Wall clock time and date at job start Tue Mar 31 2020 13:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35240 * 126.06540 * 2 1 4 4 C 1.40414 * 107.86275 * 180.14387 * 3 2 1 5 5 N 1.40158 * 125.96950 * 179.83308 * 4 3 2 6 6 C 1.34773 * 120.00236 * 359.71052 * 5 4 3 7 7 O 1.21285 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99854 * 180.02562 * 6 5 4 9 9 H 1.08994 * 108.86494 * 41.41486 * 8 6 5 10 10 C 1.52828 * 108.88875 * 282.91781 * 8 6 5 11 11 S 1.82050 * 108.21898 * 187.42362 * 10 8 6 12 12 C 1.81853 * 101.23957 * 61.40802 * 11 10 8 13 13 C 1.50196 * 109.00709 * 315.71103 * 12 11 10 14 14 O 1.21277 * 116.86998 * 200.75869 * 13 12 11 15 15 N 1.31770 * 126.30344 * 21.05520 * 13 12 11 16 16 N 1.31218 * 108.05385 * 359.56502 * 4 3 2 17 17 N 1.34966 * 126.06938 * 179.66650 * 2 1 3 18 18 C 1.46497 * 125.97678 * 0.04284 * 17 2 1 19 19 C 1.50693 * 109.47340 * 269.98931 * 18 17 2 20 20 H 1.07997 * 120.00310 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00070 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00348 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99677 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46932 * 89.99624 * 23 21 19 25 25 H 1.48501 * 109.47104 * 209.99413 * 23 21 19 26 26 H 1.48493 * 109.47304 * 329.99726 * 23 21 19 27 27 H 1.09005 * 109.46750 * 270.34193 * 1 2 3 28 28 H 1.08997 * 109.47376 * 30.33942 * 1 2 3 29 29 H 1.08994 * 109.47051 * 150.34099 * 1 2 3 30 30 H 1.07997 * 126.07359 * 359.97374 * 3 2 1 31 31 H 0.97001 * 119.99675 * 179.71277 * 5 4 3 32 32 H 1.08998 * 109.71555 * 307.10677 * 10 8 6 33 33 H 1.08999 * 109.71188 * 67.74213 * 10 8 6 34 34 H 1.09006 * 109.54057 * 75.77882 * 12 11 10 35 35 H 1.08997 * 109.54145 * 195.95269 * 12 11 10 36 36 H 0.97001 * 115.08400 * 173.21350 * 15 13 12 37 37 H 1.08999 * 109.46673 * 29.99181 * 18 17 2 38 38 H 1.09005 * 109.46817 * 149.98822 * 18 17 2 39 39 H 0.96999 * 120.00403 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 -0.0034 5 7 4.7734 1.4750 -0.0078 6 6 4.6366 2.8158 -0.0150 7 8 3.5302 3.3124 -0.0172 8 6 5.8586 3.6978 -0.0203 9 1 6.5967 3.2732 -0.7006 10 6 6.4495 3.7330 1.3887 11 16 7.7848 4.9701 1.4152 12 6 6.8708 6.4869 1.0014 13 6 5.9319 6.1977 -0.1347 14 8 5.5430 7.1482 -0.7799 15 7 5.4854 5.0116 -0.4951 16 7 3.6337 -0.6576 0.0042 17 7 2.3017 -1.0909 0.0063 18 6 1.8501 -2.4845 0.0136 19 6 1.6946 -2.9549 1.4368 20 1 1.9102 -2.2828 2.2542 21 6 1.2761 -4.2429 1.6954 22 7 1.1409 -4.6536 2.9374 23 14 0.9026 -5.4052 0.2814 24 1 2.1354 -6.1451 -0.0900 25 1 -0.1471 -6.3696 0.6975 26 1 0.4227 -4.6248 -0.8872 27 1 -0.3633 0.0061 1.0277 28 1 -0.3634 0.8869 -0.5191 29 1 -0.3633 -0.8930 -0.5085 30 1 1.9720 2.1211 -0.0004 31 1 5.6584 1.0778 -0.0056 32 1 5.6763 4.0110 2.1049 33 1 6.8517 2.7524 1.6432 34 1 6.3044 6.8200 1.8711 35 1 7.5728 7.2657 0.7034 36 1 4.8056 5.0209 -1.1870 37 1 0.8917 -2.5585 -0.5003 38 1 2.5850 -3.1072 -0.4967 39 1 0.8469 -5.5599 3.1193 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935183030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:17 Heat of formation + Delta-G solvation = -0.587910 kcal Electronic energy + Delta-G solvation = -24480.876933 eV Core-core repulsion = 20744.117711 eV Total energy + Delta-G solvation = -3736.759222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49627 -41.67982 -40.50633 -37.03795 -36.42259 -35.28791 -33.39138 -32.83115 -31.84433 -31.14112 -29.08893 -27.93740 -26.54068 -24.59108 -23.16952 -21.39052 -21.30980 -20.82822 -19.24056 -19.10527 -18.33720 -18.00049 -17.57073 -17.31258 -16.94098 -16.57620 -16.45173 -16.10475 -15.78000 -15.38749 -15.22964 -14.89439 -14.54167 -14.45659 -14.14434 -13.90086 -13.77507 -13.67987 -13.46215 -13.25843 -12.94123 -12.84271 -12.58093 -12.28880 -12.01707 -11.83609 -11.65964 -11.49225 -11.39309 -10.90124 -10.85695 -10.44558 -9.64875 -9.17621 -8.90648 -8.40618 -6.51761 0.29788 0.69457 0.90464 1.16356 1.29891 1.36383 1.37608 1.43503 1.47354 1.87202 2.09227 2.26273 2.27084 2.92249 3.03219 3.24800 3.29834 3.74966 3.80958 4.04627 4.07982 4.24632 4.36099 4.38255 4.49640 4.51049 4.68592 4.77807 4.81169 4.92999 5.07280 5.18004 5.23171 5.32585 5.81392 5.96842 6.01114 6.14023 6.33653 6.51988 6.76176 6.82909 6.98195 7.12284 8.75894 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.002520 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.022045 B =11109.556937 C =11683.389283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.090 3.910 3 C -0.298 4.298 4 C 0.274 3.726 5 N -0.610 5.610 6 C 0.516 3.484 7 O -0.532 6.532 8 C 0.149 3.851 9 H 0.153 0.847 10 C -0.103 4.103 11 S -0.202 6.202 12 C -0.105 4.105 13 C 0.529 3.471 14 O -0.585 6.585 15 N -0.694 5.694 16 N -0.348 5.348 17 N -0.341 5.341 18 C 0.241 3.759 19 C -0.550 4.550 20 H 0.025 0.975 21 C 0.022 3.978 22 N -0.937 5.937 23 Si 0.949 3.051 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.234 1.234 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.431 0.569 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.405 0.595 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.101 16.702 -7.012 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.328 4.328 4 C 0.020 3.980 5 N -0.260 5.260 6 C 0.300 3.700 7 O -0.406 6.406 8 C 0.038 3.962 9 H 0.170 0.830 10 C -0.252 4.252 11 S 0.026 5.974 12 C -0.255 4.255 13 C 0.316 3.684 14 O -0.466 6.466 15 N -0.344 5.344 16 N -0.178 5.178 17 N -0.123 5.123 18 C 0.121 3.879 19 C -0.588 4.588 20 H 0.043 0.957 21 C -0.178 4.178 22 N -0.576 5.576 23 Si 0.770 3.230 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.157 1.157 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.184 0.816 31 H 0.270 0.730 32 H 0.119 0.881 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.241 0.759 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.120 16.139 -6.764 21.286 hybrid contribution -1.812 -0.297 -0.230 1.851 sum 10.308 15.841 -6.995 20.152 Atomic orbital electron populations 1.20513 0.85412 1.04691 1.03805 1.21738 0.96658 0.86486 0.99136 1.21437 0.90099 0.99914 1.21381 1.19231 0.88599 0.89208 1.00997 1.42363 1.07369 1.04561 1.71714 1.21180 0.91605 0.81537 0.75672 1.90715 1.27876 1.74074 1.47963 1.20875 0.93570 0.82368 0.99407 0.83027 1.23831 1.00352 1.05037 0.96009 1.87489 1.14892 1.02321 1.92718 1.23694 1.01329 1.00871 0.99610 1.19731 0.81487 0.81907 0.85313 1.90828 1.60119 1.41583 1.54035 1.44676 1.43467 1.04351 1.41917 1.77186 0.99633 1.09937 1.31009 1.48448 1.01940 1.07095 1.54866 1.19795 0.96486 0.74633 0.97023 1.21240 1.47682 0.98681 0.91170 0.95654 1.25815 0.93762 0.99313 0.98887 1.70026 1.46950 1.19203 1.21400 0.85701 0.79044 0.78846 0.79361 1.18978 1.20150 1.15661 0.90427 0.87444 0.90439 0.81591 0.72953 0.88068 0.82154 0.84239 0.82623 0.75889 0.90918 0.93190 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.59 10.11 71.24 0.72 -1.87 16 2 C 0.09 3.42 6.92 41.39 0.29 3.71 16 3 C -0.30 -10.83 9.52 22.11 0.21 -10.62 16 4 C 0.27 9.55 8.11 133.33 1.08 10.63 16 5 N -0.61 -13.75 5.45 -307.52 -1.68 -15.43 16 6 C 0.52 10.45 6.88 87.66 0.60 11.06 16 7 O -0.53 -15.03 13.32 -3.05 -0.04 -15.07 16 8 C 0.15 1.78 3.33 44.54 0.15 1.93 16 9 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 10 C -0.10 -1.01 5.89 71.92 0.42 -0.59 16 11 S -0.20 -2.19 22.39 -56.49 -1.27 -3.45 16 12 C -0.10 -1.23 6.62 71.08 0.47 -0.76 16 13 C 0.53 9.80 7.65 87.96 0.67 10.47 16 14 O -0.58 -15.82 17.60 -3.02 -0.05 -15.87 16 15 N -0.69 -11.38 4.64 -454.72 -2.11 -13.49 16 16 N -0.35 -14.42 12.59 -54.45 -0.69 -15.11 16 17 N -0.34 -14.83 3.59 -338.46 -1.22 -16.05 16 18 C 0.24 10.90 5.06 85.63 0.43 11.33 16 19 C -0.55 -30.43 9.94 25.60 0.25 -30.17 16 20 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 21 C 0.02 1.20 5.47 84.66 0.46 1.67 16 22 N -0.94 -55.80 13.96 21.45 0.30 -55.50 16 23 Si 0.95 39.52 27.47 68.60 1.88 41.41 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 27 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 2.23 7.07 -2.39 -0.02 2.21 16 30 H 0.17 5.83 5.92 -2.91 -0.02 5.81 16 31 H 0.43 6.56 8.82 -92.71 -0.82 5.74 16 32 H 0.10 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.40 7.70 7.85 -92.71 -0.73 6.97 16 37 H 0.07 2.95 6.10 -2.39 -0.01 2.94 16 38 H 0.05 2.21 7.57 -2.38 -0.02 2.20 16 39 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -78.55 343.94 0.43 -78.12 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.48 Total: 23.65 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.77 Total: 6.79 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.39 Total: -115.57 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.09 Total: -30.95 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.88 Total: 41.41 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -1.27 Total: -3.45 kcal Total: -78.55 0.43 -78.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935183030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.536 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds