Wall clock time and date at job start Tue Mar 31 2020 13:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35240 * 126.06540 * 2 1 4 4 C 1.40414 * 107.86275 * 180.14387 * 3 2 1 5 5 N 1.40158 * 125.96950 * 179.83308 * 4 3 2 6 6 C 1.34773 * 120.00236 * 359.71052 * 5 4 3 7 7 O 1.21285 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99854 * 180.02562 * 6 5 4 9 9 H 1.08994 * 108.86494 * 41.41486 * 8 6 5 10 10 C 1.52828 * 108.88875 * 282.91781 * 8 6 5 11 11 S 1.82050 * 108.21898 * 187.42362 * 10 8 6 12 12 C 1.81853 * 101.23957 * 61.40802 * 11 10 8 13 13 C 1.50196 * 109.00709 * 315.71103 * 12 11 10 14 14 O 1.21277 * 116.86998 * 200.75869 * 13 12 11 15 15 N 1.31770 * 126.30344 * 21.05520 * 13 12 11 16 16 N 1.31218 * 108.05385 * 359.56502 * 4 3 2 17 17 N 1.34966 * 126.06938 * 179.66650 * 2 1 3 18 18 C 1.46497 * 125.97678 * 0.04284 * 17 2 1 19 19 C 1.50693 * 109.47340 * 269.98931 * 18 17 2 20 20 H 1.07997 * 120.00310 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00070 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00348 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99677 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46932 * 89.99624 * 23 21 19 25 25 H 1.48501 * 109.47104 * 209.99413 * 23 21 19 26 26 H 1.48493 * 109.47304 * 329.99726 * 23 21 19 27 27 H 1.09005 * 109.46750 * 270.34193 * 1 2 3 28 28 H 1.08997 * 109.47376 * 30.33942 * 1 2 3 29 29 H 1.08994 * 109.47051 * 150.34099 * 1 2 3 30 30 H 1.07997 * 126.07359 * 359.97374 * 3 2 1 31 31 H 0.97001 * 119.99675 * 179.71277 * 5 4 3 32 32 H 1.08998 * 109.71555 * 307.10677 * 10 8 6 33 33 H 1.08999 * 109.71188 * 67.74213 * 10 8 6 34 34 H 1.09006 * 109.54057 * 75.77882 * 12 11 10 35 35 H 1.08997 * 109.54145 * 195.95269 * 12 11 10 36 36 H 0.97001 * 115.08400 * 173.21350 * 15 13 12 37 37 H 1.08999 * 109.46673 * 29.99181 * 18 17 2 38 38 H 1.09005 * 109.46817 * 149.98822 * 18 17 2 39 39 H 0.96999 * 120.00403 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 -0.0034 5 7 4.7734 1.4750 -0.0078 6 6 4.6366 2.8158 -0.0150 7 8 3.5302 3.3124 -0.0172 8 6 5.8586 3.6978 -0.0203 9 1 6.5967 3.2732 -0.7006 10 6 6.4495 3.7330 1.3887 11 16 7.7848 4.9701 1.4152 12 6 6.8708 6.4869 1.0014 13 6 5.9319 6.1977 -0.1347 14 8 5.5430 7.1482 -0.7799 15 7 5.4854 5.0116 -0.4951 16 7 3.6337 -0.6576 0.0042 17 7 2.3017 -1.0909 0.0063 18 6 1.8501 -2.4845 0.0136 19 6 1.6946 -2.9549 1.4368 20 1 1.9102 -2.2828 2.2542 21 6 1.2761 -4.2429 1.6954 22 7 1.1409 -4.6536 2.9374 23 14 0.9026 -5.4052 0.2814 24 1 2.1354 -6.1451 -0.0900 25 1 -0.1471 -6.3696 0.6975 26 1 0.4227 -4.6248 -0.8872 27 1 -0.3633 0.0061 1.0277 28 1 -0.3634 0.8869 -0.5191 29 1 -0.3633 -0.8930 -0.5085 30 1 1.9720 2.1211 -0.0004 31 1 5.6584 1.0778 -0.0056 32 1 5.6763 4.0110 2.1049 33 1 6.8517 2.7524 1.6432 34 1 6.3044 6.8200 1.8711 35 1 7.5728 7.2657 0.7034 36 1 4.8056 5.0209 -1.1870 37 1 0.8917 -2.5585 -0.5003 38 1 2.5850 -3.1072 -0.4967 39 1 0.8469 -5.5599 3.1193 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935183030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:18 Heat of formation + Delta-G solvation = 25.344725 kcal Electronic energy + Delta-G solvation = -24479.752409 eV Core-core repulsion = 20744.117711 eV Total energy + Delta-G solvation = -3735.634698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32159 -40.60891 -39.49587 -36.17482 -35.20996 -33.46198 -31.94287 -31.32631 -30.93189 -30.54469 -27.42165 -26.57458 -25.68404 -22.98201 -21.95590 -20.49391 -20.08955 -19.64798 -18.19771 -17.51292 -17.21545 -17.13439 -16.60239 -16.25238 -15.81737 -15.40636 -15.39812 -14.87124 -14.55484 -14.41200 -14.02049 -13.70437 -13.50992 -13.36091 -12.85956 -12.70009 -12.54405 -12.45051 -12.32830 -12.02711 -11.71077 -11.41891 -11.26338 -10.89239 -10.71349 -10.53403 -10.17936 -10.09745 -10.03089 -9.69498 -9.59449 -8.85792 -8.37673 -8.18663 -7.68750 -6.33827 -4.37753 0.84189 1.47651 1.89751 2.08026 2.25784 2.62501 2.77500 3.09674 3.15215 3.18031 3.41241 3.49679 3.68315 3.90462 4.14333 4.16879 4.28777 4.53723 4.72685 4.85635 4.94169 4.99165 5.18904 5.45787 5.67111 5.93705 5.96284 6.11030 6.21654 6.26851 6.36196 6.47016 6.56888 6.76253 7.13481 7.19574 7.30638 7.56252 7.69902 7.81700 8.21739 8.37846 8.70446 9.20836 10.78559 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.002520 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.022045 B =11109.556937 C =11683.389283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.098 3.902 3 C -0.287 4.287 4 C 0.263 3.737 5 N -0.620 5.620 6 C 0.510 3.490 7 O -0.498 6.498 8 C 0.136 3.864 9 H 0.117 0.883 10 C -0.102 4.102 11 S -0.211 6.211 12 C -0.108 4.108 13 C 0.530 3.470 14 O -0.540 6.540 15 N -0.694 5.694 16 N -0.312 5.312 17 N -0.313 5.313 18 C 0.231 3.769 19 C -0.543 4.543 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.885 5.885 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.414 0.586 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.411 0.589 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 16.503 -5.442 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C -0.318 4.318 4 C 0.010 3.990 5 N -0.268 5.268 6 C 0.291 3.709 7 O -0.370 6.370 8 C 0.024 3.976 9 H 0.134 0.866 10 C -0.251 4.251 11 S 0.017 5.983 12 C -0.258 4.258 13 C 0.315 3.685 14 O -0.418 6.418 15 N -0.347 5.347 16 N -0.142 5.142 17 N -0.095 5.095 18 C 0.112 3.888 19 C -0.581 4.581 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.522 5.522 23 Si 0.700 3.300 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.189 1.189 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.250 0.750 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.248 0.752 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.211 15.923 -5.201 20.157 hybrid contribution -1.605 -0.388 -0.818 1.843 sum 9.606 15.535 -6.018 19.231 Atomic orbital electron populations 1.20377 0.87632 1.02867 1.03604 1.21082 0.95029 0.86891 1.00295 1.21233 0.89606 0.99865 1.21084 1.18903 0.86980 0.89574 1.03564 1.42287 1.08008 1.04613 1.71907 1.20500 0.90870 0.82006 0.77506 1.90729 1.25982 1.73605 1.46712 1.20730 0.95222 0.83971 0.97668 0.86594 1.23754 1.00435 1.03771 0.97165 1.87432 1.15320 1.02680 1.92912 1.23679 1.01485 1.00216 1.00449 1.19226 0.81629 0.82449 0.85224 1.90848 1.58302 1.40263 1.52387 1.44588 1.43891 1.03814 1.42360 1.77272 0.99583 1.08435 1.28938 1.48565 1.01148 1.07180 1.52616 1.20046 0.95399 0.73511 0.99850 1.21142 1.47662 0.99100 0.90215 0.90106 1.24806 0.94390 0.97472 0.95799 1.69864 1.45456 1.18371 1.18483 0.86892 0.79050 0.81524 0.82555 1.19582 1.20476 1.18887 0.89940 0.90561 0.90979 0.82172 0.75024 0.87478 0.84414 0.85606 0.83818 0.75188 0.93104 0.93547 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.11 36.01 0.36 -0.98 16 2 C 0.10 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.29 9.52 -39.83 -0.38 -5.67 16 4 C 0.26 4.66 8.11 -154.39 -1.25 3.41 16 5 N -0.62 -7.51 5.45 -11.13 -0.06 -7.57 16 6 C 0.51 5.60 6.88 -10.99 -0.08 5.52 16 7 O -0.50 -7.27 13.32 5.55 0.07 -7.19 16 8 C 0.14 0.98 3.33 -70.19 -0.23 0.75 16 9 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 10 C -0.10 -0.64 5.89 37.07 0.22 -0.42 16 11 S -0.21 -1.43 22.39 -107.50 -2.41 -3.83 16 12 C -0.11 -0.73 6.62 35.76 0.24 -0.50 16 13 C 0.53 5.21 7.65 -12.55 -0.10 5.12 16 14 O -0.54 -7.37 17.60 5.56 0.10 -7.27 16 15 N -0.69 -6.21 4.64 -57.14 -0.26 -6.47 16 16 N -0.31 -6.48 12.59 31.44 0.40 -6.08 16 17 N -0.31 -6.79 3.59 -58.33 -0.21 -7.00 16 18 C 0.23 5.28 5.06 -5.20 -0.03 5.26 16 19 C -0.54 -14.64 9.94 -34.44 -0.34 -14.98 16 20 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 21 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 22 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 23 Si 0.87 19.49 27.47 -169.99 -4.67 14.82 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.09 7.07 -51.93 -0.37 0.73 16 30 H 0.16 2.86 5.92 -52.49 -0.31 2.55 16 31 H 0.41 3.63 8.82 -40.82 -0.36 3.27 16 32 H 0.11 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.13 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.14 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.41 4.07 7.85 -40.82 -0.32 3.75 16 37 H 0.05 1.08 6.10 -51.93 -0.32 0.77 16 38 H 0.05 1.05 7.57 -51.93 -0.39 0.66 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -34.52 343.94 -7.96 -42.47 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.62 Total: 6.90 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.25 Total: 0.88 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.63 Total: -51.96 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.17 Total: -14.46 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.82 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.41 Total: -3.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.52 -7.96 -42.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935183030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.818 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds