Wall clock time and date at job start Tue Mar 31 2020 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55160 * 111.00678 * 198.64617 * 10 9 7 13 13 C 1.54317 * 102.94328 * 206.42332 * 12 10 9 14 14 N 1.47018 * 107.27559 * 22.19141 * 13 12 10 15 15 C 1.34774 * 125.65075 * 181.02260 * 14 13 12 16 16 O 1.21607 * 119.99961 * 180.02562 * 15 14 13 17 17 C 1.47380 * 119.99897 * 0.04444 * 15 14 13 18 18 C 1.41393 * 126.42261 * 270.01777 * 17 15 14 19 19 Cl 1.73596 * 126.00309 * 359.96999 * 18 17 15 20 20 N 1.30534 * 107.99204 * 179.97438 * 18 17 15 21 21 N 1.39928 * 108.89091 * 0.02562 * 20 18 17 22 22 H 0.97005 * 125.73681 * 179.97438 * 21 20 18 23 23 C 1.34236 * 108.52759 * 359.76513 * 21 20 18 24 24 C 1.50698 * 126.28191 * 180.23375 * 23 21 20 25 25 C 1.53001 * 117.50297 * 8.90837 * 24 23 21 26 26 C 1.53000 * 117.49847 * 300.24720 * 24 23 21 27 27 C 1.47429 * 108.70189 * 1.05641 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09002 * 110.71833 * 324.78918 * 12 10 9 31 31 H 1.09000 * 110.72096 * 88.05277 * 12 10 9 32 32 H 1.09003 * 109.88379 * 262.77417 * 13 12 10 33 33 H 1.09007 * 110.01154 * 141.68197 * 13 12 10 34 34 H 1.09001 * 115.55259 * 154.58488 * 24 23 21 35 35 H 1.09006 * 117.49483 * 0.02562 * 25 24 23 36 36 H 1.08998 * 117.49877 * 145.01803 * 25 24 23 37 37 H 1.09001 * 117.50412 * 214.98234 * 26 24 23 38 38 H 1.08999 * 117.49582 * 0.02562 * 26 24 23 39 39 H 1.08995 * 110.36765 * 217.02980 * 27 14 13 40 40 H 1.09005 * 110.36395 * 94.71183 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 1.1478 -4.8245 -0.4659 13 6 1.7840 -6.0521 0.2193 14 7 2.5581 -5.5587 1.3677 15 6 3.2809 -6.3198 2.2131 16 8 3.8840 -5.8017 3.1333 17 6 3.3408 -7.7800 2.0221 18 6 2.4621 -8.7365 2.5809 19 17 1.1135 -8.3987 3.6205 20 7 2.8432 -9.9181 2.1778 21 7 3.9663 -9.7758 1.3554 22 1 4.4480 -10.4990 0.9241 23 6 4.2625 -8.4700 1.2601 24 6 5.3949 -7.8679 0.4687 25 6 6.1726 -8.7940 -0.4685 26 6 6.8173 -8.3009 0.8294 27 6 2.4121 -4.0936 1.4418 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 0.1247 -4.6769 -0.1202 31 1 1.1781 -4.9293 -1.5505 32 1 2.4441 -6.5661 -0.4794 33 1 1.0050 -6.7331 0.5624 34 1 5.2487 -6.8360 0.1494 35 1 5.8649 -9.8388 -0.5130 36 1 6.5383 -8.3713 -1.4043 37 1 7.6070 -7.5541 0.7469 38 1 6.9340 -9.0216 1.6387 39 1 3.3488 -3.6346 1.7581 40 1 1.6075 -3.8267 2.1271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968887242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:21 Heat of formation + Delta-G solvation = 56.545512 kcal Electronic energy + Delta-G solvation = -25099.596411 eV Core-core repulsion = 21363.270974 eV Total energy + Delta-G solvation = -3736.325437 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.86270 -40.80473 -38.69964 -38.34119 -37.82927 -36.25503 -33.51558 -32.60100 -31.78321 -30.97766 -28.98061 -26.12430 -25.17935 -24.29652 -23.45584 -22.91709 -22.36870 -21.77522 -20.17267 -19.48587 -18.96554 -17.88560 -17.41531 -16.91773 -16.65051 -16.40884 -16.21777 -16.17429 -15.63471 -15.37732 -14.89891 -14.82315 -14.41788 -13.88205 -13.78254 -13.50064 -13.43848 -12.96752 -12.79257 -12.71583 -12.58500 -12.51786 -12.32975 -12.15943 -11.95026 -11.87482 -11.77961 -11.51981 -11.31010 -11.19697 -10.96792 -10.58312 -9.91329 -9.77318 -9.17430 -8.38750 -5.35095 0.24520 0.27645 0.85955 1.35459 1.60438 1.63018 1.69997 1.86069 2.03655 2.71963 2.75523 3.17039 3.34886 3.45428 3.51765 3.59834 3.72574 3.84823 3.88968 3.98233 4.04306 4.15009 4.28129 4.36971 4.42809 4.55728 4.63585 4.67619 4.77961 4.89901 4.92329 4.97769 5.08325 5.12611 5.14848 5.29119 5.61758 5.83595 6.10337 6.42560 6.50935 6.99483 7.07389 7.96701 8.06412 9.12939 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003352 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.446185 B = 8351.288019 C = 9298.242020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.097 4.097 3 Si 1.124 2.876 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.067 0.933 9 N -0.735 5.735 10 C 0.174 3.826 11 H 0.066 0.934 12 C -0.127 4.127 13 C 0.114 3.886 14 N -0.599 5.599 15 C 0.611 3.389 16 O -0.578 6.578 17 C -0.284 4.284 18 C 0.150 3.850 19 Cl 0.016 6.984 20 N -0.281 5.281 21 N -0.424 5.424 22 H 0.465 0.535 23 C 0.201 3.799 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.156 4.156 27 C 0.095 3.905 28 H 0.246 0.754 29 H 0.365 0.635 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.032 -25.103 -3.279 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.289 4.289 3 Si 0.949 3.051 4 H -0.220 1.220 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.376 5.376 10 C 0.063 3.937 11 H 0.084 0.916 12 C -0.166 4.166 13 C -0.008 4.008 14 N -0.332 5.332 15 C 0.398 3.602 16 O -0.458 6.458 17 C -0.299 4.299 18 C -0.042 4.042 19 Cl 0.044 6.956 20 N -0.107 5.107 21 N -0.135 5.135 22 H 0.315 0.685 23 C 0.067 3.933 24 C -0.158 4.158 25 C -0.175 4.175 26 C -0.194 4.194 27 C -0.031 4.031 28 H 0.057 0.943 29 H 0.198 0.802 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.066 -24.442 -2.609 26.957 hybrid contribution -0.398 -0.783 0.521 1.021 sum 10.668 -25.225 -2.088 27.468 Atomic orbital electron populations 1.70996 1.07161 1.28078 1.55830 1.27111 0.97065 1.04506 1.00232 0.82676 0.73457 0.71837 0.77141 1.21952 1.20880 1.19962 1.20361 0.92381 0.86856 1.47084 0.91471 1.42447 1.04763 1.01316 1.89098 1.21376 0.95200 0.85134 0.91941 0.91571 1.22844 0.99089 0.92631 1.01993 1.22078 0.95216 0.96621 0.86922 1.48446 1.47827 1.07605 1.29286 1.17079 0.77556 0.85180 0.80369 1.90766 1.46805 1.75026 1.33171 1.19466 1.04210 0.93074 1.13159 1.22555 0.93133 0.91381 0.97120 1.98424 1.40078 1.94089 1.63025 1.77127 1.02285 1.19027 1.12214 1.45717 1.22890 1.06581 1.38335 0.68468 1.20497 0.94562 0.84084 0.94121 1.20783 0.89541 1.00927 1.04560 1.23271 0.99690 0.99354 0.95199 1.23242 0.92372 1.03916 0.99876 1.22985 0.99992 0.79032 1.01130 0.94326 0.80233 0.90891 0.87767 0.89034 0.90597 0.85845 0.86476 0.85561 0.86677 0.87843 0.93157 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.97 13.70 21.65 0.30 -59.68 16 2 C -0.10 -5.57 5.50 84.86 0.47 -5.10 16 3 Si 1.12 51.53 29.92 68.60 2.05 53.58 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.34 -18.43 9.98 84.03 0.84 -17.60 16 8 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.74 -35.63 5.27 -316.39 -1.67 -37.30 16 10 C 0.17 6.56 3.69 46.39 0.17 6.73 16 11 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 12 C -0.13 -3.54 6.58 31.78 0.21 -3.33 16 13 C 0.11 2.80 6.47 86.73 0.56 3.36 16 14 N -0.60 -19.23 3.33 -815.72 -2.71 -21.94 16 15 C 0.61 20.74 7.34 86.65 0.64 21.38 16 16 O -0.58 -24.67 17.36 -4.05 -0.07 -24.74 16 17 C -0.28 -7.61 5.06 -20.13 -0.10 -7.71 16 18 C 0.15 3.92 7.89 85.66 0.68 4.60 16 19 Cl 0.02 0.42 29.19 -2.72 -0.08 0.34 16 20 N -0.28 -6.23 12.64 -48.95 -0.62 -6.85 16 21 N -0.42 -6.33 7.17 -46.79 -0.34 -6.67 16 22 H 0.46 2.95 7.95 -213.43 -1.70 1.26 16 23 C 0.20 3.79 6.80 42.15 0.29 4.08 16 24 C -0.14 -1.97 6.02 -11.54 -0.07 -2.04 16 25 C -0.14 -0.82 10.14 30.62 0.31 -0.51 16 26 C -0.16 -1.58 10.24 30.62 0.31 -1.26 16 27 C 0.09 3.68 6.60 86.85 0.57 4.26 16 28 H 0.25 15.00 6.77 -92.71 -0.63 14.37 16 29 H 0.36 18.32 6.54 -92.71 -0.61 17.71 16 30 H 0.07 2.11 8.00 -2.39 -0.02 2.10 16 31 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.12 0.16 7.17 -2.38 -0.02 0.14 16 36 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 40 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -76.31 357.76 0.67 -75.64 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -1.06 Total: 20.76 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.87 Total: 6.85 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -5.04 Total: -132.44 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -76.31 0.67 -75.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968887242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.187 kcal (2) G-P(sol) polarization free energy of solvation -76.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds