Wall clock time and date at job start Tue Mar 31 2020 13:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31935 * 119.01427 * 2 1 4 4 C 1.32132 * 121.05350 * 179.70487 * 3 2 1 5 5 C 1.38983 * 119.12952 * 0.56800 * 4 3 2 6 6 Cl 1.73599 * 120.89164 * 179.74110 * 5 4 3 7 7 C 1.39639 * 118.22116 * 359.46542 * 5 4 3 8 8 C 1.48372 * 120.55858 * 180.27470 * 7 5 4 9 9 O 1.21485 * 120.00543 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99496 * 180.02562 * 8 7 5 11 11 C 1.47021 * 125.65256 * 0.02562 * 10 8 7 12 12 C 1.54327 * 107.27210 * 181.02531 * 11 10 8 13 13 C 1.55158 * 102.94440 * 22.19030 * 12 11 10 14 14 H 1.09000 * 111.00678 * 82.60812 * 13 12 11 15 15 N 1.46499 * 111.00625 * 206.43047 * 13 12 11 16 16 C 1.46499 * 120.00265 * 59.99387 * 15 13 12 17 17 C 1.36936 * 119.99628 * 240.00113 * 15 13 12 18 18 H 1.08003 * 120.00064 * 23.23855 * 17 15 13 19 19 C 1.38811 * 120.00048 * 203.24015 * 17 15 13 20 20 N 1.31620 * 119.99738 * 13.76865 * 19 17 15 21 21 Si 1.86794 * 120.00380 * 193.76354 * 19 17 15 22 22 H 1.48509 * 109.47120 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47129 * 120.00146 * 21 19 17 24 24 H 1.48492 * 109.47614 * 240.00332 * 21 19 17 25 25 C 1.47432 * 125.64657 * 179.71583 * 10 8 7 26 26 N 1.31521 * 119.02353 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46896 * 269.97363 * 1 2 3 28 28 H 1.08996 * 109.47275 * 29.98119 * 1 2 3 29 29 H 1.09008 * 109.46532 * 149.98243 * 1 2 3 30 30 H 1.08003 * 120.43796 * 180.28230 * 4 3 2 31 31 H 1.08995 * 109.87970 * 300.43739 * 11 10 8 32 32 H 1.09000 * 109.88150 * 61.44935 * 11 10 8 33 33 H 1.08996 * 110.72386 * 140.55355 * 12 11 10 34 34 H 1.08999 * 110.71489 * 263.65251 * 12 11 10 35 35 H 1.08999 * 109.46580 * 95.16337 * 16 15 13 36 36 H 1.09001 * 109.46811 * 215.16033 * 16 15 13 37 37 H 1.09000 * 109.47271 * 335.15985 * 16 15 13 38 38 H 0.97005 * 119.99890 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.36558 * 274.75095 * 25 10 8 40 40 H 1.08999 * 110.36344 * 37.06761 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1538 0.0000 4 6 3.4674 1.2008 0.0058 5 6 4.1868 0.0116 0.0000 6 17 5.9228 0.0201 0.0005 7 6 3.4758 -1.1902 -0.0004 8 6 4.1914 -2.4900 -0.0003 9 8 5.4060 -2.5148 -0.0005 10 7 3.4938 -3.6432 -0.0012 11 6 2.0280 -3.7580 -0.0028 12 6 1.6863 -5.2628 0.0230 13 6 2.9734 -5.9015 0.6087 14 1 2.9782 -5.8428 1.6971 15 7 3.1228 -7.2879 0.1596 16 6 3.2276 -7.5874 -1.2706 17 6 3.1644 -8.3039 1.0767 18 1 2.7277 -8.1666 2.0549 19 6 3.7680 -9.5102 0.7492 20 7 4.5304 -9.5956 -0.3203 21 14 3.4984 -11.0124 1.8264 22 1 2.6068 -10.6556 2.9591 23 1 2.8696 -12.0913 1.0228 24 1 4.8040 -11.4845 2.3533 25 6 4.0741 -4.9984 -0.0072 26 7 2.1451 -1.1500 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8899 -0.5142 30 1 3.9811 2.1509 0.0104 31 1 1.6170 -3.2694 0.8805 32 1 1.6212 -3.2985 -0.9036 33 1 0.8316 -5.4531 0.6721 34 1 1.4935 -5.6317 -0.9844 35 1 4.2786 -7.6600 -1.5505 36 1 2.7293 -8.5337 -1.4811 37 1 2.7529 -6.7913 -1.8443 38 1 4.9525 -10.4386 -0.5489 39 1 4.2976 -5.3109 -1.0274 40 1 4.9752 -5.0279 0.6054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972483967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:13 Heat of formation + Delta-G solvation = 38.493520 kcal Electronic energy + Delta-G solvation = -25199.260155 eV Core-core repulsion = 21462.151925 eV Total energy + Delta-G solvation = -3737.108230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55341 -40.88634 -38.99725 -37.82014 -36.61644 -35.23039 -34.11803 -33.40526 -31.32682 -29.58274 -29.39515 -28.06982 -27.13877 -25.22688 -24.06149 -23.68325 -21.16607 -20.92664 -19.45247 -18.93949 -18.40664 -17.60047 -17.40358 -16.96584 -16.78347 -16.29646 -15.87224 -15.57010 -15.03441 -14.82920 -14.62026 -14.36456 -14.20338 -14.01296 -13.80584 -13.44811 -13.24081 -13.15282 -12.86933 -12.80851 -12.67062 -12.54478 -12.41017 -12.31223 -12.18466 -12.12794 -12.04268 -11.80980 -11.46530 -11.34803 -10.65054 -10.37815 -10.33081 -9.72489 -8.79400 -7.83684 -5.33972 -0.91430 -0.43005 0.79560 1.47382 1.49100 1.50385 1.58114 1.60852 2.44337 2.48516 2.56599 2.80767 3.07720 3.28497 3.34912 3.54445 3.73345 3.94079 3.99880 4.20938 4.26513 4.37585 4.45292 4.68789 4.76641 4.77522 4.80372 4.82873 4.96351 5.01325 5.13469 5.21762 5.28308 5.31526 5.42638 5.45523 5.65548 5.70824 6.31018 6.33248 6.63840 6.84343 7.13186 7.83325 8.27783 9.19009 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.003108 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.805237 B = 9006.845992 C = 9936.183031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.313 3.687 3 N -0.496 5.496 4 C 0.183 3.817 5 C -0.120 4.120 6 Cl -0.010 7.010 7 C 0.139 3.861 8 C 0.563 3.437 9 O -0.543 6.543 10 N -0.590 5.590 11 C 0.129 3.871 12 C -0.142 4.142 13 C 0.167 3.833 14 H 0.075 0.925 15 N -0.599 5.599 16 C 0.177 3.823 17 C -0.266 4.266 18 H 0.076 0.924 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.291 1.291 24 H -0.296 1.296 25 C 0.099 3.901 26 N -0.482 5.482 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.220 0.780 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.001 0.999 36 H 0.018 0.982 37 H 0.035 0.965 38 H 0.248 0.752 39 H 0.057 0.943 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 23.950 -0.058 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.210 5.210 4 C 0.014 3.986 5 C -0.153 4.153 6 Cl 0.019 6.981 7 C -0.009 4.009 8 C 0.349 3.651 9 O -0.420 6.420 10 N -0.322 5.322 11 C 0.007 3.993 12 C -0.181 4.181 13 C 0.058 3.942 14 H 0.093 0.907 15 N -0.320 5.320 16 C 0.032 3.968 17 C -0.396 4.396 18 H 0.094 0.906 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.026 4.026 26 N -0.200 5.200 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.236 0.764 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.020 0.980 36 H 0.037 0.963 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.462 23.774 -0.125 25.588 hybrid contribution 1.791 -1.279 0.256 2.216 sum -7.671 22.494 0.131 23.767 Atomic orbital electron populations 1.20828 0.81833 1.05919 1.05689 1.24237 1.00239 0.82286 0.88535 1.68464 1.09030 1.30282 1.13258 1.23967 0.88989 0.97698 0.87992 1.23013 0.89572 0.96279 1.06395 1.98443 1.05047 1.98610 1.96025 1.21307 0.90534 0.93093 0.95965 1.17747 0.86127 0.82709 0.78524 1.90860 1.13347 1.86596 1.51149 1.48396 1.09723 1.04761 1.69318 1.22180 0.77452 0.96096 1.03571 1.23164 0.99027 0.93320 1.02624 1.21648 0.92379 0.82899 0.97267 0.90691 1.44035 1.84522 1.00799 1.02649 1.20504 0.97292 0.96064 0.82946 1.19617 1.30236 0.92771 0.97013 0.90625 1.25828 0.97306 1.01996 0.99461 1.70251 1.33714 1.25246 1.29069 0.85166 0.77052 0.79503 0.78473 1.18728 1.21748 1.22307 1.22848 0.98341 0.80662 1.00739 1.68627 1.06488 1.31347 1.13528 0.87544 0.87743 0.88133 0.76371 0.89449 0.89795 0.88630 0.90932 0.98041 0.96320 0.94701 0.94259 0.92444 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.31 71.24 0.73 -0.04 16 2 C 0.31 5.43 7.64 138.79 1.06 6.49 16 3 N -0.50 -8.45 10.31 -187.76 -1.94 -10.39 16 4 C 0.18 2.94 11.14 84.83 0.94 3.89 16 5 C -0.12 -2.71 6.40 22.79 0.15 -2.56 16 6 Cl -0.01 -0.25 26.25 -2.72 -0.07 -0.32 16 7 C 0.14 3.69 6.75 41.99 0.28 3.98 16 8 C 0.56 18.85 7.85 86.94 0.68 19.53 16 9 O -0.54 -21.21 14.40 -3.67 -0.05 -21.26 16 10 N -0.59 -19.38 3.33 -814.14 -2.71 -22.08 16 11 C 0.13 3.34 5.42 86.73 0.47 3.81 16 12 C -0.14 -4.17 6.49 31.78 0.21 -3.96 16 13 C 0.17 6.51 3.55 46.46 0.16 6.68 16 14 H 0.07 2.96 7.96 -2.39 -0.02 2.95 16 15 N -0.60 -29.01 2.96 -694.59 -2.05 -31.07 16 16 C 0.18 8.53 7.56 127.77 0.97 9.50 16 17 C -0.27 -14.25 9.60 84.03 0.81 -13.44 16 18 H 0.08 3.89 7.87 -2.91 -0.02 3.86 16 19 C -0.05 -2.79 5.08 84.86 0.43 -2.36 16 20 N -0.94 -55.25 10.77 21.65 0.23 -55.01 16 21 Si 0.97 44.51 29.58 68.60 2.03 46.54 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 25 C 0.10 3.86 6.46 86.93 0.56 4.42 16 26 N -0.48 -10.65 6.96 -177.04 -1.23 -11.88 16 27 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.09 2.03 7.44 -2.39 -0.02 2.01 16 32 H 0.08 1.96 7.56 -2.39 -0.02 1.94 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.21 6.47 -2.39 -0.02 2.19 16 35 H 0.00 0.07 7.33 -2.39 -0.02 0.05 16 36 H 0.02 0.95 7.38 -2.39 -0.02 0.94 16 37 H 0.03 1.42 6.37 -2.39 -0.02 1.41 16 38 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 39 H 0.06 2.41 6.96 -2.39 -0.02 2.39 16 40 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 Total: -1.00 -68.76 342.42 2.74 -66.03 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.07 Total: 3.52 kcal Atomic # 6 Polarization: 28.47 SS G_CDS: 7.46 Total: 35.93 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -7.70 Total: -130.43 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.07 Total: -0.32 kcal Total: -68.76 2.74 -66.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972483967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.520 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds