Wall clock time and date at job start Tue Mar 31 2020 13:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46507 * 113.58087 * 139.33714 * 15 14 12 17 17 C 1.34770 * 120.00087 * 107.27905 * 16 15 14 18 18 O 1.21739 * 119.99735 * 0.02562 * 17 16 15 19 19 C 1.46288 * 120.00132 * 180.02562 * 17 16 15 20 20 S 1.75824 * 125.46304 * 0.02562 * 19 17 16 21 21 C 1.70602 * 91.60870 * 179.97438 * 20 19 17 22 22 C 1.33729 * 111.03599 * 0.02562 * 21 20 19 23 23 C 1.36924 * 125.46950 * 179.71550 * 19 17 16 24 24 F 1.35102 * 123.40491 * 0.02562 * 23 19 17 25 25 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 26 26 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 28 28 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 29 29 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 30 30 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 31 31 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 32 32 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 33 33 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 34 34 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 35 35 H 1.09000 * 113.58140 * 270.13184 * 15 14 12 36 36 H 0.97003 * 119.99555 * 287.27687 * 16 15 14 37 37 H 1.07996 * 124.47564 * 179.97438 * 21 20 19 38 38 H 1.08000 * 122.44857 * 180.02562 * 22 21 20 39 39 H 1.08999 * 113.66373 * 265.09616 * 25 12 11 40 40 H 1.09000 * 113.66011 * 36.14689 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 8.4673 -5.4945 -1.1293 17 6 8.6954 -6.6480 -1.7878 18 8 7.8967 -7.0436 -2.6171 19 6 9.9026 -7.4247 -1.5061 20 16 11.1466 -6.9903 -0.3420 21 6 12.0485 -8.3906 -0.7108 22 6 11.4376 -9.1217 -1.6493 23 6 10.2422 -8.6096 -2.1023 24 9 9.4833 -9.2132 -3.0432 25 6 7.4011 -3.2179 -1.0907 26 1 -0.4849 0.8400 0.0004 27 1 3.8647 -0.3622 0.0007 28 1 3.5285 -3.2969 0.4087 29 1 5.6183 -2.8078 1.5906 30 1 5.9537 -1.3631 0.5416 31 1 4.9997 -1.9148 -1.9492 32 1 4.2805 -3.5832 -1.9056 33 1 6.6294 -5.0062 0.6928 34 1 5.3450 -5.4022 -0.5302 35 1 6.8489 -4.9138 -2.4020 36 1 9.1038 -5.1790 -0.4688 37 1 12.9888 -8.6516 -0.2482 38 1 11.8490 -10.0486 -2.0208 39 1 7.4912 -2.5880 -1.9757 40 1 8.1579 -3.0020 -0.3365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963764001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:27 Heat of formation + Delta-G solvation = 13.740665 kcal Electronic energy + Delta-G solvation = -23921.017958 eV Core-core repulsion = 20164.960109 eV Total energy + Delta-G solvation = -3756.057850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.22208 -40.69075 -39.38588 -37.76411 -36.00639 -33.79885 -32.34090 -30.50701 -29.86568 -25.86718 -25.70265 -25.31318 -24.17794 -22.82816 -21.27879 -20.45037 -20.04357 -19.19450 -17.94469 -17.40720 -17.27890 -16.55096 -16.27321 -15.85269 -15.39458 -15.05916 -14.87003 -14.79375 -14.56301 -14.04691 -13.99487 -13.60934 -13.04355 -12.74734 -12.67105 -12.63055 -12.39910 -12.08546 -11.78268 -11.73775 -11.64402 -11.36552 -11.00745 -10.81438 -10.38512 -10.22332 -10.03795 -9.82729 -9.71842 -9.57911 -9.48302 -9.17906 -9.03524 -8.87590 -7.25089 -5.76739 -3.12021 -0.17479 0.74407 1.15309 1.64423 2.78541 2.80164 3.37190 3.39952 3.45189 3.75863 4.30085 4.38028 4.49333 4.56038 4.58997 4.69267 4.69952 4.80280 5.10049 5.22854 5.24456 5.38921 5.49981 5.60470 5.63068 5.73646 5.77626 5.80633 5.83591 5.95023 6.07156 6.14403 6.22637 6.28914 6.40795 6.57079 6.79239 7.00421 7.16567 7.86768 8.00578 8.43224 9.21197 9.93795 10.13885 11.41614 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.002135 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.604778 B =13111.089131 C =13564.340033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.174 3.826 11 C -0.138 4.138 12 C -0.102 4.102 13 C -0.142 4.142 14 C -0.125 4.125 15 C 0.124 3.876 16 N -0.713 5.713 17 C 0.590 3.410 18 O -0.518 6.518 19 C -0.317 4.317 20 S 0.253 5.747 21 C -0.208 4.208 22 C -0.178 4.178 23 C 0.164 3.836 24 F -0.102 7.102 25 C -0.130 4.130 26 H 0.259 0.741 27 H 0.362 0.638 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.396 0.604 37 H 0.181 0.819 38 H 0.160 0.840 39 H 0.075 0.925 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.157 -16.180 0.586 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.177 4.177 12 C -0.103 4.103 13 C -0.183 4.183 14 C -0.163 4.163 15 C 0.020 3.980 16 N -0.363 5.363 17 C 0.375 3.625 18 O -0.395 6.395 19 C -0.438 4.438 20 S 0.519 5.481 21 C -0.346 4.346 22 C -0.210 4.210 23 C 0.129 3.871 24 F -0.080 7.080 25 C -0.169 4.169 26 H 0.069 0.931 27 H 0.195 0.805 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.230 0.770 37 H 0.199 0.801 38 H 0.177 0.823 39 H 0.094 0.906 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 29.458 -15.313 0.960 33.214 hybrid contribution 0.755 -0.075 -0.841 1.133 sum 30.213 -15.388 0.119 33.907 Atomic orbital electron populations 1.69704 1.05115 1.25819 1.57464 1.24708 0.95270 0.97259 1.02035 0.86539 0.79182 0.84981 0.77769 1.21085 1.21753 1.20332 1.19157 0.80734 0.94765 1.42964 0.89134 1.42768 1.04068 1.02048 1.88849 1.21521 0.89504 0.89824 0.92837 1.23289 0.98946 0.98671 0.96822 1.22085 0.93921 0.94879 0.99406 1.23577 0.94692 1.00397 0.99604 1.23160 0.98924 0.95700 0.98533 1.22701 0.84286 0.90473 1.00507 1.45895 1.25153 1.22884 1.42386 1.16699 0.83741 0.80739 0.81302 1.90909 1.46088 1.69125 1.33370 1.24729 1.04917 1.03375 1.10801 1.83081 1.09881 1.20291 1.34842 1.25121 1.06004 1.00458 1.02974 1.19887 0.95388 1.04318 1.01424 1.16929 0.90246 0.90595 0.89330 1.91599 1.74104 1.81621 1.60697 1.23194 0.97758 0.94635 1.01280 0.93065 0.80513 0.89920 0.91890 0.90409 0.90164 0.91968 0.89736 0.90543 0.86401 0.76968 0.80147 0.82295 0.90618 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.08 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.95 10.45 -15.05 -0.16 -7.11 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.74 -17.34 5.20 -52.47 -0.27 -17.61 16 10 C 0.17 3.28 4.48 -66.95 -0.30 2.98 16 11 C -0.14 -2.05 7.59 -26.28 -0.20 -2.25 16 12 C -0.10 -1.32 1.11 -154.71 -0.17 -1.49 16 13 C -0.14 -2.31 7.64 -26.28 -0.20 -2.51 16 14 C -0.12 -1.47 7.64 -26.28 -0.20 -1.67 16 15 C 0.12 1.41 4.24 -66.95 -0.28 1.12 16 16 N -0.71 -7.05 5.35 -54.28 -0.29 -7.34 16 17 C 0.59 7.27 7.77 -13.03 -0.10 7.17 16 18 O -0.52 -8.61 15.74 5.15 0.08 -8.53 16 19 C -0.32 -3.05 6.45 -36.82 -0.24 -3.29 16 20 S 0.25 1.27 22.14 -107.50 -2.38 -1.11 16 21 C -0.21 -0.88 10.91 29.15 0.32 -0.56 16 22 C -0.18 -1.11 10.15 -41.35 -0.42 -1.53 16 23 C 0.16 1.62 7.48 -40.25 -0.30 1.32 16 24 F -0.10 -1.28 16.43 2.25 0.04 -1.24 16 25 C -0.13 -1.38 7.59 -26.29 -0.20 -1.57 16 26 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 27 H 0.36 8.32 5.78 -40.82 -0.24 8.09 16 28 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 31 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.12 1.57 7.47 -51.93 -0.39 1.18 16 36 H 0.40 2.78 7.83 -40.82 -0.32 2.46 16 37 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 38 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -34.65 353.05 -9.18 -43.83 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.18 Total: 7.40 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.55 Total: -9.42 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.21 Total: -53.62 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.38 Total: -1.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.65 -9.18 -43.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963764001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.571 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds