Wall clock time and date at job start Tue Mar 31 2020 13:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35458 * 126.43772 * 2 1 4 4 Cl 1.73601 * 127.23351 * 0.02562 * 3 2 1 5 5 C 1.41543 * 105.52539 * 180.02562 * 3 2 1 6 6 C 1.47673 * 126.46017 * 179.97438 * 5 3 2 7 7 O 1.21578 * 120.00040 * 0.02562 * 6 5 3 8 8 N 1.34772 * 119.99556 * 180.02562 * 6 5 3 9 9 C 1.46507 * 119.99560 * 179.97438 * 8 6 5 10 10 H 1.08993 * 115.51470 * 350.41940 * 9 8 6 11 11 C 1.52995 * 117.44202 * 204.99539 * 9 8 6 12 12 H 1.09001 * 119.53990 * 4.12435 * 11 9 8 13 13 C 1.54390 * 118.12337 * 159.21462 * 11 9 8 14 14 N 1.48140 * 104.61934 * 87.19276 * 13 11 9 15 15 C 1.36935 * 127.83993 * 140.41826 * 14 13 11 16 16 H 1.07995 * 119.99905 * 344.38758 * 15 14 13 17 17 C 1.38814 * 120.00261 * 164.38593 * 15 14 13 18 18 N 1.31620 * 119.99758 * 350.81878 * 17 15 14 19 19 Si 1.86803 * 120.00198 * 170.81056 * 17 15 14 20 20 H 1.48506 * 109.46541 * 94.81492 * 19 17 15 21 21 H 1.48492 * 109.47313 * 214.81587 * 19 17 15 22 22 H 1.48498 * 109.47067 * 334.81692 * 19 17 15 23 23 C 1.48153 * 104.32361 * 320.41591 * 14 13 11 24 24 C 1.52999 * 117.44207 * 135.75740 * 9 8 6 25 25 H 1.09010 * 119.54210 * 355.88323 * 24 9 8 26 26 N 1.31826 * 107.07939 * 359.76886 * 5 3 2 27 27 N 1.28475 * 110.13226 * 0.39173 * 26 5 3 28 28 C 1.46494 * 124.93217 * 179.86339 * 27 26 5 29 29 H 1.08997 * 109.46906 * 269.95767 * 1 2 3 30 30 H 1.08998 * 109.47047 * 29.95619 * 1 2 3 31 31 H 1.09001 * 109.47317 * 149.95733 * 1 2 3 32 32 H 0.96995 * 120.00639 * 359.97438 * 8 6 5 33 33 H 1.09004 * 110.41130 * 205.98135 * 13 11 9 34 34 H 1.09010 * 110.40592 * 328.28965 * 13 11 9 35 35 H 0.97005 * 119.99870 * 180.02562 * 18 17 15 36 36 H 1.08999 * 110.40709 * 158.36837 * 23 14 13 37 37 H 1.08999 * 110.40872 * 280.80257 * 23 14 13 38 38 H 1.09003 * 109.47160 * 269.69874 * 28 27 26 39 39 H 1.08995 * 109.47555 * 29.69422 * 28 27 26 40 40 H 1.09001 * 109.47227 * 149.69863 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8235 2.7557 0.0006 5 6 3.6337 0.5845 -0.0006 6 6 4.8774 1.3808 -0.0014 7 8 4.8217 2.5953 -0.0011 8 7 6.0742 0.7610 -0.0024 9 6 7.3081 1.5509 -0.0038 10 1 7.1804 2.6209 -0.1675 11 6 8.5649 0.8946 -0.5786 12 1 8.4966 -0.0971 -1.0259 13 6 9.7172 1.8112 -1.0428 14 7 10.5304 2.0354 0.1750 15 6 11.8951 2.0865 0.2761 16 1 12.5106 1.7121 -0.5284 17 6 12.4873 2.6197 1.4127 18 7 11.7499 3.2383 2.3105 19 14 14.3308 2.4592 1.6682 20 1 15.0082 3.6825 1.1679 21 1 14.6173 2.2915 3.1155 22 1 14.8325 1.2761 0.9240 23 6 9.5323 2.1917 1.2586 24 6 8.4273 1.1120 0.9426 25 1 8.2566 0.2823 1.6286 26 7 3.5456 -0.7308 0.0042 27 7 2.3125 -1.0914 -0.0006 28 6 1.8445 -2.4795 -0.0003 29 1 -0.3633 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5145 32 1 6.1187 -0.2079 -0.0023 33 1 10.3113 1.3158 -1.8108 34 1 9.3237 2.7559 -1.4185 35 1 12.1638 3.6112 3.1046 36 1 9.9870 1.9832 2.2271 37 1 9.1100 3.1965 1.2444 38 1 1.7278 -2.8238 -1.0279 39 1 2.5720 -3.1082 0.5129 40 1 0.8854 -2.5395 0.5141 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961919169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:49 Heat of formation + Delta-G solvation = 80.337969 kcal Electronic energy + Delta-G solvation = -24289.191868 eV Core-core repulsion = 20553.898149 eV Total energy + Delta-G solvation = -3735.293719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.84836 -40.99043 -39.62104 -37.54842 -36.10472 -34.81435 -34.13021 -33.50503 -32.10759 -28.78850 -28.69402 -28.10240 -27.39827 -24.77766 -23.13432 -22.17003 -21.97302 -20.98751 -20.75474 -18.86024 -18.47532 -17.70302 -17.61460 -17.46059 -16.72168 -15.89692 -15.81152 -15.66033 -15.36883 -14.89478 -14.63779 -14.52473 -14.19350 -13.80149 -13.61373 -13.61069 -13.35866 -13.19205 -13.14865 -12.86260 -12.82633 -12.72097 -12.49128 -12.08856 -12.03635 -11.89098 -11.78373 -11.69717 -11.20569 -10.82265 -10.74107 -10.27871 -9.81680 -9.69505 -8.92664 -7.91377 -5.28734 0.29855 0.74355 0.92155 1.47128 1.48892 1.59146 1.60447 1.94072 2.10206 2.48826 2.86984 3.19373 3.29640 3.50112 3.59596 3.74033 3.84552 3.92182 4.08007 4.10115 4.34325 4.35174 4.38591 4.41616 4.64277 4.67949 4.73250 4.80381 4.86509 4.89882 4.99160 5.07600 5.26375 5.38871 5.43384 5.50955 5.63301 5.65533 6.16154 6.32859 6.67211 6.99665 7.06895 7.66968 8.45876 9.22697 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027414 B = 0.002407 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.127014 B =11627.974987 C =12186.510289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.044 3.956 3 C -0.135 4.135 4 Cl -0.021 7.021 5 C -0.027 4.027 6 C 0.599 3.401 7 O -0.552 6.552 8 N -0.672 5.672 9 C 0.113 3.887 10 H 0.110 0.890 11 C -0.159 4.159 12 H 0.137 0.863 13 C 0.149 3.851 14 N -0.616 5.616 15 C -0.240 4.240 16 H 0.085 0.915 17 C -0.065 4.065 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.191 3.809 24 C -0.184 4.184 25 H 0.125 0.875 26 N -0.252 5.252 27 N -0.266 5.266 28 C 0.071 3.929 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.417 0.583 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.000 1.000 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.299 -15.757 -5.686 32.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.173 4.173 4 Cl 0.008 6.992 5 C -0.186 4.186 6 C 0.384 3.616 7 O -0.428 6.428 8 N -0.321 5.321 9 C 0.006 3.994 10 H 0.128 0.872 11 C -0.179 4.179 12 H 0.155 0.845 13 C 0.024 3.976 14 N -0.340 5.340 15 C -0.369 4.369 16 H 0.103 0.897 17 C -0.259 4.259 18 N -0.597 5.597 19 Si 0.811 3.189 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.189 1.189 23 C 0.065 3.935 24 C -0.205 4.205 25 H 0.143 0.857 26 N -0.089 5.089 27 N -0.056 5.056 28 C -0.066 4.066 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.254 0.746 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.018 0.982 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.553 -15.796 -5.567 32.244 hybrid contribution 0.820 0.918 0.442 1.308 sum -26.733 -14.878 -5.125 31.021 Atomic orbital electron populations 1.20637 0.82377 1.06018 1.05347 1.21692 0.97145 0.84562 1.04858 1.20778 0.92234 0.88256 1.15992 1.98347 1.90715 1.12883 1.97258 1.21508 0.93658 0.90358 1.13062 1.17095 0.82170 0.86349 0.75974 1.90824 1.86956 1.14152 1.50850 1.44994 1.03375 1.10513 1.73255 1.21482 0.79472 0.95505 1.02907 0.87171 1.24181 0.95155 1.01717 0.96895 0.84509 1.21281 0.90776 0.95674 0.89908 1.45410 1.01407 1.83837 1.03311 1.19417 0.80841 1.33095 1.03539 0.89714 1.25817 1.02788 0.98990 0.98271 1.70116 1.35929 1.41411 1.12242 0.84996 0.79093 0.78039 0.76744 1.21305 1.21926 1.18924 1.21355 0.86679 0.92123 0.93339 1.25138 0.98444 1.02923 0.94005 0.85708 1.73558 1.03746 1.12490 1.19109 1.45878 1.01593 1.09235 1.48886 1.22806 1.03541 0.73451 1.06824 0.88089 0.89307 0.87204 0.74611 0.91409 0.96062 0.94091 0.92510 0.98230 0.87248 0.87405 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 9.75 71.24 0.69 0.22 16 2 C 0.04 0.67 6.94 41.33 0.29 0.96 16 3 C -0.14 -3.32 6.79 22.44 0.15 -3.16 16 4 Cl -0.02 -0.53 27.92 -2.72 -0.08 -0.61 16 5 C -0.03 -0.74 7.13 42.45 0.30 -0.44 16 6 C 0.60 20.22 7.82 86.74 0.68 20.90 16 7 O -0.55 -22.55 15.44 -3.96 -0.06 -22.61 16 8 N -0.67 -20.58 5.56 -445.58 -2.48 -23.06 16 9 C 0.11 4.08 5.92 44.99 0.27 4.35 16 10 H 0.11 4.61 7.40 -2.39 -0.02 4.59 16 11 C -0.16 -5.65 6.98 -9.89 -0.07 -5.72 16 12 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 13 C 0.15 6.41 7.04 86.54 0.61 7.02 16 14 N -0.62 -32.88 3.38 -681.41 -2.30 -35.19 16 15 C -0.24 -13.73 10.35 84.03 0.87 -12.86 16 16 H 0.09 4.57 7.84 -2.91 -0.02 4.55 16 17 C -0.07 -3.78 5.40 84.86 0.46 -3.32 16 18 N -0.95 -58.71 10.87 21.65 0.24 -58.48 16 19 Si 0.98 46.19 29.56 68.60 2.03 48.22 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.19 9.95 5.76 87.72 0.51 10.45 16 24 C -0.18 -7.29 7.34 -8.70 -0.06 -7.35 16 25 H 0.13 4.48 8.14 -2.38 -0.02 4.46 16 26 N -0.25 -5.53 11.66 -48.17 -0.56 -6.10 16 27 N -0.27 -3.80 3.72 -355.40 -1.32 -5.12 16 28 C 0.07 0.16 10.94 127.77 1.40 1.56 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.60 8.03 -2.39 -0.02 0.58 16 31 H 0.11 -0.10 7.68 -2.39 -0.02 -0.12 16 32 H 0.42 10.53 8.55 -92.71 -0.79 9.74 16 33 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 36 H 0.06 3.29 6.52 -2.39 -0.02 3.27 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.13 -0.54 7.58 -2.39 -0.02 -0.56 16 Total: -1.00 -80.19 354.63 1.84 -78.35 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.29 Total: 11.99 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.09 Total: 12.60 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -6.43 Total: -127.94 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.61 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -80.19 1.84 -78.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961919169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.689 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds