Wall clock time and date at job start Tue Mar 31 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47346 * 2 1 4 4 N 1.34225 * 126.28264 * 264.97812 * 3 2 1 5 5 H 0.97004 * 125.74004 * 0.05701 * 4 3 2 6 6 N 1.39935 * 108.52515 * 180.02562 * 4 3 2 7 7 C 1.30538 * 108.89198 * 0.02562 * 6 4 3 8 8 Cl 1.73596 * 126.00278 * 179.97438 * 7 6 4 9 9 C 1.38074 * 126.27730 * 85.00146 * 3 2 1 10 10 C 1.47381 * 126.42328 * 359.95792 * 9 3 2 11 11 O 1.21607 * 120.00650 * 270.00099 * 10 9 3 12 12 N 1.34780 * 119.99891 * 89.99823 * 10 9 3 13 13 C 1.46495 * 120.00092 * 179.97438 * 12 10 9 14 14 H 1.08998 * 115.51847 * 9.59264 * 13 12 10 15 15 C 1.52998 * 117.44533 * 224.24224 * 13 12 10 16 16 H 1.09005 * 119.53984 * 4.11891 * 15 13 12 17 17 C 1.57690 * 116.11284 * 161.64307 * 15 13 12 18 18 N 1.48148 * 104.67922 * 87.30666 * 17 15 13 19 19 C 1.36939 * 127.83630 * 139.77199 * 18 17 15 20 20 H 1.07995 * 120.00337 * 344.36070 * 19 18 17 21 21 C 1.38814 * 119.99466 * 164.36130 * 19 18 17 22 22 N 1.31613 * 120.00107 * 350.57059 * 21 19 18 23 23 Si 1.86802 * 119.99842 * 170.57229 * 21 19 18 24 24 H 1.48496 * 109.46918 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47266 * 119.99648 * 23 21 19 26 26 H 1.48497 * 109.47130 * 240.00283 * 23 21 19 27 27 C 1.48141 * 104.32208 * 319.77730 * 18 17 15 28 28 C 1.53009 * 117.44085 * 155.00444 * 13 12 10 29 29 H 1.08997 * 119.53719 * 355.88298 * 28 13 12 30 30 H 1.08993 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46883 * 299.99569 * 1 2 3 32 32 H 1.09001 * 109.46855 * 59.99295 * 1 2 3 33 33 H 1.08999 * 109.46883 * 240.00431 * 2 1 3 34 34 H 1.09001 * 109.47479 * 120.00276 * 2 1 3 35 35 H 0.97007 * 120.00194 * 0.02562 * 12 10 9 36 36 H 1.09001 * 110.92119 * 328.22911 * 17 15 13 37 37 H 1.09003 * 109.83799 * 205.84319 * 17 15 13 38 38 H 0.97006 * 119.99896 * 180.02562 * 22 21 19 39 39 H 1.08998 * 110.40729 * 280.80071 * 27 18 17 40 40 H 1.09001 * 110.50420 * 158.41371 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3865 2.1381 -1.0778 5 1 2.3621 1.8292 -1.9971 6 7 2.7961 3.4068 -0.6526 7 6 2.6979 3.4690 0.6476 8 17 3.0923 4.8402 1.6363 9 6 2.2133 2.2234 1.1089 10 6 1.9508 1.8514 2.5106 11 8 0.8537 2.0482 2.9968 12 7 2.9268 1.2930 3.2537 13 6 2.6661 0.9237 4.6472 14 1 1.6236 0.9792 4.9605 15 6 3.7329 1.2829 5.6833 16 1 4.6097 1.8533 5.3764 17 6 3.2627 1.2941 7.1884 18 7 3.4382 -0.1036 7.6470 19 6 3.9094 -0.5377 8.8573 20 1 4.4356 0.1447 9.5082 21 6 3.7105 -1.8550 9.2474 22 7 2.9150 -2.6357 8.5475 23 14 4.5721 -2.5196 10.7658 24 1 5.4052 -1.4493 11.3704 25 1 3.5583 -2.9744 11.7510 26 1 5.4382 -3.6634 10.3828 27 6 2.9885 -0.9251 6.4991 28 6 3.5271 -0.1851 5.2557 29 1 4.2504 -0.7083 4.6302 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8021 1.1363 2.8661 36 1 2.2170 1.5914 7.2673 37 1 3.8947 1.9666 7.7684 38 1 2.7758 -3.5561 8.8204 39 1 1.9000 -0.9743 6.4703 40 1 3.4122 -1.9277 6.5579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960248848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:08 Heat of formation + Delta-G solvation = 89.317651 kcal Electronic energy + Delta-G solvation = -24639.021983 eV Core-core repulsion = 20904.117652 eV Total energy + Delta-G solvation = -3734.904330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90862 -39.49794 -38.04391 -37.10273 -34.53972 -34.41661 -32.68878 -31.68967 -30.37820 -29.58097 -27.00495 -25.71830 -24.59583 -23.06866 -22.22535 -21.30882 -20.44086 -19.72855 -19.27458 -18.16452 -16.87104 -16.63462 -16.33935 -15.67519 -15.46317 -15.05267 -14.71321 -14.35918 -14.13057 -13.73158 -13.57023 -13.20571 -13.06639 -12.72197 -12.37689 -12.21760 -12.19005 -11.73463 -11.59522 -11.49137 -11.47938 -11.02921 -10.97809 -10.84710 -10.34298 -10.18797 -10.13768 -9.95799 -9.81591 -9.72952 -9.23277 -9.08379 -8.73679 -8.30928 -6.86491 -5.80125 -3.13850 1.14763 1.15753 1.84169 2.47509 2.54316 3.26448 3.38434 3.44388 3.46671 4.03594 4.33493 4.35467 4.46718 4.60211 4.78607 4.87868 5.04273 5.16486 5.19324 5.38856 5.41521 5.47673 5.51687 5.58795 5.62871 5.76144 5.88886 5.90982 6.16229 6.24998 6.54069 6.56525 6.71179 6.82280 6.89292 6.91291 7.35288 7.53290 7.59311 7.71889 8.20248 8.27987 9.11051 9.73776 10.50897 11.34415 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002808 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.441731 B = 9968.175938 C =10881.189280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C 0.149 3.851 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.277 5.277 7 C 0.160 3.840 8 Cl 0.024 6.976 9 C -0.266 4.266 10 C 0.599 3.401 11 O -0.524 6.524 12 N -0.687 5.687 13 C 0.094 3.906 14 H 0.133 0.867 15 C -0.184 4.184 16 H 0.107 0.893 17 C 0.157 3.843 18 N -0.593 5.593 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.186 3.814 28 C -0.180 4.180 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.026 0.974 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 7.030 -22.131 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C 0.016 3.984 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.103 5.103 7 C -0.033 4.033 8 Cl 0.052 6.948 9 C -0.282 4.282 10 C 0.383 3.617 11 O -0.399 6.399 12 N -0.335 5.335 13 C -0.012 4.012 14 H 0.151 0.849 15 C -0.206 4.206 16 H 0.125 0.875 17 C 0.030 3.970 18 N -0.316 5.316 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.060 3.940 28 C -0.201 4.201 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.815 7.744 -22.511 23.819 hybrid contribution 0.890 -0.777 0.657 1.352 sum 0.075 6.967 -21.854 22.938 Atomic orbital electron populations 1.21781 0.92708 1.03128 1.03289 1.20441 0.97687 0.87682 1.05022 1.21496 0.95623 0.95245 0.86008 1.45841 1.51447 1.09233 1.09029 0.70589 1.77166 1.23444 0.98847 1.10808 1.22586 0.99835 0.90259 0.90594 1.98437 1.92080 1.39458 1.64855 1.19807 1.19055 0.94540 0.94784 1.17022 0.84232 0.76937 0.83542 1.90807 1.23425 1.53131 1.72514 1.45388 1.14528 1.61667 1.11904 1.21923 0.98171 1.02127 0.78942 0.84941 1.25093 1.00323 0.99414 0.95753 0.87501 1.21702 0.97397 0.88771 0.89093 1.45127 1.74972 0.99177 1.12348 1.19039 1.28413 0.95115 0.92838 0.90475 1.24892 0.99082 0.97455 0.98840 1.69908 1.38502 1.07012 1.40647 0.86046 0.78804 0.78756 0.82146 1.20363 1.21679 1.21653 1.21052 0.96153 0.95705 0.81084 1.24638 1.02581 0.91813 1.01052 0.88130 0.90988 0.90903 0.92561 0.89584 0.88119 0.76706 0.95088 0.93138 0.93611 0.95569 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.73 16 2 C -0.07 -0.46 6.27 -27.88 -0.17 -0.63 16 3 C 0.15 1.33 6.55 -81.60 -0.53 0.80 16 4 N -0.45 -3.49 7.28 33.86 0.25 -3.25 16 5 H 0.45 1.76 8.96 -182.72 -1.64 0.12 16 6 N -0.28 -3.09 12.64 33.18 0.42 -2.67 16 7 C 0.16 1.96 7.89 -16.90 -0.13 1.83 16 8 Cl 0.02 0.29 29.19 -51.86 -1.51 -1.23 16 9 C -0.27 -3.23 5.88 -105.04 -0.62 -3.84 16 10 C 0.60 8.69 7.26 -12.54 -0.09 8.60 16 11 O -0.52 -9.56 16.67 5.27 0.09 -9.47 16 12 N -0.69 -9.29 5.56 -54.89 -0.31 -9.59 16 13 C 0.09 1.55 5.92 -67.93 -0.40 1.15 16 14 H 0.13 2.48 7.40 -51.93 -0.38 2.10 16 15 C -0.18 -3.24 7.34 -87.38 -0.64 -3.88 16 16 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 17 C 0.16 3.31 7.09 -0.57 0.00 3.31 16 18 N -0.59 -15.05 3.38 -166.73 -0.56 -15.62 16 19 C -0.23 -6.24 10.35 -15.06 -0.16 -6.40 16 20 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 21 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 22 N -0.91 -26.44 10.88 55.49 0.60 -25.84 16 23 Si 0.91 21.73 29.56 -169.99 -5.03 16.70 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.19 4.38 5.69 -2.41 -0.01 4.37 16 28 C -0.18 -3.28 6.98 -89.21 -0.62 -3.90 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.40 4.45 8.81 -40.82 -0.36 4.10 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 2.36 6.53 -51.93 -0.34 2.02 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -33.23 358.23 -10.26 -43.49 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.49 Total: 1.66 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.12 Total: 0.42 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.40 Total: -56.97 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.23 -10.26 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960248848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.806 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds