Wall clock time and date at job start Tue Mar 31 2020 13:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48499 * 109.47301 * 240.00360 * 3 2 1 5 5 H 1.48500 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46931 * 120.00132 * 3 2 1 7 7 C 1.38812 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00413 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.78070 * 323.21621 * 10 9 7 12 12 C 1.55154 * 110.72044 * 199.97382 * 10 9 7 13 13 C 1.55132 * 101.48368 * 205.97059 * 12 10 9 14 14 N 1.47417 * 104.72353 * 37.30077 * 13 12 10 15 15 C 1.34775 * 125.65285 * 155.81969 * 14 13 12 16 16 O 1.21574 * 120.00313 * 179.68889 * 15 14 13 17 17 C 1.47663 * 119.99740 * 359.68340 * 15 14 13 18 18 N 1.31824 * 126.46191 * 359.97438 * 17 15 14 19 19 N 1.28476 * 110.13871 * 179.73746 * 18 17 15 20 20 H 0.97003 * 124.93788 * 180.28974 * 19 18 17 21 21 C 1.35639 * 110.12709 * 0.46042 * 19 18 17 22 22 C 1.50706 * 126.43206 * 179.81113 * 21 19 18 23 23 C 1.53002 * 117.49668 * 59.68966 * 22 21 19 24 24 C 1.53000 * 60.02940 * 252.51929 * 23 22 21 25 25 C 1.35466 * 107.13136 * 359.54710 * 21 19 18 26 26 Cl 1.73596 * 127.23389 * 180.26333 * 25 21 19 27 27 C 1.47027 * 108.70486 * 335.54954 * 14 13 12 28 28 H 0.96996 * 120.00158 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99924 * 359.97438 * 9 7 2 30 30 H 1.09000 * 111.00700 * 324.21409 * 12 10 9 31 31 H 1.09000 * 111.00597 * 88.06407 * 12 10 9 32 32 H 1.08990 * 110.49589 * 278.45305 * 13 12 10 33 33 H 1.09004 * 110.33826 * 156.05810 * 13 12 10 34 34 H 1.09000 * 115.55924 * 205.37372 * 22 21 19 35 35 H 1.09002 * 117.49918 * 145.01964 * 23 22 21 36 36 H 1.09002 * 117.49754 * 0.02562 * 23 22 21 37 37 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 38 38 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 39 39 H 1.08999 * 109.88417 * 120.70130 * 27 14 13 40 40 H 1.09001 * 109.88053 * 241.72356 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9578 -3.5833 -0.6126 12 6 1.1510 -4.8139 -0.4972 13 6 1.8069 -6.0382 0.1939 14 7 2.2242 -5.5419 1.5179 15 6 2.4107 -6.2987 2.6174 16 8 2.7625 -5.7806 3.6595 17 6 2.1875 -7.7571 2.5565 18 7 1.8068 -8.4479 1.5003 19 7 1.7151 -9.6946 1.7967 20 1 1.4555 -10.3951 1.1779 21 6 2.0304 -9.8886 3.1016 22 6 2.0392 -11.2056 3.8340 23 6 2.9715 -12.2995 3.3094 24 6 1.4599 -12.4221 3.1076 25 6 2.3417 -8.6769 3.6212 26 17 2.8275 -8.3261 5.2505 27 6 2.4095 -4.0856 1.4386 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 0.1232 -4.6758 -0.1617 31 1 1.1967 -4.9091 -1.5821 32 1 2.6728 -6.3784 -0.3739 33 1 1.0823 -6.8452 0.3025 34 1 1.8909 -11.1451 4.9122 35 1 3.4365 -12.9587 4.0424 36 1 3.5788 -12.0663 2.4348 37 1 1.0725 -12.2693 2.1002 38 1 0.9304 -13.1622 3.7076 39 1 1.7456 -3.5883 2.1458 40 1 3.4458 -3.8311 1.6612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969201857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:15 Heat of formation + Delta-G solvation = 84.654285 kcal Electronic energy + Delta-G solvation = -24544.957087 eV Core-core repulsion = 20809.850538 eV Total energy + Delta-G solvation = -3735.106549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.07671 -39.45247 -37.73104 -37.15549 -36.53866 -34.08562 -32.17046 -31.40004 -30.75110 -29.49319 -27.55658 -24.93748 -24.01600 -23.13696 -22.92874 -22.09636 -21.38837 -19.98634 -18.82586 -18.30846 -17.24194 -16.77363 -16.40092 -15.99307 -15.73335 -15.08863 -14.97252 -14.54123 -14.30225 -13.83091 -13.40091 -13.22436 -12.92317 -12.68983 -12.43980 -12.22183 -12.20442 -11.93801 -11.66502 -11.50568 -11.35866 -11.13259 -11.03675 -10.79604 -10.74584 -10.67322 -10.24860 -9.99291 -9.81406 -9.69429 -9.58309 -8.95560 -8.93302 -8.22957 -7.04289 -5.79405 -3.10023 1.26240 1.56523 1.84069 2.62218 3.19139 3.25606 3.45397 3.46256 3.49880 3.50774 3.85918 4.11574 4.24307 4.34392 4.49735 4.58400 4.79527 4.98164 5.07319 5.13414 5.24714 5.35335 5.41232 5.41737 5.48647 5.59428 5.66048 5.79825 5.93118 6.06776 6.17466 6.37999 6.45225 6.47567 6.61047 6.77650 6.94850 7.41630 7.69173 7.81982 8.37541 8.40784 9.50056 10.03872 10.38762 11.42658 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.002604 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.305419 B =10751.864194 C =11455.063617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.141 4.141 13 C 0.104 3.896 14 N -0.598 5.598 15 C 0.602 3.398 16 O -0.521 6.521 17 C 0.019 3.981 18 N -0.238 5.238 19 N -0.379 5.379 20 H 0.448 0.552 21 C 0.059 3.941 22 C -0.091 4.091 23 C -0.163 4.163 24 C -0.174 4.174 25 C -0.095 4.095 26 Cl -0.005 7.005 27 C 0.084 3.916 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -29.058 3.846 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.353 5.353 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.180 4.180 13 C -0.019 4.019 14 N -0.331 5.331 15 C 0.387 3.613 16 O -0.395 6.395 17 C -0.143 4.143 18 N -0.073 5.073 19 N -0.094 5.094 20 H 0.294 0.706 21 C -0.067 4.067 22 C -0.110 4.110 23 C -0.200 4.200 24 C -0.211 4.211 25 C -0.132 4.132 26 Cl 0.024 6.976 27 C -0.041 4.041 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.113 -28.400 3.488 28.782 hybrid contribution 0.213 0.451 0.639 0.810 sum 3.326 -27.949 4.127 28.447 Atomic orbital electron populations 1.69650 1.05165 1.25984 1.57031 1.24769 0.95523 0.97833 1.02447 0.86247 0.78550 0.83319 0.77944 1.21171 1.21680 1.21094 1.19219 0.91104 0.83950 1.43574 0.90968 1.42371 1.05807 0.99422 1.87674 1.21218 0.94875 0.86370 0.91572 0.91640 1.23117 1.00183 0.94401 1.00286 1.22491 0.99193 0.97402 0.82835 1.48365 1.65722 1.09408 1.09612 1.16421 0.78859 0.82722 0.83263 1.90843 1.47372 1.72164 1.29130 1.21970 1.07002 0.95564 0.89783 1.73838 1.18371 0.90242 1.24810 1.43225 1.50477 1.06972 1.08724 0.70614 1.20099 1.05610 0.95194 0.85804 1.20527 1.07003 0.84160 0.99344 1.23120 0.92839 1.00356 1.03734 1.23056 0.96813 0.99579 1.01671 1.20386 1.10994 0.91924 0.89940 1.98363 1.89751 1.94835 1.14681 1.23297 1.01416 0.77058 1.02307 0.93333 0.77853 0.90573 0.90116 0.91641 0.89602 0.84695 0.87367 0.88373 0.88954 0.87268 0.90651 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.80 9.98 -15.06 -0.15 -6.95 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.59 5.18 -51.65 -0.27 -17.86 16 10 C 0.17 3.37 3.59 -66.09 -0.24 3.13 16 11 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 12 C -0.14 -2.22 6.71 -24.46 -0.16 -2.38 16 13 C 0.10 1.49 6.17 -2.41 -0.01 1.47 16 14 N -0.60 -10.42 3.32 -171.56 -0.57 -10.99 16 15 C 0.60 10.93 7.85 -12.41 -0.10 10.83 16 16 O -0.52 -10.94 16.20 5.30 0.09 -10.85 16 17 C 0.02 0.29 6.96 -82.76 -0.58 -0.29 16 18 N -0.24 -2.85 9.33 33.42 0.31 -2.54 16 19 N -0.38 -3.20 6.77 33.62 0.23 -2.97 16 20 H 0.45 2.02 7.95 -190.43 -1.51 0.51 16 21 C 0.06 0.56 6.75 -81.90 -0.55 0.00 16 22 C -0.09 -0.56 6.13 -91.73 -0.56 -1.12 16 23 C -0.16 -0.71 10.23 -26.73 -0.27 -0.98 16 24 C -0.17 -0.63 10.15 -26.70 -0.27 -0.91 16 25 C -0.10 -1.24 6.79 -39.31 -0.27 -1.51 16 26 Cl 0.00 -0.07 28.02 -51.86 -1.45 -1.52 16 27 C 0.08 1.66 6.62 -3.06 -0.02 1.64 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.39 10.13 7.71 -40.82 -0.31 9.82 16 30 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.14 6.18 -51.93 -0.32 0.81 16 34 H 0.14 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.24 7.16 -51.92 -0.37 -0.14 16 38 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.69 8.03 -51.93 -0.42 1.28 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -33.57 352.46 -10.22 -43.79 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.28 Total: 4.90 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -3.28 Total: 2.58 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.43 Total: -61.58 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.45 Total: -1.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.57 -10.22 -43.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969201857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.441 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds