Wall clock time and date at job start Tue Mar 31 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31931 * 119.01521 * 2 1 4 4 C 1.32141 * 121.05573 * 180.02562 * 3 2 1 5 5 C 1.38988 * 119.12015 * 359.74477 * 4 3 2 6 6 Cl 1.73609 * 120.88457 * 180.25434 * 5 4 3 7 7 C 1.39621 * 118.23233 * 0.51600 * 5 4 3 8 8 C 1.48374 * 120.56906 * 179.76111 * 7 5 4 9 9 O 1.21490 * 119.99634 * 359.72105 * 8 7 5 10 10 N 1.34768 * 120.00374 * 179.72075 * 8 7 5 11 11 C 1.47422 * 125.64957 * 180.02562 * 10 8 7 12 12 C 1.54913 * 104.83234 * 204.09300 * 11 10 8 13 13 H 1.08993 * 111.00353 * 81.06585 * 12 11 10 14 14 C 1.53005 * 111.00185 * 204.91445 * 12 11 10 15 15 C 1.55149 * 101.58081 * 322.98715 * 12 11 10 16 16 H 1.09002 * 110.87705 * 277.07084 * 15 12 11 17 17 N 1.46506 * 110.72085 * 153.86559 * 15 12 11 18 18 C 1.36932 * 120.00027 * 160.02319 * 17 15 12 19 19 H 1.07994 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99707 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00000 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00147 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47033 * 90.00199 * 22 20 18 24 24 H 1.48506 * 109.47196 * 210.00023 * 22 20 18 25 25 H 1.48496 * 109.47398 * 330.00560 * 22 20 18 26 26 C 1.47022 * 125.65028 * 359.97390 * 10 8 7 27 27 N 1.31515 * 119.02149 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46725 * 269.97710 * 1 2 3 29 29 H 1.08997 * 109.47750 * 29.97502 * 1 2 3 30 30 H 1.09002 * 109.47173 * 149.98216 * 1 2 3 31 31 H 1.08000 * 120.43726 * 180.02562 * 4 3 2 32 32 H 1.09006 * 110.36580 * 322.93149 * 11 10 8 33 33 H 1.09007 * 110.37042 * 85.14354 * 11 10 8 34 34 H 1.09001 * 109.46810 * 172.19648 * 14 12 11 35 35 H 1.08995 * 109.47077 * 292.19383 * 14 12 11 36 36 H 1.08997 * 109.47293 * 52.19634 * 14 12 11 37 37 H 0.96996 * 119.99556 * 340.02773 * 17 15 12 38 38 H 0.96990 * 120.00519 * 180.02562 * 21 20 18 39 39 H 1.09005 * 109.88380 * 59.55819 * 26 10 8 40 40 H 1.09004 * 109.88423 * 298.39725 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4674 1.2008 -0.0005 5 6 4.1866 0.0114 0.0044 6 17 5.9227 0.0198 0.0105 7 6 3.4758 -1.1903 -0.0015 8 6 4.1912 -2.4902 -0.0020 9 8 5.4058 -2.5150 -0.0025 10 7 3.4936 -3.6433 -0.0020 11 6 4.0739 -4.9985 -0.0019 12 6 2.9733 -5.9011 -0.6132 13 1 2.9789 -5.8414 -1.7015 14 6 3.1291 -7.3494 -0.1448 15 6 1.6861 -5.2628 -0.0277 16 1 1.4928 -5.6322 0.9795 17 7 0.5376 -5.5180 -0.9007 18 6 -0.7349 -5.4159 -0.4054 19 1 -0.8919 -5.1467 0.6286 20 6 -1.8231 -5.6583 -1.2325 21 7 -3.0463 -5.5596 -0.7566 22 14 -1.5515 -6.1231 -3.0212 23 1 -1.4490 -7.5999 -3.1387 24 1 -2.6942 -5.6397 -3.8372 25 1 -0.2955 -5.4994 -3.5095 26 6 2.0279 -3.7581 -0.0009 27 7 2.1450 -1.1500 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 3.9811 2.1508 -0.0001 32 1 4.9728 -5.0263 -0.6179 33 1 4.3028 -5.3132 1.0163 34 1 2.2690 -7.9323 -0.4743 35 1 4.0391 -7.7727 -0.5698 36 1 3.1901 -7.3749 0.9431 37 1 0.6787 -5.7595 -1.8295 38 1 -3.8067 -5.7293 -1.3343 39 1 1.6170 -3.2689 -0.8841 40 1 1.6209 -3.3014 0.9014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939262045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:42 Heat of formation + Delta-G solvation = 23.083804 kcal Electronic energy + Delta-G solvation = -25533.194470 eV Core-core repulsion = 21795.418024 eV Total energy + Delta-G solvation = -3737.776446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57958 -40.97206 -39.10182 -37.83136 -35.99956 -35.33066 -34.16148 -33.81620 -32.80840 -29.48129 -29.47367 -28.24261 -26.40344 -25.50997 -24.18519 -22.88928 -21.61075 -21.09845 -19.57824 -19.36928 -18.44959 -17.52256 -17.38094 -17.01454 -16.81186 -16.27706 -15.91921 -15.68272 -15.02206 -14.83379 -14.71033 -14.57679 -14.22334 -14.07569 -13.76531 -13.59376 -13.35072 -13.22365 -12.95228 -12.93440 -12.85421 -12.55913 -12.52195 -12.25137 -12.19220 -12.10091 -11.91535 -11.76706 -11.49718 -11.30438 -10.98690 -10.39177 -10.34016 -9.71971 -9.31318 -7.97177 -5.31501 -0.92936 -0.44133 0.75415 1.41866 1.43174 1.47360 1.49913 1.62207 2.42017 2.51661 2.52998 2.75012 3.02133 3.32198 3.35667 3.49102 3.64698 3.78612 3.86167 4.11599 4.18566 4.35878 4.44435 4.63048 4.63927 4.65027 4.70568 4.75546 4.89840 5.00701 5.08156 5.14687 5.19737 5.20712 5.32588 5.44766 5.50128 5.82477 6.23474 6.27521 6.61798 6.83913 7.10865 7.84903 8.03883 9.23742 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.004460 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.603148 B = 6276.276905 C = 7910.710365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.313 3.687 3 N -0.494 5.494 4 C 0.179 3.821 5 C -0.114 4.114 6 Cl -0.001 7.001 7 C 0.128 3.872 8 C 0.569 3.431 9 O -0.532 6.532 10 N -0.591 5.591 11 C 0.116 3.884 12 C -0.105 4.105 13 H 0.081 0.919 14 C -0.130 4.130 15 C 0.170 3.830 16 H 0.070 0.930 17 N -0.736 5.736 18 C -0.224 4.224 19 H 0.063 0.937 20 C -0.053 4.053 21 N -0.979 5.979 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.256 1.256 26 C 0.108 3.892 27 N -0.488 5.488 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.366 0.634 38 H 0.256 0.744 39 H 0.063 0.937 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.435 10.394 1.175 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.209 5.209 4 C 0.009 3.991 5 C -0.147 4.147 6 Cl 0.028 6.972 7 C -0.020 4.020 8 C 0.355 3.645 9 O -0.409 6.409 10 N -0.323 5.323 11 C -0.006 4.006 12 C -0.125 4.125 13 H 0.099 0.901 14 C -0.188 4.188 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.378 5.378 18 C -0.355 4.355 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.630 5.630 22 Si 0.773 3.227 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.181 1.181 26 C -0.017 4.017 27 N -0.206 5.206 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.241 0.759 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.200 0.800 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.097 10.395 1.327 19.207 hybrid contribution 0.429 -0.197 -1.024 1.128 sum 16.526 10.198 0.303 19.422 Atomic orbital electron populations 1.20739 0.83205 1.05218 1.05318 1.23904 0.99660 0.82632 0.89085 1.68439 1.09498 1.29777 1.13192 1.24055 0.88721 0.98094 0.88185 1.22959 0.89813 0.95954 1.05974 1.98426 1.04147 1.98599 1.95993 1.21581 0.90137 0.94198 0.96059 1.17515 0.86029 0.82464 0.78479 1.90833 1.12263 1.86522 1.51274 1.48409 1.08882 1.05735 1.69257 1.22483 0.96794 0.79021 1.02292 1.22600 0.93131 0.96231 1.00546 0.90065 1.21608 1.02381 0.92943 1.01862 1.21496 0.86381 0.91290 0.94814 0.91214 1.42627 1.01605 1.83719 1.09851 1.18979 0.82753 1.37810 0.95920 0.91888 1.25326 0.94747 1.02686 1.01742 1.69856 0.98155 1.57997 1.36962 0.85578 0.77303 0.78355 0.81499 1.20514 1.22740 1.18131 1.22916 0.77443 0.99542 1.01847 1.68741 1.07370 1.31342 1.13110 0.87945 0.87378 0.90053 0.75936 0.89473 0.89427 0.92864 0.90451 0.91587 0.80005 0.93456 0.91860 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.96 10.31 71.23 0.73 -1.23 16 2 C 0.31 8.27 7.64 138.79 1.06 9.33 16 3 N -0.49 -11.41 10.31 -187.77 -1.94 -13.35 16 4 C 0.18 3.47 11.14 84.83 0.94 4.41 16 5 C -0.11 -2.77 6.40 22.78 0.15 -2.63 16 6 Cl 0.00 -0.02 26.25 -2.72 -0.07 -0.09 16 7 C 0.13 3.80 6.75 41.98 0.28 4.09 16 8 C 0.57 18.08 7.85 86.94 0.68 18.76 16 9 O -0.53 -17.75 14.40 -3.68 -0.05 -17.80 16 10 N -0.59 -18.10 3.33 -814.58 -2.71 -20.81 16 11 C 0.12 2.93 6.37 86.86 0.55 3.49 16 12 C -0.11 -2.81 3.25 -9.40 -0.03 -2.84 16 13 H 0.08 2.22 8.00 -2.39 -0.02 2.20 16 14 C -0.13 -2.93 9.31 71.98 0.67 -2.26 16 15 C 0.17 5.87 3.06 46.18 0.14 6.01 16 16 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 17 N -0.74 -31.43 4.98 -317.34 -1.58 -33.01 16 18 C -0.22 -11.79 10.46 84.04 0.88 -10.92 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 20 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 21 N -0.98 -59.93 13.97 21.65 0.30 -59.63 16 22 Si 0.94 43.47 27.73 68.60 1.90 45.37 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.26 -10.75 6.52 99.48 0.65 -10.10 16 26 C 0.11 3.67 5.17 86.73 0.45 4.12 16 27 N -0.49 -14.81 6.96 -177.06 -1.23 -16.04 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.09 2.09 8.04 -2.38 -0.02 2.07 16 33 H 0.09 1.99 7.99 -2.38 -0.02 1.97 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 37 H 0.37 15.27 5.58 -92.71 -0.52 14.75 16 38 H 0.26 15.09 8.31 -92.72 -0.77 14.32 16 39 H 0.06 2.41 7.33 -2.38 -0.02 2.39 16 40 H 0.06 2.17 7.56 -2.38 -0.02 2.15 16 Total: -1.00 -66.64 347.60 2.10 -64.54 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.50 Total: 22.97 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 6.98 Total: 27.85 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -7.16 Total: -142.84 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.07 Total: -0.09 kcal Total: -66.64 2.10 -64.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939262045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.626 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds