Wall clock time and date at job start Tue Mar 31 2020 13:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48499 * 109.47340 * 240.00104 * 3 2 1 5 5 H 1.48500 * 109.47473 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46899 * 120.00344 * 3 2 1 7 7 C 1.37878 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53047 * 109.45846 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31368 * 178.62526 * 10 9 7 12 12 N 1.46931 * 108.88826 * 54.56747 * 11 10 9 13 13 C 1.34775 * 120.62344 * 126.46316 * 12 11 10 14 14 O 1.21578 * 120.00454 * 354.76255 * 13 12 11 15 15 N 1.34780 * 119.99446 * 174.77186 * 13 12 11 16 16 C 1.46496 * 119.99968 * 184.98091 * 15 13 12 17 17 C 1.50707 * 109.47260 * 179.97438 * 16 15 13 18 18 C 1.38339 * 119.98373 * 94.72140 * 17 16 15 19 19 N 1.32155 * 120.01901 * 179.75659 * 18 17 16 20 20 C 1.32240 * 119.97743 * 0.51898 * 19 18 17 21 21 Cl 1.73600 * 120.01454 * 179.75661 * 20 19 18 22 22 C 1.38523 * 119.97048 * 359.73492 * 20 19 18 23 23 N 1.32120 * 119.98066 * 0.02562 * 22 20 19 24 24 C 1.46952 * 118.71690 * 306.63710 * 12 11 10 25 25 C 1.53045 * 109.45145 * 59.94358 * 9 7 2 26 26 H 0.97008 * 119.99550 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46161 * 299.97374 * 9 7 2 28 28 H 1.09000 * 109.49209 * 58.67914 * 10 9 7 29 29 H 1.08993 * 109.52764 * 298.59743 * 10 9 7 30 30 H 1.08996 * 109.58313 * 174.42242 * 11 10 9 31 31 H 1.08994 * 109.58819 * 294.71120 * 11 10 9 32 32 H 0.97003 * 119.99848 * 4.97554 * 15 13 12 33 33 H 1.09002 * 109.47007 * 299.99501 * 16 15 13 34 34 H 1.08999 * 109.47801 * 59.99484 * 16 15 13 35 35 H 1.08001 * 119.99332 * 359.97438 * 18 17 16 36 36 H 1.08003 * 120.00980 * 179.97438 * 22 20 19 37 37 H 1.09000 * 109.46861 * 293.57854 * 24 12 11 38 38 H 1.08998 * 109.71491 * 173.28520 * 24 12 11 39 39 H 1.08996 * 109.49338 * 301.32855 * 25 9 7 40 40 H 1.08996 * 109.49491 * 61.42395 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6623 -0.0018 11 6 1.4765 -4.9867 0.0329 12 7 0.5193 -5.0102 -1.0816 13 6 0.5068 -6.0372 -1.9543 14 8 1.3525 -6.9076 -1.8811 15 7 -0.4432 -6.0992 -2.9084 16 6 -0.5237 -7.2686 -3.7871 17 6 -1.6631 -7.0905 -4.7573 18 6 -1.4245 -6.5668 -6.0153 19 7 -2.4223 -6.4148 -6.8684 20 6 -3.6508 -6.7540 -6.5154 21 17 -4.9633 -6.5489 -7.6330 22 6 -3.8898 -7.2735 -5.2537 23 7 -2.8904 -7.4292 -4.4037 24 6 -0.4212 -3.8906 -1.2284 25 6 0.3696 -2.5787 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6250 -2.5570 0.8900 28 1 2.8886 -3.5919 0.8755 29 1 2.8554 -3.6192 -0.9042 30 1 2.1749 -5.8175 -0.0677 31 1 0.9396 -5.0728 0.9775 32 1 -1.0738 -5.3695 -3.0130 33 1 0.4106 -7.3735 -4.3387 34 1 -0.6939 -8.1628 -3.1875 35 1 -0.4219 -6.2853 -6.3017 36 1 -4.8929 -7.5503 -4.9646 37 1 -1.1148 -3.8863 -0.3876 38 1 -0.9769 -3.9970 -2.1601 39 1 -0.3228 -1.7370 -1.2600 40 1 0.9970 -2.5458 -2.1399 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923712063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:44 Heat of formation + Delta-G solvation = -3.346289 kcal Electronic energy + Delta-G solvation = -24526.574372 eV Core-core repulsion = 20787.651831 eV Total energy + Delta-G solvation = -3738.922540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.43265 -41.30969 -38.61172 -37.99150 -36.41215 -35.40285 -35.26053 -33.35481 -32.37025 -31.58512 -28.58670 -27.50578 -26.01665 -24.80401 -24.11881 -23.57168 -21.77013 -20.52454 -19.31610 -19.16936 -18.49782 -18.28037 -17.52305 -16.90436 -16.57056 -16.51674 -16.29084 -15.54364 -15.24951 -15.00416 -14.85980 -14.72691 -14.32254 -14.28996 -13.70295 -13.61007 -13.33895 -13.15316 -13.09256 -12.93030 -12.78679 -12.54665 -12.46871 -12.32168 -12.13053 -11.97884 -11.47910 -11.28401 -10.97639 -10.77961 -10.43662 -10.38270 -10.33658 -10.24990 -9.39962 -8.06674 -6.19432 -0.70417 -0.20987 0.49423 1.43435 1.44236 1.51232 1.65547 2.12676 2.35112 2.45160 2.74018 2.96309 3.05128 3.18108 3.20015 3.55399 3.79516 4.09322 4.24318 4.33400 4.37529 4.46358 4.53977 4.58577 4.62062 4.69634 4.91419 4.95035 5.01009 5.22599 5.24326 5.35507 5.44935 5.49954 5.66485 5.85918 5.98769 6.02892 6.14980 6.39144 6.41242 6.89754 6.91426 7.48127 7.51742 8.96283 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.002695 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.787641 B =10388.358301 C =11774.187275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.047 0.953 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.136 3.864 12 N -0.621 5.621 13 C 0.709 3.291 14 O -0.628 6.628 15 N -0.735 5.735 16 C 0.199 3.801 17 C 0.063 3.937 18 C 0.096 3.904 19 N -0.451 5.451 20 C 0.119 3.881 21 Cl -0.002 7.002 22 C 0.080 3.920 23 N -0.421 5.421 24 C 0.123 3.877 25 C -0.114 4.114 26 H 0.261 0.739 27 H 0.004 0.996 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.403 0.597 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.205 0.795 36 H 0.209 0.791 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.745 -14.668 -12.433 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.066 0.934 9 C 0.027 3.973 10 C -0.152 4.152 11 C 0.013 3.987 12 N -0.357 5.357 13 C 0.411 3.589 14 O -0.510 6.510 15 N -0.394 5.394 16 C 0.074 3.926 17 C -0.078 4.078 18 C -0.064 4.064 19 N -0.168 5.168 20 C -0.048 4.048 21 Cl 0.026 6.974 22 C -0.082 4.082 23 N -0.136 5.136 24 C 0.001 3.999 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.222 0.778 36 H 0.226 0.774 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.420 -15.173 -12.470 21.782 hybrid contribution -0.017 1.629 -0.151 1.636 sum -9.437 -13.544 -12.621 20.780 Atomic orbital electron populations 1.69939 1.06763 1.27113 1.51298 1.25617 0.95685 1.01866 0.94932 0.85788 0.78543 0.79760 0.78588 1.20081 1.20940 1.19993 1.21532 0.92930 0.92274 1.50459 0.93441 1.18598 0.93073 0.91970 0.93633 1.21869 0.98278 0.94413 1.00674 1.21477 0.91303 0.98189 0.87768 1.47394 1.38168 1.20977 1.29144 1.15810 0.81662 0.81925 0.79498 1.90848 1.41434 1.42366 1.76330 1.45058 1.35148 1.23327 1.35818 1.19883 0.94352 0.88596 0.89769 1.22274 0.93327 0.96869 0.95299 1.24058 0.99784 0.93407 0.89135 1.67935 0.99385 1.14032 1.35446 1.23185 0.90790 0.98744 0.92104 1.98445 1.41727 1.95373 1.61854 1.24091 1.01090 0.95170 0.87817 1.68465 0.99674 1.12127 1.33356 1.21715 0.91052 0.85744 1.01420 1.21776 0.99344 0.95933 0.98192 0.92989 0.97786 0.91690 0.93970 0.89831 0.91269 0.75933 0.87862 0.89827 0.77823 0.77422 0.91626 0.89799 0.90354 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.70 11.30 21.45 0.24 -49.46 16 2 C 0.02 0.95 5.30 84.65 0.45 1.40 16 3 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -28.37 8.56 25.60 0.22 -28.15 16 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.05 2.16 2.07 -11.51 -0.02 2.13 16 10 C -0.11 -4.57 5.30 30.68 0.16 -4.41 16 11 C 0.14 4.74 6.44 86.36 0.56 5.30 16 12 N -0.62 -21.02 2.98 -836.83 -2.49 -23.51 16 13 C 0.71 23.03 8.29 179.05 1.49 24.51 16 14 O -0.63 -23.90 15.77 -3.96 -0.06 -23.96 16 15 N -0.73 -17.84 5.46 -482.30 -2.63 -20.47 16 16 C 0.20 3.82 6.01 85.64 0.51 4.34 16 17 C 0.06 1.07 6.15 42.54 0.26 1.33 16 18 C 0.10 1.51 10.86 84.67 0.92 2.43 16 19 N -0.45 -8.39 10.49 -186.09 -1.95 -10.34 16 20 C 0.12 1.96 7.29 84.70 0.62 2.57 16 21 Cl 0.00 -0.03 29.13 -2.72 -0.08 -0.11 16 22 C 0.08 1.15 11.01 84.72 0.93 2.08 16 23 N -0.42 -7.57 10.42 -183.19 -1.91 -9.48 16 24 C 0.12 4.11 6.38 86.36 0.55 4.66 16 25 C -0.11 -4.89 5.15 30.68 0.16 -4.73 16 26 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 27 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.90 6.99 -2.39 -0.02 2.89 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.40 8.95 5.96 -92.71 -0.55 8.40 16 33 H 0.10 1.76 8.05 -2.39 -0.02 1.74 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.21 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 2.28 5.66 -2.39 -0.01 2.27 16 39 H 0.08 3.80 6.03 -2.39 -0.01 3.78 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.49 347.08 0.47 -64.01 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.53 Total: 15.42 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.80 Total: 13.48 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -8.74 Total: -113.27 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -64.49 0.47 -64.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923712063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.669 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds