Wall clock time and date at job start Tue Mar 31 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47346 * 2 1 4 4 N 1.34225 * 126.28264 * 264.97812 * 3 2 1 5 5 H 0.97004 * 125.74004 * 0.05701 * 4 3 2 6 6 N 1.39935 * 108.52515 * 180.02562 * 4 3 2 7 7 C 1.30538 * 108.89198 * 0.02562 * 6 4 3 8 8 Cl 1.73596 * 126.00278 * 179.97438 * 7 6 4 9 9 C 1.38074 * 126.27730 * 85.00146 * 3 2 1 10 10 C 1.47381 * 126.42328 * 359.95792 * 9 3 2 11 11 O 1.21607 * 120.00650 * 270.00099 * 10 9 3 12 12 N 1.34780 * 119.99891 * 89.99823 * 10 9 3 13 13 C 1.46495 * 120.00092 * 179.97438 * 12 10 9 14 14 H 1.08998 * 115.51847 * 9.59264 * 13 12 10 15 15 C 1.52998 * 117.44533 * 224.24224 * 13 12 10 16 16 H 1.09005 * 119.53984 * 4.11891 * 15 13 12 17 17 C 1.57690 * 116.11284 * 161.64307 * 15 13 12 18 18 N 1.48148 * 104.67922 * 87.30666 * 17 15 13 19 19 C 1.36939 * 127.83630 * 139.77199 * 18 17 15 20 20 H 1.07995 * 120.00337 * 344.36070 * 19 18 17 21 21 C 1.38814 * 119.99466 * 164.36130 * 19 18 17 22 22 N 1.31613 * 120.00107 * 350.57059 * 21 19 18 23 23 Si 1.86802 * 119.99842 * 170.57229 * 21 19 18 24 24 H 1.48496 * 109.46918 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47266 * 119.99648 * 23 21 19 26 26 H 1.48497 * 109.47130 * 240.00283 * 23 21 19 27 27 C 1.48141 * 104.32208 * 319.77730 * 18 17 15 28 28 C 1.53009 * 117.44085 * 155.00444 * 13 12 10 29 29 H 1.08997 * 119.53719 * 355.88298 * 28 13 12 30 30 H 1.08993 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46883 * 299.99569 * 1 2 3 32 32 H 1.09001 * 109.46855 * 59.99295 * 1 2 3 33 33 H 1.08999 * 109.46883 * 240.00431 * 2 1 3 34 34 H 1.09001 * 109.47479 * 120.00276 * 2 1 3 35 35 H 0.97007 * 120.00194 * 0.02562 * 12 10 9 36 36 H 1.09001 * 110.92119 * 328.22911 * 17 15 13 37 37 H 1.09003 * 109.83799 * 205.84319 * 17 15 13 38 38 H 0.97006 * 119.99896 * 180.02562 * 22 21 19 39 39 H 1.08998 * 110.40729 * 280.80071 * 27 18 17 40 40 H 1.09001 * 110.50420 * 158.41371 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3865 2.1381 -1.0778 5 1 2.3621 1.8292 -1.9971 6 7 2.7961 3.4068 -0.6526 7 6 2.6979 3.4690 0.6476 8 17 3.0923 4.8402 1.6363 9 6 2.2133 2.2234 1.1089 10 6 1.9508 1.8514 2.5106 11 8 0.8537 2.0482 2.9968 12 7 2.9268 1.2930 3.2537 13 6 2.6661 0.9237 4.6472 14 1 1.6236 0.9792 4.9605 15 6 3.7329 1.2829 5.6833 16 1 4.6097 1.8533 5.3764 17 6 3.2627 1.2941 7.1884 18 7 3.4382 -0.1036 7.6470 19 6 3.9094 -0.5377 8.8573 20 1 4.4356 0.1447 9.5082 21 6 3.7105 -1.8550 9.2474 22 7 2.9150 -2.6357 8.5475 23 14 4.5721 -2.5196 10.7658 24 1 5.4052 -1.4493 11.3704 25 1 3.5583 -2.9744 11.7510 26 1 5.4382 -3.6634 10.3828 27 6 2.9885 -0.9251 6.4991 28 6 3.5271 -0.1851 5.2557 29 1 4.2504 -0.7083 4.6302 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8021 1.1363 2.8661 36 1 2.2170 1.5914 7.2673 37 1 3.8947 1.9666 7.7684 38 1 2.7758 -3.5561 8.8204 39 1 1.9000 -0.9743 6.4703 40 1 3.4122 -1.9277 6.5579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960248848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:08 Heat of formation + Delta-G solvation = 66.400921 kcal Electronic energy + Delta-G solvation = -24640.015727 eV Core-core repulsion = 20904.117652 eV Total energy + Delta-G solvation = -3735.898074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72595 -40.85215 -39.50198 -37.98338 -36.04753 -35.18302 -34.31146 -32.70414 -31.94035 -30.50688 -28.76512 -27.58636 -25.42115 -24.18985 -23.06455 -22.78057 -21.94137 -20.92058 -20.75719 -19.04451 -18.79443 -17.72246 -17.59940 -16.73959 -16.47497 -16.28075 -15.95129 -15.63759 -15.31132 -15.01079 -14.87451 -14.60518 -14.48044 -13.76833 -13.74572 -13.32471 -13.20814 -13.12368 -12.92678 -12.85817 -12.72718 -12.38427 -12.23071 -12.07332 -11.95577 -11.88148 -11.80551 -11.65136 -11.20105 -10.84024 -10.67893 -10.60928 -9.96582 -9.70611 -8.89869 -7.90154 -5.26375 0.32588 0.39760 0.93846 1.37355 1.49155 1.49274 1.60638 1.74019 2.14685 2.50462 2.88401 3.30264 3.37270 3.60118 3.66581 3.81192 3.85455 3.97129 4.01929 4.11478 4.24399 4.34109 4.39077 4.51776 4.56675 4.74132 4.86494 4.92393 4.97179 5.01220 5.04638 5.30391 5.32592 5.44221 5.47200 5.56153 5.67686 5.92841 6.18831 6.19493 6.47745 7.02822 7.15600 7.69195 8.47883 9.23970 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002808 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.441731 B = 9968.175938 C =10881.189280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 C 0.172 3.828 4 N -0.423 5.423 5 H 0.467 0.533 6 N -0.290 5.290 7 C 0.149 3.851 8 Cl 0.017 6.983 9 C -0.295 4.295 10 C 0.607 3.393 11 O -0.566 6.566 12 N -0.672 5.672 13 C 0.116 3.884 14 H 0.109 0.891 15 C -0.169 4.169 16 H 0.138 0.862 17 C 0.149 3.851 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.061 4.061 22 N -0.946 5.946 23 Si 0.980 3.020 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.190 3.810 28 C -0.174 4.174 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.250 0.750 39 H -0.002 1.002 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 7.107 -24.315 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C 0.037 3.963 4 N -0.134 5.134 5 H 0.318 0.682 6 N -0.116 5.116 7 C -0.043 4.043 8 Cl 0.045 6.955 9 C -0.311 4.311 10 C 0.392 3.608 11 O -0.444 6.444 12 N -0.321 5.321 13 C 0.009 3.991 14 H 0.127 0.873 15 C -0.190 4.190 16 H 0.155 0.845 17 C 0.023 3.977 18 N -0.341 5.341 19 C -0.369 4.369 20 H 0.099 0.901 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.808 3.192 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.215 1.215 27 C 0.064 3.936 28 C -0.195 4.195 29 H 0.145 0.855 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.660 7.856 -24.759 25.984 hybrid contribution 0.349 -0.785 1.268 1.532 sum 1.010 7.071 -23.490 24.552 Atomic orbital electron populations 1.21762 0.93183 1.03714 1.02137 1.20601 0.97076 0.86250 1.06813 1.21750 0.93514 0.95772 0.85226 1.45845 1.49758 1.07985 1.09843 0.68231 1.77119 1.23859 1.00368 1.10220 1.22626 1.00523 0.90167 0.90977 1.98427 1.92148 1.39802 1.65132 1.19627 1.21873 0.95531 0.94039 1.17306 0.83365 0.75753 0.84359 1.90792 1.25225 1.54790 1.73616 1.45180 1.15314 1.61178 1.10396 1.21452 0.96669 1.00509 0.80445 0.87330 1.24996 1.01401 0.98934 0.93637 0.84477 1.21820 0.97263 0.86949 0.91644 1.45418 1.75046 1.01178 1.12427 1.19413 1.28150 0.95495 0.93878 0.90100 1.25730 1.00014 0.97772 1.01948 1.70097 1.39980 1.06984 1.42293 0.84993 0.77567 0.78094 0.78520 1.18970 1.22000 1.21548 1.20794 0.94402 0.95001 0.83360 1.24313 1.03534 0.91767 0.99892 0.85514 0.89600 0.94477 0.91261 0.85433 0.88716 0.74762 0.95970 0.92187 0.94066 0.98425 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.90 71.98 0.71 -1.17 16 2 C -0.07 -0.69 6.27 29.85 0.19 -0.51 16 3 C 0.17 2.62 6.55 42.16 0.28 2.90 16 4 N -0.42 -5.28 7.28 -46.79 -0.34 -5.62 16 5 H 0.47 1.83 8.96 -213.42 -1.91 -0.09 16 6 N -0.29 -5.84 12.64 -48.95 -0.62 -6.46 16 7 C 0.15 3.45 7.89 85.66 0.68 4.12 16 8 Cl 0.02 0.40 29.19 -2.72 -0.08 0.32 16 9 C -0.30 -6.69 5.88 -20.13 -0.12 -6.81 16 10 C 0.61 17.13 7.26 86.65 0.63 17.76 16 11 O -0.57 -20.96 16.67 -4.05 -0.07 -21.02 16 12 N -0.67 -17.11 5.56 -445.84 -2.48 -19.58 16 13 C 0.12 3.75 5.92 44.99 0.27 4.02 16 14 H 0.11 4.17 7.40 -2.39 -0.02 4.15 16 15 C -0.17 -5.67 7.34 -8.70 -0.06 -5.74 16 16 H 0.14 3.87 8.14 -2.38 -0.02 3.85 16 17 C 0.15 6.29 7.09 87.72 0.62 6.91 16 18 N -0.62 -31.90 3.38 -681.42 -2.30 -34.20 16 19 C -0.24 -13.47 10.35 84.03 0.87 -12.60 16 20 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 21 C -0.06 -3.43 5.40 84.86 0.46 -2.97 16 22 N -0.95 -56.38 10.88 21.65 0.24 -56.14 16 23 Si 0.98 45.14 29.56 68.60 2.03 47.17 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 27 C 0.19 9.25 5.69 86.54 0.49 9.75 16 28 C -0.17 -6.21 6.98 -9.88 -0.07 -6.28 16 29 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.42 8.13 8.81 -92.70 -0.82 7.31 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 39 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 3.25 6.53 -2.39 -0.02 3.23 16 Total: -1.00 -74.87 358.23 -0.32 -75.19 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -1.63 Total: 10.97 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 4.94 Total: 9.38 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -5.51 Total: -122.01 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.07 Total: -21.02 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -74.87 -0.32 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960248848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.590 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds