -30.04516 -27.46509 -25.94598 -25.33665 -23.45420 -22.81076 -22.19323 -20.30458 -19.10136 -18.46745 -17.98648 -17.75307 -16.51979 -16.26225 -16.01098 -15.46141 -15.27961 -14.72774 -14.53802 -14.15920 -13.74196 -13.52765 -13.13315 -13.02019 -12.70814 -12.61879 -12.51787 -12.26747 -12.20869 -11.89988 -11.64176 -11.60530 -11.33746 -10.94617 -10.68657 -10.41567 -10.21484 -9.91973 -9.72628 -9.65276 -9.55064 -9.18579 -9.11410 -8.96609 -8.39955 -7.95408 -6.05560 -4.11582 -0.01622 0.46677 1.14336 2.72829 3.18318 3.28248 3.33095 3.36138 3.43946 3.48628 3.69898 3.80462 4.18153 4.27746 4.39019 4.46799 4.87988 5.23545 5.28913 5.39365 5.49284 5.61741 5.75699 5.91253 6.03902 6.14981 6.23089 6.43372 6.44574 6.53165 6.65116 6.79711 6.96223 7.06711 7.10188 7.17658 7.37546 7.64164 7.89453 8.00395 8.20622 8.37917 8.83709 8.91736 9.53612 10.99852 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.002695 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.787641 B =10388.358301 C =11774.187275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.129 3.871 12 N -0.616 5.616 13 C 0.710 3.290 14 O -0.601 6.601 15 N -0.748 5.748 16 C 0.197 3.803 17 C 0.065 3.935 18 C 0.094 3.906 19 N -0.430 5.430 20 C 0.124 3.876 21 Cl -0.010 7.010 22 C 0.076 3.924 23 N -0.404 5.404 24 C 0.111 3.889 25 C -0.123 4.123 26 H 0.261 0.739 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.398 0.602 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.185 0.815 36 H 0.183 0.817 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -14.130 -11.615 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.163 4.163 11 C 0.007 3.993 12 N -0.352 5.352 13 C 0.412 3.588 14 O -0.481 6.481 15 N -0.407 5.407 16 C 0.071 3.929 17 C -0.076 4.076 18 C -0.067 4.067 19 N -0.147 5.147 20 C -0.043 4.043 21 Cl 0.018 6.982 22 C -0.086 4.086 23 N -0.119 5.119 24 C -0.012 4.012 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.829 -14.626 -11.629 20.667 hybrid contribution -0.155 1.477 -0.371 1.531 sum -8.984 -13.149 -12.000 19.940 Atomic orbital electron populations 1.69826 1.05848 1.26564 1.50923 1.24960 0.94877 0.99058 0.95078 0.86674 0.79632 0.83157 0.78635 1.20345 1.21332 1.20287 1.21177 0.92943 0.90573 1.50297 0.92718 1.18619 0.92645 0.91791 0.93848 1.22024 0.98900 0.94299 1.01031 1.21592 0.91119 0.99687 0.86916 1.47415 1.38170 1.20665 1.28946 1.15725 0.81358 0.82525 0.79227 1.90865 1.40171 1.41497 1.75557 1.45134 1.36360 1.22529 1.36716 1.19803 0.93170 0.89956 0.89971 1.22470 0.93664 0.96160 0.95300 1.23776 0.99122 0.94139 0.89652 1.67904 0.98729 1.13248 1.34795 1.22984 0.90785 0.98946 0.91595 1.98442 1.42208 1.95453 1.62081 1.23704 1.00381 0.96028 0.88438 1.68480 0.99194 1.11650 1.32568 1.21898 0.91694 0.87941 0.99634 1.22023 1.00042 0.94388 0.99745 0.92941 0.95437 0.92077 0.92911 0.90167 0.92363 0.76561 0.89116 0.89318 0.79851 0.80049 0.91928 0.92805 0.87828 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 11.30 55.43 0.63 -23.51 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.43 8.56 -34.44 -0.29 -13.73 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.15 2.07 -91.72 -0.19 0.96 16 10 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 11 C 0.13 2.33 6.44 -3.71 -0.02 2.30 16 12 N -0.62 -10.83 2.98 -178.47 -0.53 -11.37 16 13 C 0.71 12.10 8.29 -86.92 -0.72 11.38 16 14 O -0.60 -11.85 15.77 5.30 0.08 -11.77 16 15 N -0.75 -9.82 5.46 -66.41 -0.36 -10.19 16 16 C 0.20 2.08 6.01 -5.19 -0.03 2.04 16 17 C 0.06 0.62 6.15 -82.42 -0.51 0.11 16 18 C 0.09 0.82 10.86 -17.38 -0.19 0.64 16 19 N -0.43 -4.36 10.49 -10.17 -0.11 -4.47 16 20 C 0.12 1.13 7.29 -17.27 -0.13 1.00 16 21 Cl -0.01 -0.08 29.13 -51.86 -1.51 -1.59 16 22 C 0.08 0.63 11.01 -17.32 -0.19 0.44 16 23 N -0.40 -4.02 10.42 -9.26 -0.10 -4.12 16 24 C 0.11 1.92 6.38 -3.69 -0.02 1.90 16 25 C -0.12 -2.65 5.15 -26.61 -0.14 -2.79 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.44 6.99 -51.93 -0.36 1.07 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 4.89 5.96 -40.82 -0.24 4.65 16 33 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.79 5.66 -51.93 -0.29 0.50 16 39 H 0.10 2.49 6.03 -51.93 -0.31 2.17 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -30.35 347.08 -9.34 -39.68 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.98 Total: 3.31 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.67 Total: 3.14 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.47 Total: -53.64 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.35 -9.34 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923712063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.786 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds