Wall clock time and date at job start Tue Mar 31 2020 13:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48499 * 109.47301 * 240.00360 * 3 2 1 5 5 H 1.48500 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46931 * 120.00132 * 3 2 1 7 7 C 1.38812 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00413 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.78070 * 323.21621 * 10 9 7 12 12 C 1.55154 * 110.72044 * 199.97382 * 10 9 7 13 13 C 1.55132 * 101.48368 * 205.97059 * 12 10 9 14 14 N 1.47417 * 104.72353 * 37.30077 * 13 12 10 15 15 C 1.34775 * 125.65285 * 155.81969 * 14 13 12 16 16 O 1.21574 * 120.00313 * 179.68889 * 15 14 13 17 17 C 1.47663 * 119.99740 * 359.68340 * 15 14 13 18 18 N 1.31824 * 126.46191 * 359.97438 * 17 15 14 19 19 N 1.28476 * 110.13871 * 179.73746 * 18 17 15 20 20 H 0.97003 * 124.93788 * 180.28974 * 19 18 17 21 21 C 1.35639 * 110.12709 * 0.46042 * 19 18 17 22 22 C 1.50706 * 126.43206 * 179.81113 * 21 19 18 23 23 C 1.53002 * 117.49668 * 59.68966 * 22 21 19 24 24 C 1.53000 * 60.02940 * 252.51929 * 23 22 21 25 25 C 1.35466 * 107.13136 * 359.54710 * 21 19 18 26 26 Cl 1.73596 * 127.23389 * 180.26333 * 25 21 19 27 27 C 1.47027 * 108.70486 * 335.54954 * 14 13 12 28 28 H 0.96996 * 120.00158 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99924 * 359.97438 * 9 7 2 30 30 H 1.09000 * 111.00700 * 324.21409 * 12 10 9 31 31 H 1.09000 * 111.00597 * 88.06407 * 12 10 9 32 32 H 1.08990 * 110.49589 * 278.45305 * 13 12 10 33 33 H 1.09004 * 110.33826 * 156.05810 * 13 12 10 34 34 H 1.09000 * 115.55924 * 205.37372 * 22 21 19 35 35 H 1.09002 * 117.49918 * 145.01964 * 23 22 21 36 36 H 1.09002 * 117.49754 * 0.02562 * 23 22 21 37 37 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 38 38 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 39 39 H 1.08999 * 109.88417 * 120.70130 * 27 14 13 40 40 H 1.09001 * 109.88053 * 241.72356 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9578 -3.5833 -0.6126 12 6 1.1510 -4.8139 -0.4972 13 6 1.8069 -6.0382 0.1939 14 7 2.2242 -5.5419 1.5179 15 6 2.4107 -6.2987 2.6174 16 8 2.7625 -5.7806 3.6595 17 6 2.1875 -7.7571 2.5565 18 7 1.8068 -8.4479 1.5003 19 7 1.7151 -9.6946 1.7967 20 1 1.4555 -10.3951 1.1779 21 6 2.0304 -9.8886 3.1016 22 6 2.0392 -11.2056 3.8340 23 6 2.9715 -12.2995 3.3094 24 6 1.4599 -12.4221 3.1076 25 6 2.3417 -8.6769 3.6212 26 17 2.8275 -8.3261 5.2505 27 6 2.4095 -4.0856 1.4386 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 0.1232 -4.6758 -0.1617 31 1 1.1967 -4.9091 -1.5821 32 1 2.6728 -6.3784 -0.3739 33 1 1.0823 -6.8452 0.3025 34 1 1.8909 -11.1451 4.9122 35 1 3.4365 -12.9587 4.0424 36 1 3.5788 -12.0663 2.4348 37 1 1.0725 -12.2693 2.1002 38 1 0.9304 -13.1622 3.7076 39 1 1.7456 -3.5883 2.1458 40 1 3.4458 -3.8311 1.6612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969201857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:14 Heat of formation + Delta-G solvation = 62.046557 kcal Electronic energy + Delta-G solvation = -24545.937432 eV Core-core repulsion = 20809.850538 eV Total energy + Delta-G solvation = -3736.086894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.96757 -40.86121 -38.67163 -38.15196 -37.51882 -35.93620 -33.56912 -32.77534 -31.69896 -31.03581 -29.15161 -26.44093 -25.19801 -24.31542 -23.46427 -23.15934 -22.20106 -21.55413 -20.11052 -19.21173 -19.06918 -17.87838 -17.58353 -16.99916 -16.71117 -16.48040 -16.26036 -15.82456 -15.42239 -15.22442 -14.99483 -14.76160 -14.26013 -13.88339 -13.54728 -13.41493 -13.19114 -13.13294 -12.88007 -12.68317 -12.45401 -12.43489 -12.31277 -12.13854 -12.00838 -11.85766 -11.74813 -11.49160 -11.44992 -11.16231 -10.97199 -10.51344 -9.78256 -9.65044 -9.09610 -7.96074 -5.26362 0.27543 0.62754 0.97077 1.47967 1.51240 1.56729 1.67407 2.03247 2.15335 2.56154 2.87705 3.10291 3.34687 3.36461 3.62254 3.68286 3.79336 3.93190 3.95957 4.02887 4.12096 4.36014 4.38039 4.47786 4.54696 4.57158 4.75622 4.78198 4.93298 4.99822 5.03075 5.07929 5.17836 5.20280 5.25597 5.38288 5.52697 5.82758 6.25284 6.41841 6.55284 7.01714 7.32276 8.03886 8.27801 9.26693 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.002604 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.305419 B =10751.864194 C =11455.063617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.725 5.725 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.129 4.129 13 C 0.112 3.888 14 N -0.600 5.600 15 C 0.597 3.403 16 O -0.562 6.562 17 C -0.011 4.011 18 N -0.232 5.232 19 N -0.352 5.352 20 H 0.468 0.532 21 C 0.089 3.911 22 C -0.117 4.117 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.125 4.125 26 Cl -0.018 7.018 27 C 0.096 3.904 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.039 0.961 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -32.313 2.484 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.364 5.364 10 C 0.057 3.943 11 H 0.092 0.908 12 C -0.167 4.167 13 C -0.010 4.010 14 N -0.333 5.333 15 C 0.384 3.616 16 O -0.440 6.440 17 C -0.171 4.171 18 N -0.069 5.069 19 N -0.071 5.071 20 H 0.319 0.681 21 C -0.039 4.039 22 C -0.137 4.137 23 C -0.193 4.193 24 C -0.191 4.191 25 C -0.163 4.163 26 Cl 0.010 6.990 27 C -0.030 4.030 28 H 0.061 0.939 29 H 0.209 0.791 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.057 0.943 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.567 -31.723 2.085 31.991 hybrid contribution 0.092 1.260 1.071 1.656 sum 3.659 -30.463 3.157 30.844 Atomic orbital electron populations 1.69801 1.06581 1.26241 1.59085 1.25565 0.96367 1.01118 1.03377 0.85238 0.77248 0.79233 0.78202 1.19902 1.22187 1.20860 1.19608 0.91563 0.85092 1.41598 0.90403 1.42519 1.05487 1.00559 1.87786 1.21409 0.95737 0.85738 0.91441 0.90775 1.23060 0.98782 0.92946 1.01925 1.22635 1.00335 0.96919 0.81083 1.48403 1.65751 1.08243 1.10915 1.16903 0.77907 0.84225 0.82593 1.90802 1.49178 1.73419 1.30568 1.21466 1.10057 0.94010 0.91580 1.73706 1.17979 0.91394 1.23812 1.43303 1.48452 1.06402 1.08945 0.68099 1.20418 1.02487 0.95354 0.85595 1.20639 1.10267 0.83406 0.99339 1.23223 0.93523 0.98830 1.03769 1.23239 0.96357 0.97383 1.02167 1.20564 1.13196 0.93049 0.89470 1.98347 1.90020 1.95048 1.15563 1.22881 0.99837 0.78880 1.01430 0.93938 0.79105 0.91528 0.87483 0.89355 0.87919 0.84762 0.86241 0.88264 0.87372 0.85833 0.94287 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.25 -13.71 9.98 84.03 0.84 -12.87 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.72 -36.37 5.18 -317.32 -1.64 -38.02 16 10 C 0.17 6.54 3.59 46.18 0.17 6.70 16 11 H 0.07 2.79 8.12 -2.39 -0.02 2.77 16 12 C -0.13 -3.85 6.71 32.06 0.22 -3.64 16 13 C 0.11 2.99 6.17 86.93 0.54 3.52 16 14 N -0.60 -21.00 3.32 -814.95 -2.71 -23.71 16 15 C 0.60 22.07 7.85 86.73 0.68 22.75 16 16 O -0.56 -24.75 16.20 -3.95 -0.06 -24.81 16 17 C -0.01 -0.31 6.96 42.45 0.30 -0.01 16 18 N -0.23 -5.03 9.33 -48.18 -0.45 -5.48 16 19 N -0.35 -4.82 6.77 -47.54 -0.32 -5.15 16 20 H 0.47 2.20 7.95 -219.98 -1.75 0.45 16 21 C 0.09 1.46 6.75 41.33 0.28 1.74 16 22 C -0.12 -1.11 6.13 -11.51 -0.07 -1.18 16 23 C -0.16 -0.81 10.23 30.60 0.31 -0.49 16 24 C -0.15 -0.48 10.15 30.62 0.31 -0.17 16 25 C -0.13 -3.20 6.79 22.44 0.15 -3.05 16 26 Cl -0.02 -0.50 28.02 -2.72 -0.08 -0.57 16 27 C 0.10 3.90 6.62 86.73 0.57 4.47 16 28 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.38 20.25 7.71 -92.71 -0.72 19.53 16 30 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 31 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 2.44 6.18 -2.38 -0.01 2.43 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 0.01 7.16 -2.38 -0.02 -0.01 16 38 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.04 1.85 8.03 -2.39 -0.02 1.84 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -75.85 352.46 0.44 -75.41 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -1.36 Total: 18.70 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 4.76 Total: 14.11 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -4.84 Total: -131.46 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.57 kcal Total: -75.85 0.44 -75.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969201857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.457 kcal (2) G-P(sol) polarization free energy of solvation -75.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds