Wall clock time and date at job start Tue Mar 31 2020 14:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46927 * 2 1 4 4 N 1.35644 * 126.42988 * 265.02082 * 3 2 1 5 5 H 0.96995 * 124.93675 * 359.94883 * 4 3 2 6 6 N 1.28479 * 110.12610 * 179.97438 * 4 3 2 7 7 C 1.31826 * 110.13634 * 0.02562 * 6 4 3 8 8 C 1.47661 * 126.45793 * 180.02562 * 7 6 4 9 9 O 1.21577 * 120.00021 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00419 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00218 * 180.02562 * 10 8 7 12 12 H 1.08996 * 115.51889 * 350.41768 * 11 10 8 13 13 C 1.53005 * 117.44531 * 204.99847 * 11 10 8 14 14 H 1.09001 * 119.53461 * 5.72264 * 13 11 10 15 15 C 1.54384 * 118.12420 * 160.80958 * 13 11 10 16 16 N 1.48147 * 104.61574 * 87.19395 * 15 13 11 17 17 C 1.36935 * 127.83609 * 140.41229 * 16 15 13 18 18 H 1.07996 * 120.00102 * 195.57180 * 17 16 15 19 19 C 1.38821 * 120.00206 * 15.57724 * 17 16 15 20 20 N 1.31623 * 119.99499 * 9.09541 * 19 17 16 21 21 Si 1.86791 * 120.00025 * 189.10036 * 19 17 16 22 22 H 1.48495 * 109.47425 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47258 * 120.00147 * 21 19 17 24 24 H 1.48513 * 109.47097 * 239.99763 * 21 19 17 25 25 C 1.48142 * 104.32606 * 320.41429 * 16 15 13 26 26 C 1.53011 * 117.44069 * 135.76394 * 11 10 8 27 27 H 1.08999 * 119.53808 * 355.87676 * 26 11 10 28 28 C 1.35460 * 126.43640 * 84.72024 * 3 2 1 29 29 Cl 1.73604 * 127.23583 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47188 * 59.99860 * 1 2 3 32 32 H 1.09011 * 109.46952 * 300.00212 * 1 2 3 33 33 H 1.09000 * 109.46731 * 119.99875 * 2 1 3 34 34 H 1.09003 * 109.46610 * 239.99841 * 2 1 3 35 35 H 0.97002 * 119.99620 * 0.02562 * 10 8 7 36 36 H 1.08997 * 110.40933 * 205.98015 * 15 13 11 37 37 H 1.09003 * 110.40770 * 328.41266 * 15 13 11 38 38 H 0.97000 * 119.99165 * 179.97438 * 20 19 17 39 39 H 1.09002 * 110.40782 * 158.36511 * 25 16 15 40 40 H 1.08993 * 110.41063 * 280.80324 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3901 2.1487 -1.0873 5 1 2.3627 1.8297 -2.0028 6 7 2.7711 3.3219 -0.7280 7 6 2.6930 3.4430 0.5824 8 6 3.0414 4.6389 1.3754 9 8 2.9242 4.6213 2.5854 10 7 3.4894 5.7500 0.7580 11 6 3.8355 6.9362 1.5448 12 1 3.5527 6.9008 2.5968 13 6 3.7674 8.2934 0.8417 14 1 3.3800 8.3528 -0.1754 15 6 3.6792 9.5625 1.7163 16 7 5.0885 9.9137 2.0087 17 6 5.6515 11.1611 2.0530 18 1 6.7256 11.2700 2.0285 19 6 4.8415 12.2859 2.1295 20 7 3.5489 12.1530 2.3394 21 14 5.5859 13.9879 1.9343 22 1 7.0487 13.8657 1.7097 23 1 4.9617 14.6711 0.7729 24 1 5.3392 14.7804 3.1659 25 6 5.7504 8.6091 2.2424 26 6 5.1330 7.6648 1.1884 27 1 5.7874 7.2523 0.4205 28 6 2.2059 2.2128 1.0852 29 17 1.8993 1.8035 2.7442 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.5826 5.7642 -0.2075 36 1 3.1925 10.3690 1.1679 37 1 3.1407 9.3508 2.6401 38 1 2.9830 12.9390 2.3932 39 1 6.8263 8.6962 2.0907 40 1 5.5354 8.2485 3.2482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960313394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:14 Heat of formation + Delta-G solvation = 66.187474 kcal Electronic energy + Delta-G solvation = -24175.378698 eV Core-core repulsion = 20439.471368 eV Total energy + Delta-G solvation = -3735.907330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.89876 -41.03504 -39.67754 -37.55510 -36.10186 -35.29905 -34.35538 -32.96761 -31.97010 -30.33882 -28.93085 -27.73704 -25.67613 -24.74230 -23.26699 -22.23035 -21.94710 -21.17157 -20.88823 -18.99335 -18.85979 -18.12717 -17.54591 -17.13984 -16.72642 -15.93742 -15.78502 -15.65612 -15.47230 -15.18487 -14.89540 -14.63864 -14.54614 -13.78025 -13.49404 -13.35273 -13.24843 -13.08129 -12.93602 -12.86606 -12.74380 -12.28543 -12.11933 -12.02239 -11.99556 -11.87971 -11.74821 -11.67382 -11.20985 -10.85745 -10.70377 -10.57450 -9.87966 -9.72782 -8.92218 -7.91369 -5.28266 0.27358 0.71802 1.01228 1.47613 1.48282 1.59757 1.69738 2.06008 2.08716 2.48980 2.85870 3.19549 3.30481 3.47151 3.59875 3.75934 3.82825 3.91184 4.07412 4.14005 4.35860 4.37209 4.40427 4.50190 4.56615 4.79352 4.84646 4.89252 4.99476 5.05339 5.12614 5.27527 5.38579 5.39422 5.44513 5.51695 5.64526 5.87314 6.16757 6.34051 6.63147 7.00486 7.06233 7.67238 8.45916 9.22921 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.002271 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.386622 B =12327.193387 C =12585.580448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.057 3.943 4 N -0.348 5.348 5 H 0.472 0.528 6 N -0.242 5.242 7 C -0.018 4.018 8 C 0.598 3.402 9 O -0.550 6.550 10 N -0.671 5.671 11 C 0.116 3.884 12 H 0.112 0.888 13 C -0.177 4.177 14 H 0.126 0.874 15 C 0.189 3.811 16 N -0.617 5.617 17 C -0.239 4.239 18 H 0.084 0.916 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.149 3.851 26 C -0.163 4.163 27 H 0.134 0.866 28 C -0.128 4.128 29 Cl -0.018 7.018 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.417 0.583 36 H 0.060 0.940 37 H -0.003 1.003 38 H 0.250 0.750 39 H 0.065 0.935 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 -29.465 -11.549 32.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.070 4.070 4 N -0.068 5.068 5 H 0.322 0.678 6 N -0.079 5.079 7 C -0.179 4.179 8 C 0.383 3.617 9 O -0.425 6.425 10 N -0.321 5.321 11 C 0.010 3.990 12 H 0.129 0.871 13 C -0.198 4.198 14 H 0.144 0.856 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.258 4.258 20 N -0.596 5.596 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.216 1.216 24 H -0.220 1.220 25 C 0.024 3.976 26 C -0.184 4.184 27 H 0.152 0.848 28 C -0.166 4.166 29 Cl 0.011 6.989 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.015 0.985 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.560 -28.636 -11.449 31.176 hybrid contribution -0.125 0.813 0.269 0.866 sum -4.685 -27.823 -11.180 30.349 Atomic orbital electron populations 1.21783 0.93204 1.03633 1.02147 1.20401 0.96944 0.85618 1.06367 1.21622 1.02612 0.97691 0.85114 1.43324 1.45471 1.07235 1.10731 0.67758 1.73585 1.17682 1.04004 1.12635 1.21523 1.10059 0.95828 0.90485 1.17079 0.76699 0.81564 0.86311 1.90832 1.54279 1.83044 1.14356 1.44985 1.65094 1.10966 1.11026 1.21439 0.99382 0.82500 0.95725 0.87065 1.24337 1.02099 0.91934 1.01421 0.85631 1.20798 0.86286 0.92390 0.94213 1.45491 1.06384 1.01261 1.80961 1.19440 0.91980 0.82152 1.43181 0.89846 1.25796 0.96428 1.01924 1.01696 1.70113 1.04919 1.28964 1.55652 0.84950 0.78160 0.79038 0.76769 1.18738 1.21619 1.22000 1.21252 0.96681 0.84966 0.94739 1.24282 0.90521 1.00914 1.02713 0.84813 1.20709 1.12410 0.94780 0.88692 1.98358 1.94370 1.92821 1.13375 0.89521 0.92055 0.93675 0.88471 0.86495 0.74531 0.92149 0.98459 0.94087 0.91659 0.96131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 71.98 0.71 -0.18 16 2 C -0.05 -0.30 6.36 29.85 0.19 -0.11 16 3 C 0.06 0.75 6.51 41.33 0.27 1.02 16 4 N -0.35 -3.83 6.86 -47.55 -0.33 -4.16 16 5 H 0.47 0.85 8.96 -219.99 -1.97 -1.12 16 6 N -0.24 -4.62 11.91 -48.18 -0.57 -5.19 16 7 C -0.02 -0.46 7.13 42.45 0.30 -0.16 16 8 C 0.60 18.95 7.82 86.73 0.68 19.62 16 9 O -0.55 -21.24 15.44 -3.96 -0.06 -21.30 16 10 N -0.67 -19.55 5.56 -445.57 -2.48 -22.03 16 11 C 0.12 4.08 5.98 45.00 0.27 4.35 16 12 H 0.11 4.51 7.40 -2.39 -0.02 4.49 16 13 C -0.18 -6.80 7.05 -9.89 -0.07 -6.87 16 14 H 0.13 4.29 8.14 -2.39 -0.02 4.27 16 15 C 0.19 9.62 5.70 86.53 0.49 10.11 16 16 N -0.62 -32.75 3.38 -688.16 -2.33 -35.07 16 17 C -0.24 -13.60 10.35 84.04 0.87 -12.73 16 18 H 0.08 4.52 7.84 -2.91 -0.02 4.49 16 19 C -0.06 -3.74 5.40 84.86 0.46 -3.28 16 20 N -0.95 -58.06 10.86 21.65 0.24 -57.82 16 21 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 C 0.15 6.44 7.04 86.54 0.61 7.05 16 26 C -0.16 -5.80 7.06 -9.88 -0.07 -5.87 16 27 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 28 C -0.13 -2.84 6.79 22.44 0.15 -2.69 16 29 Cl -0.02 -0.43 28.02 -2.72 -0.08 -0.50 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.42 9.99 8.55 -92.71 -0.79 9.20 16 36 H 0.06 3.42 6.51 -2.39 -0.02 3.41 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -76.49 355.00 -0.38 -76.87 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -1.66 Total: 10.92 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.86 Total: 10.26 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -5.47 Total: -124.27 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.50 kcal Total: -76.49 -0.38 -76.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960313394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.053 kcal (2) G-P(sol) polarization free energy of solvation -76.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds