Wall clock time and date at job start Tue Mar 31 2020 13:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46507 * 113.58087 * 139.33714 * 15 14 12 17 17 C 1.34770 * 120.00087 * 107.27905 * 16 15 14 18 18 O 1.21739 * 119.99735 * 0.02562 * 17 16 15 19 19 C 1.46288 * 120.00132 * 180.02562 * 17 16 15 20 20 S 1.75824 * 125.46304 * 0.02562 * 19 17 16 21 21 C 1.70602 * 91.60870 * 179.97438 * 20 19 17 22 22 C 1.33729 * 111.03599 * 0.02562 * 21 20 19 23 23 C 1.36924 * 125.46950 * 179.71550 * 19 17 16 24 24 F 1.35102 * 123.40491 * 0.02562 * 23 19 17 25 25 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 26 26 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 28 28 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 29 29 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 30 30 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 31 31 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 32 32 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 33 33 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 34 34 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 35 35 H 1.09000 * 113.58140 * 270.13184 * 15 14 12 36 36 H 0.97003 * 119.99555 * 287.27687 * 16 15 14 37 37 H 1.07996 * 124.47564 * 179.97438 * 21 20 19 38 38 H 1.08000 * 122.44857 * 180.02562 * 22 21 20 39 39 H 1.08999 * 113.66373 * 265.09616 * 25 12 11 40 40 H 1.09000 * 113.66011 * 36.14689 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 8.4673 -5.4945 -1.1293 17 6 8.6954 -6.6480 -1.7878 18 8 7.8967 -7.0436 -2.6171 19 6 9.9026 -7.4247 -1.5061 20 16 11.1466 -6.9903 -0.3420 21 6 12.0485 -8.3906 -0.7108 22 6 11.4376 -9.1217 -1.6493 23 6 10.2422 -8.6096 -2.1023 24 9 9.4833 -9.2132 -3.0432 25 6 7.4011 -3.2179 -1.0907 26 1 -0.4849 0.8400 0.0004 27 1 3.8647 -0.3622 0.0007 28 1 3.5285 -3.2969 0.4087 29 1 5.6183 -2.8078 1.5906 30 1 5.9537 -1.3631 0.5416 31 1 4.9997 -1.9148 -1.9492 32 1 4.2805 -3.5832 -1.9056 33 1 6.6294 -5.0062 0.6928 34 1 5.3450 -5.4022 -0.5302 35 1 6.8489 -4.9138 -2.4020 36 1 9.1038 -5.1790 -0.4688 37 1 12.9888 -8.6516 -0.2482 38 1 11.8490 -10.0486 -2.0208 39 1 7.4912 -2.5880 -1.9757 40 1 8.1579 -3.0020 -0.3365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963764001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:27 Heat of formation + Delta-G solvation = -10.207232 kcal Electronic energy + Delta-G solvation = -23922.056417 eV Core-core repulsion = 20164.960109 eV Total energy + Delta-G solvation = -3757.096309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.00759 -41.74408 -40.39249 -38.34077 -37.32639 -35.34633 -33.84679 -32.14868 -30.72091 -26.79819 -26.60764 -26.47781 -25.74023 -23.97334 -22.34229 -21.70647 -20.81671 -20.04225 -19.60109 -18.66441 -18.09764 -17.41264 -17.06926 -16.93491 -16.61381 -16.23633 -15.88605 -15.73851 -15.62440 -15.20856 -14.97166 -14.75713 -14.62776 -14.01144 -13.69330 -13.55186 -13.39001 -13.26463 -13.05882 -12.95184 -12.90937 -12.44091 -12.35969 -12.18305 -12.01904 -11.84664 -11.46939 -11.16191 -11.08471 -10.90415 -10.78078 -10.29146 -9.92720 -9.49565 -9.26550 -8.02174 -5.35212 -0.74640 0.25746 0.71419 1.11362 1.37713 1.42500 1.49781 1.93411 1.99141 2.49213 3.23634 3.27597 3.44001 3.48300 3.58330 3.68308 3.78149 3.86488 3.92145 4.08638 4.27691 4.34235 4.45494 4.58741 4.70347 4.77353 4.79857 4.84530 4.93075 4.98715 5.02343 5.06215 5.09806 5.17298 5.23086 5.46111 5.54540 5.61557 5.78667 6.23372 6.36629 7.03945 7.08615 7.86052 8.05991 9.19644 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.002135 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.604778 B =13111.089131 C =13564.340033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.070 4.070 3 Si 0.960 3.040 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.234 4.234 8 H 0.052 0.948 9 N -0.742 5.742 10 C 0.148 3.852 11 C -0.119 4.119 12 C -0.090 4.090 13 C -0.142 4.142 14 C -0.123 4.123 15 C 0.124 3.876 16 N -0.696 5.696 17 C 0.584 3.416 18 O -0.577 6.577 19 C -0.360 4.360 20 S 0.329 5.671 21 C -0.185 4.185 22 C -0.194 4.194 23 C 0.138 3.862 24 F -0.130 7.130 25 C -0.111 4.111 26 H 0.257 0.743 27 H 0.368 0.632 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.222 0.778 38 H 0.176 0.824 39 H 0.079 0.921 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.387 -15.353 2.530 38.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.261 4.261 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.365 4.365 8 H 0.070 0.930 9 N -0.383 5.383 10 C 0.039 3.961 11 C -0.157 4.157 12 C -0.092 4.092 13 C -0.182 4.182 14 C -0.161 4.161 15 C 0.019 3.981 16 N -0.347 5.347 17 C 0.372 3.628 18 O -0.458 6.458 19 C -0.481 4.481 20 S 0.595 5.405 21 C -0.323 4.323 22 C -0.224 4.224 23 C 0.102 3.898 24 F -0.109 7.109 25 C -0.149 4.149 26 H 0.066 0.934 27 H 0.202 0.798 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.251 0.749 37 H 0.239 0.761 38 H 0.194 0.806 39 H 0.097 0.903 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 34.783 -14.505 2.939 37.800 hybrid contribution -0.835 -0.473 -1.397 1.695 sum 33.947 -14.978 1.542 37.137 Atomic orbital electron populations 1.69904 1.07293 1.26699 1.59816 1.25609 0.96221 1.01589 1.02723 0.85327 0.78758 0.79138 0.78055 1.20582 1.22320 1.17050 1.19108 0.83017 0.93303 1.41111 0.93028 1.42733 1.02280 1.03991 1.89295 1.21896 0.91232 0.87601 0.95396 1.23132 0.94853 0.99782 0.97956 1.21867 0.94452 0.95313 0.97537 1.23440 0.96256 1.00158 0.98351 1.23215 0.98565 0.94476 0.99872 1.22480 0.84807 0.91668 0.99102 1.45686 1.24846 1.21986 1.42199 1.17144 0.84096 0.81033 0.80489 1.90871 1.48375 1.70609 1.35976 1.24710 1.05944 1.03748 1.13696 1.82763 1.06817 1.19439 1.31460 1.25690 1.06539 0.99112 1.00964 1.20001 0.94367 1.05591 1.02450 1.17586 0.91488 0.91297 0.89466 1.91515 1.75149 1.82209 1.62009 1.23161 0.96287 0.93357 1.02084 0.93396 0.79850 0.91750 0.90220 0.89336 0.90344 0.93296 0.87362 0.92529 0.89102 0.74878 0.76097 0.80631 0.90251 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.47 13.97 21.66 0.30 -64.17 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.96 45.65 27.74 68.60 1.90 47.55 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 7 C -0.23 -13.63 10.45 84.04 0.88 -12.75 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.74 -34.66 5.20 -319.92 -1.67 -36.33 16 10 C 0.15 5.53 4.48 45.63 0.20 5.74 16 11 C -0.12 -3.17 7.59 30.89 0.23 -2.93 16 12 C -0.09 -2.16 1.11 -52.31 -0.06 -2.22 16 13 C -0.14 -4.60 7.64 30.88 0.24 -4.36 16 14 C -0.12 -2.73 7.64 30.88 0.24 -2.49 16 15 C 0.12 2.66 4.24 45.63 0.19 2.85 16 16 N -0.70 -12.56 5.35 -443.83 -2.37 -14.94 16 17 C 0.58 14.48 7.77 86.34 0.67 15.15 16 18 O -0.58 -20.43 15.74 -4.47 -0.07 -20.50 16 19 C -0.36 -6.60 6.45 24.06 0.16 -6.44 16 20 S 0.33 2.02 22.14 -56.49 -1.25 0.77 16 21 C -0.18 -0.77 10.91 66.80 0.73 -0.04 16 22 C -0.19 -2.00 10.15 21.12 0.21 -1.79 16 23 C 0.14 2.71 7.48 21.84 0.16 2.88 16 24 F -0.13 -3.53 16.43 44.97 0.74 -2.79 16 25 C -0.11 -1.95 7.59 30.88 0.23 -1.72 16 26 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.37 16.18 5.78 -92.71 -0.54 15.64 16 28 H 0.06 2.61 8.10 -2.39 -0.02 2.59 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.24 8.12 -2.39 -0.02 2.22 16 31 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 2.50 7.47 -2.39 -0.02 2.48 16 36 H 0.41 4.32 7.83 -92.71 -0.73 3.60 16 37 H 0.22 -0.89 8.06 -2.91 -0.02 -0.92 16 38 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.12 1.36 8.12 -2.39 -0.02 1.34 16 Total: -1.00 -82.32 353.05 1.91 -80.41 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.23 Total: 21.87 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.56 Total: -11.87 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -3.74 Total: -115.44 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.07 Total: -20.50 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.74 Total: -2.79 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.25 Total: 0.77 kcal Total: -82.32 1.91 -80.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963764001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.201 kcal (2) G-P(sol) polarization free energy of solvation -82.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds