Wall clock time and date at job start Tue Mar 31 2020 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55160 * 111.00678 * 198.64617 * 10 9 7 13 13 C 1.54317 * 102.94328 * 206.42332 * 12 10 9 14 14 N 1.47018 * 107.27559 * 22.19141 * 13 12 10 15 15 C 1.34774 * 125.65075 * 181.02260 * 14 13 12 16 16 O 1.21607 * 119.99961 * 180.02562 * 15 14 13 17 17 C 1.47380 * 119.99897 * 0.04444 * 15 14 13 18 18 C 1.41393 * 126.42261 * 270.01777 * 17 15 14 19 19 Cl 1.73596 * 126.00309 * 359.96999 * 18 17 15 20 20 N 1.30534 * 107.99204 * 179.97438 * 18 17 15 21 21 N 1.39928 * 108.89091 * 0.02562 * 20 18 17 22 22 H 0.97005 * 125.73681 * 179.97438 * 21 20 18 23 23 C 1.34236 * 108.52759 * 359.76513 * 21 20 18 24 24 C 1.50698 * 126.28191 * 180.23375 * 23 21 20 25 25 C 1.53001 * 117.50297 * 8.90837 * 24 23 21 26 26 C 1.53000 * 117.49847 * 300.24720 * 24 23 21 27 27 C 1.47429 * 108.70189 * 1.05641 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09002 * 110.71833 * 324.78918 * 12 10 9 31 31 H 1.09000 * 110.72096 * 88.05277 * 12 10 9 32 32 H 1.09003 * 109.88379 * 262.77417 * 13 12 10 33 33 H 1.09007 * 110.01154 * 141.68197 * 13 12 10 34 34 H 1.09001 * 115.55259 * 154.58488 * 24 23 21 35 35 H 1.09006 * 117.49483 * 0.02562 * 25 24 23 36 36 H 1.08998 * 117.49877 * 145.01803 * 25 24 23 37 37 H 1.09001 * 117.50412 * 214.98234 * 26 24 23 38 38 H 1.08999 * 117.49582 * 0.02562 * 26 24 23 39 39 H 1.08995 * 110.36765 * 217.02980 * 27 14 13 40 40 H 1.09005 * 110.36395 * 94.71183 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 1.1478 -4.8245 -0.4659 13 6 1.7840 -6.0521 0.2193 14 7 2.5581 -5.5587 1.3677 15 6 3.2809 -6.3198 2.2131 16 8 3.8840 -5.8017 3.1333 17 6 3.3408 -7.7800 2.0221 18 6 2.4621 -8.7365 2.5809 19 17 1.1135 -8.3987 3.6205 20 7 2.8432 -9.9181 2.1778 21 7 3.9663 -9.7758 1.3554 22 1 4.4480 -10.4990 0.9241 23 6 4.2625 -8.4700 1.2601 24 6 5.3949 -7.8679 0.4687 25 6 6.1726 -8.7940 -0.4685 26 6 6.8173 -8.3009 0.8294 27 6 2.4121 -4.0936 1.4418 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 0.1247 -4.6769 -0.1202 31 1 1.1781 -4.9293 -1.5505 32 1 2.4441 -6.5661 -0.4794 33 1 1.0050 -6.7331 0.5624 34 1 5.2487 -6.8360 0.1494 35 1 5.8649 -9.8388 -0.5130 36 1 6.5383 -8.3713 -1.4043 37 1 7.6070 -7.5541 0.7469 38 1 6.9340 -9.0216 1.6387 39 1 3.3488 -3.6346 1.7581 40 1 1.6075 -3.8267 2.1271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968887242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:21 Heat of formation + Delta-G solvation = 79.656143 kcal Electronic energy + Delta-G solvation = -25098.594259 eV Core-core repulsion = 21363.270974 eV Total energy + Delta-G solvation = -3735.323285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94459 -39.45302 -37.67259 -37.22074 -36.93350 -34.40622 -32.01352 -31.51755 -30.66214 -29.52372 -27.40807 -24.75180 -23.84469 -23.01739 -22.83977 -21.91604 -21.43732 -20.26837 -19.06336 -18.00880 -17.46491 -16.72836 -16.31205 -15.89084 -15.53927 -15.34778 -15.11123 -14.53753 -14.33384 -13.89000 -13.68296 -13.23643 -13.00260 -12.84438 -12.53486 -12.46333 -12.14126 -12.13640 -11.90249 -11.44744 -11.37851 -11.21838 -11.11844 -10.87700 -10.74907 -10.64946 -10.30451 -10.00939 -9.88615 -9.70496 -9.23216 -9.02839 -8.96584 -8.37164 -7.15118 -6.16224 -3.18513 1.12483 1.18445 1.87908 2.48230 2.65432 3.25078 3.31464 3.51161 3.54545 3.71645 3.85207 4.17757 4.35924 4.48536 4.57795 4.63081 4.76854 4.88917 5.04561 5.14390 5.21636 5.27140 5.34321 5.46355 5.48877 5.55668 5.56732 5.70951 5.74329 5.87604 5.97543 6.17235 6.31248 6.47307 6.55827 6.58154 6.80699 6.92485 7.72703 7.75842 8.32922 8.69520 9.13045 9.99662 10.12429 11.31660 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003352 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.446185 B = 8351.288019 C = 9298.242020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.039 4.039 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.067 0.933 9 N -0.723 5.723 10 C 0.178 3.822 11 H 0.065 0.935 12 C -0.141 4.141 13 C 0.110 3.890 14 N -0.602 5.602 15 C 0.606 3.394 16 O -0.530 6.530 17 C -0.249 4.249 18 C 0.160 3.840 19 Cl 0.024 6.976 20 N -0.274 5.274 21 N -0.448 5.448 22 H 0.445 0.555 23 C 0.174 3.826 24 C -0.108 4.108 25 C -0.169 4.169 26 C -0.155 4.155 27 C 0.084 3.916 28 H 0.256 0.744 29 H 0.370 0.630 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 -22.728 -1.472 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.365 5.365 10 C 0.066 3.934 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.014 4.014 14 N -0.336 5.336 15 C 0.391 3.609 16 O -0.407 6.407 17 C -0.265 4.265 18 C -0.033 4.033 19 Cl 0.052 6.948 20 N -0.099 5.099 21 N -0.157 5.157 22 H 0.292 0.708 23 C 0.042 3.958 24 C -0.128 4.128 25 C -0.207 4.207 26 C -0.193 4.193 27 C -0.041 4.041 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.364 -21.964 -0.769 23.889 hybrid contribution 0.029 -1.406 -0.033 1.406 sum 9.393 -23.370 -0.802 25.200 Atomic orbital electron populations 1.70899 1.06083 1.28504 1.52976 1.25800 0.96985 1.01071 0.99898 0.83255 0.74276 0.75521 0.75973 1.21000 1.22090 1.22169 1.20047 0.92135 0.85556 1.49223 0.91500 1.42310 1.04844 1.00389 1.88922 1.21234 0.94502 0.85549 0.92094 0.91693 1.22913 1.00257 0.94349 1.00428 1.21929 0.94678 0.97160 0.87649 1.48454 1.47703 1.08993 1.28454 1.16699 0.78768 0.83969 0.81432 1.90802 1.44848 1.73780 1.31224 1.19712 1.01735 0.94906 1.10110 1.22544 0.92971 0.91062 0.96709 1.98433 1.39712 1.93987 1.62718 1.77165 1.01335 1.19751 1.11684 1.45747 1.23986 1.06437 1.39577 0.70817 1.20333 0.95538 0.84012 0.95897 1.20738 0.89233 1.00685 1.02097 1.23085 1.03028 0.98938 0.95616 1.23129 0.93936 1.03723 0.98521 1.23411 1.02102 0.76855 1.01759 0.93323 0.79576 0.90545 0.90184 0.91960 0.91947 0.84453 0.88845 0.86944 0.86994 0.88239 0.90846 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.40 13.70 55.49 0.76 -27.64 16 2 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 3 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.34 -9.22 9.98 -15.06 -0.15 -9.37 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.27 5.27 -51.35 -0.27 -17.54 16 10 C 0.18 3.37 3.69 -65.79 -0.24 3.13 16 11 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 12 C -0.14 -2.07 6.58 -24.90 -0.16 -2.24 16 13 C 0.11 1.45 6.47 -3.07 -0.02 1.43 16 14 N -0.60 -9.70 3.33 -171.80 -0.57 -10.27 16 15 C 0.61 10.22 7.34 -12.54 -0.09 10.13 16 16 O -0.53 -10.93 17.36 5.27 0.09 -10.84 16 17 C -0.25 -3.47 5.06 -105.04 -0.53 -4.00 16 18 C 0.16 2.17 7.89 -16.90 -0.13 2.04 16 19 Cl 0.02 0.31 29.19 -51.86 -1.51 -1.20 16 20 N -0.27 -3.33 12.64 33.18 0.42 -2.91 16 21 N -0.45 -4.05 7.17 33.86 0.24 -3.81 16 22 H 0.45 2.34 7.95 -182.72 -1.45 0.89 16 23 C 0.17 1.84 6.80 -81.60 -0.55 1.29 16 24 C -0.11 -0.90 6.02 -91.77 -0.55 -1.46 16 25 C -0.17 -0.86 10.14 -26.69 -0.27 -1.13 16 26 C -0.16 -1.00 10.24 -26.69 -0.27 -1.28 16 27 C 0.08 1.58 6.60 -2.53 -0.02 1.56 16 28 H 0.26 7.55 6.77 -40.82 -0.28 7.28 16 29 H 0.37 9.07 6.54 -40.82 -0.27 8.80 16 30 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 0.32 7.17 -51.93 -0.37 -0.05 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -34.06 357.76 -9.85 -43.91 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.21 Total: 5.64 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.10 Total: -1.11 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.58 Total: -62.17 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.51 Total: -1.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.06 -9.85 -43.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968887242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.562 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds