Wall clock time and date at job start Tue Mar 31 2020 14:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46927 * 2 1 4 4 N 1.35644 * 126.42988 * 265.02082 * 3 2 1 5 5 H 0.96995 * 124.93675 * 359.94883 * 4 3 2 6 6 N 1.28479 * 110.12610 * 179.97438 * 4 3 2 7 7 C 1.31826 * 110.13634 * 0.02562 * 6 4 3 8 8 C 1.47661 * 126.45793 * 180.02562 * 7 6 4 9 9 O 1.21577 * 120.00021 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00419 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00218 * 180.02562 * 10 8 7 12 12 H 1.08996 * 115.51889 * 350.41768 * 11 10 8 13 13 C 1.53005 * 117.44531 * 204.99847 * 11 10 8 14 14 H 1.09001 * 119.53461 * 5.72264 * 13 11 10 15 15 C 1.54384 * 118.12420 * 160.80958 * 13 11 10 16 16 N 1.48147 * 104.61574 * 87.19395 * 15 13 11 17 17 C 1.36935 * 127.83609 * 140.41229 * 16 15 13 18 18 H 1.07996 * 120.00102 * 195.57180 * 17 16 15 19 19 C 1.38821 * 120.00206 * 15.57724 * 17 16 15 20 20 N 1.31623 * 119.99499 * 9.09541 * 19 17 16 21 21 Si 1.86791 * 120.00025 * 189.10036 * 19 17 16 22 22 H 1.48495 * 109.47425 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47258 * 120.00147 * 21 19 17 24 24 H 1.48513 * 109.47097 * 239.99763 * 21 19 17 25 25 C 1.48142 * 104.32606 * 320.41429 * 16 15 13 26 26 C 1.53011 * 117.44069 * 135.76394 * 11 10 8 27 27 H 1.08999 * 119.53808 * 355.87676 * 26 11 10 28 28 C 1.35460 * 126.43640 * 84.72024 * 3 2 1 29 29 Cl 1.73604 * 127.23583 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47188 * 59.99860 * 1 2 3 32 32 H 1.09011 * 109.46952 * 300.00212 * 1 2 3 33 33 H 1.09000 * 109.46731 * 119.99875 * 2 1 3 34 34 H 1.09003 * 109.46610 * 239.99841 * 2 1 3 35 35 H 0.97002 * 119.99620 * 0.02562 * 10 8 7 36 36 H 1.08997 * 110.40933 * 205.98015 * 15 13 11 37 37 H 1.09003 * 110.40770 * 328.41266 * 15 13 11 38 38 H 0.97000 * 119.99165 * 179.97438 * 20 19 17 39 39 H 1.09002 * 110.40782 * 158.36511 * 25 16 15 40 40 H 1.08993 * 110.41063 * 280.80324 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3901 2.1487 -1.0873 5 1 2.3627 1.8297 -2.0028 6 7 2.7711 3.3219 -0.7280 7 6 2.6930 3.4430 0.5824 8 6 3.0414 4.6389 1.3754 9 8 2.9242 4.6213 2.5854 10 7 3.4894 5.7500 0.7580 11 6 3.8355 6.9362 1.5448 12 1 3.5527 6.9008 2.5968 13 6 3.7674 8.2934 0.8417 14 1 3.3800 8.3528 -0.1754 15 6 3.6792 9.5625 1.7163 16 7 5.0885 9.9137 2.0087 17 6 5.6515 11.1611 2.0530 18 1 6.7256 11.2700 2.0285 19 6 4.8415 12.2859 2.1295 20 7 3.5489 12.1530 2.3394 21 14 5.5859 13.9879 1.9343 22 1 7.0487 13.8657 1.7097 23 1 4.9617 14.6711 0.7729 24 1 5.3392 14.7804 3.1659 25 6 5.7504 8.6091 2.2424 26 6 5.1330 7.6648 1.1884 27 1 5.7874 7.2523 0.4205 28 6 2.2059 2.2128 1.0852 29 17 1.8993 1.8035 2.7442 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.5826 5.7642 -0.2075 36 1 3.1925 10.3690 1.1679 37 1 3.1407 9.3508 2.6401 38 1 2.9830 12.9390 2.3932 39 1 6.8263 8.6962 2.0907 40 1 5.5354 8.2485 3.2482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960313394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:15 Heat of formation + Delta-G solvation = 89.558160 kcal Electronic energy + Delta-G solvation = -24174.365270 eV Core-core repulsion = 20439.471368 eV Total energy + Delta-G solvation = -3734.893901 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.12168 -39.60200 -38.15582 -36.70117 -34.80226 -34.39974 -32.72858 -31.94370 -30.23929 -29.63673 -27.10778 -25.87687 -24.47997 -24.20537 -21.60441 -21.50500 -20.41158 -19.87401 -19.23771 -18.28115 -17.08881 -16.78123 -16.34372 -16.10907 -15.28441 -14.78681 -14.67657 -14.43232 -14.39539 -14.01065 -13.55224 -13.19678 -13.03062 -12.70562 -12.38033 -12.24739 -12.16000 -11.76448 -11.55168 -11.49755 -11.46324 -10.97071 -10.84867 -10.82708 -10.34789 -10.15989 -10.11406 -9.95564 -9.75652 -9.70384 -9.15050 -9.09663 -8.70319 -8.27897 -6.83380 -5.76926 -3.10893 1.19708 1.50094 1.77183 2.56756 3.09470 3.26329 3.40142 3.45949 3.48577 4.00619 4.15854 4.33888 4.37949 4.49930 4.69656 4.83656 4.92864 5.04659 5.21601 5.32925 5.41683 5.43092 5.47039 5.54967 5.62272 5.70248 5.87858 5.95884 6.19076 6.27584 6.42264 6.57847 6.74239 6.84650 6.95097 7.27456 7.39352 7.56941 7.65817 7.74933 8.23571 8.26858 9.13935 9.76595 10.53909 11.37583 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.002271 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.386622 B =12327.193387 C =12585.580448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.031 3.969 4 N -0.374 5.374 5 H 0.451 0.549 6 N -0.244 5.244 7 C 0.011 3.989 8 C 0.600 3.400 9 O -0.513 6.513 10 N -0.683 5.683 11 C 0.096 3.904 12 H 0.134 0.866 13 C -0.178 4.178 14 H 0.103 0.897 15 C 0.185 3.815 16 N -0.594 5.594 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.156 3.844 26 C -0.181 4.181 27 H 0.103 0.897 28 C -0.100 4.100 29 Cl -0.004 7.004 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.404 0.596 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.254 0.746 39 H 0.052 0.948 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 -27.160 -8.964 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.096 4.096 4 N -0.090 5.090 5 H 0.297 0.703 6 N -0.079 5.079 7 C -0.152 4.152 8 C 0.383 3.617 9 O -0.385 6.385 10 N -0.331 5.331 11 C -0.009 4.009 12 H 0.152 0.848 13 C -0.200 4.200 14 H 0.121 0.879 15 C 0.059 3.941 16 N -0.317 5.317 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.029 3.971 26 C -0.203 4.203 27 H 0.121 0.879 28 C -0.137 4.137 29 Cl 0.025 6.975 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.308 -26.289 -8.811 28.230 hybrid contribution 0.137 0.226 -0.524 0.587 sum -5.171 -26.063 -9.335 28.163 Atomic orbital electron populations 1.21782 0.93486 1.02636 1.02928 1.20190 0.96903 0.87834 1.04507 1.21194 1.05184 0.96867 0.86329 1.43193 1.47652 1.08440 1.09682 0.70314 1.73660 1.17726 1.02581 1.13955 1.21940 1.07400 0.96238 0.89572 1.16699 0.77671 0.80901 0.86465 1.90855 1.52802 1.82269 1.12593 1.45190 1.65257 1.12030 1.10637 1.21886 1.00191 0.82263 0.96601 0.84822 1.24653 1.00637 0.93345 1.01326 0.87856 1.21071 0.87059 0.90972 0.95017 1.45190 1.05622 1.00345 1.80536 1.19039 0.91456 0.80945 1.43880 0.90474 1.24912 0.95975 0.98069 1.01449 1.69913 1.03581 1.28306 1.54309 0.86035 0.78234 0.84072 0.77337 1.20380 1.21664 1.21698 1.21122 0.95913 0.86006 0.94057 1.24374 0.90651 1.01808 1.03456 0.87906 1.20497 1.10559 0.94331 0.88334 1.98370 1.94206 1.92835 1.12115 0.91354 0.92521 0.91615 0.88617 0.90051 0.76123 0.89045 0.95527 0.93600 0.92983 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.06 -0.25 6.36 -27.88 -0.18 -0.43 16 3 C 0.03 0.25 6.51 -81.90 -0.53 -0.29 16 4 N -0.37 -2.68 6.86 33.62 0.23 -2.45 16 5 H 0.45 1.37 8.96 -190.44 -1.71 -0.33 16 6 N -0.24 -2.62 11.91 33.42 0.40 -2.22 16 7 C 0.01 0.14 7.13 -82.76 -0.59 -0.44 16 8 C 0.60 9.56 7.82 -12.41 -0.10 9.47 16 9 O -0.51 -9.67 15.44 5.30 0.08 -9.59 16 10 N -0.68 -10.30 5.56 -54.80 -0.30 -10.61 16 11 C 0.10 1.70 5.98 -67.92 -0.41 1.29 16 12 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 13 C -0.18 -3.46 7.05 -89.22 -0.63 -4.08 16 14 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 15 C 0.18 4.52 5.70 -2.41 -0.01 4.51 16 16 N -0.59 -15.45 3.38 -168.86 -0.57 -16.02 16 17 C -0.23 -6.33 10.35 -15.06 -0.16 -6.48 16 18 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 19 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 20 N -0.91 -27.05 10.86 55.49 0.60 -26.45 16 21 Si 0.91 22.10 29.56 -169.99 -5.03 17.08 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.16 3.37 7.04 -2.41 -0.02 3.35 16 26 C -0.18 -3.35 7.06 -89.21 -0.63 -3.98 16 27 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 28 C -0.10 -1.16 6.79 -39.31 -0.27 -1.43 16 29 Cl 0.00 -0.05 28.02 -51.86 -1.45 -1.50 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.40 5.27 8.55 -40.82 -0.35 4.92 16 36 H 0.09 2.47 6.51 -51.93 -0.34 2.14 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -33.77 355.00 -10.48 -44.25 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.55 Total: 1.26 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.24 Total: 0.90 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.36 Total: -57.76 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.45 Total: -1.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.77 -10.48 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960313394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.813 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds