Wall clock time and date at job start Tue Mar 31 2020 13:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46845 * 239.99713 * 3 2 1 5 5 H 1.48498 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47009 * 119.99768 * 3 2 1 7 7 C 1.38813 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 155.05345 * 7 2 1 9 9 N 1.36936 * 119.99974 * 335.06110 * 7 2 1 10 10 C 1.46896 * 120.69032 * 331.85629 * 9 7 2 11 11 C 1.52673 * 109.34236 * 235.31219 * 10 9 7 12 12 C 1.53177 * 109.42917 * 303.76841 * 11 10 9 13 13 C 1.52635 * 109.35688 * 58.92917 * 12 11 10 14 14 C 1.53461 * 113.68276 * 74.05615 * 13 12 11 15 15 N 1.47665 * 85.96545 * 91.17756 * 14 13 12 16 16 C 1.34785 * 134.45760 * 204.28328 * 15 14 13 17 17 O 1.21731 * 120.00449 * 180.02562 * 16 15 14 18 18 C 1.46290 * 119.99275 * 0.02562 * 16 15 14 19 19 S 1.75819 * 125.47116 * 0.02562 * 18 16 15 20 20 C 1.70596 * 91.60965 * 180.02562 * 19 18 16 21 21 C 1.33730 * 111.04320 * 0.02562 * 20 19 18 22 22 C 1.36932 * 125.46310 * 179.71834 * 18 16 15 23 23 F 1.35106 * 123.40055 * 359.97438 * 22 18 16 24 24 C 1.47676 * 91.09496 * 24.28688 * 15 14 13 25 25 C 1.47122 * 120.68750 * 152.13580 * 9 7 2 26 26 H 0.97000 * 119.99828 * 174.26566 * 1 2 3 27 27 H 1.08995 * 109.53257 * 355.23673 * 10 9 7 28 28 H 1.08996 * 109.53656 * 115.47168 * 10 9 7 29 29 H 1.09000 * 109.55444 * 183.71642 * 11 10 9 30 30 H 1.08999 * 109.34543 * 63.69027 * 11 10 9 31 31 H 1.09000 * 109.49363 * 298.96772 * 12 11 10 32 32 H 1.08998 * 109.49156 * 178.89383 * 12 11 10 33 33 H 1.08996 * 113.79364 * 205.44531 * 14 13 12 34 34 H 1.09009 * 113.79001 * 336.92250 * 14 13 12 35 35 H 1.08006 * 124.47848 * 179.97438 * 20 19 18 36 36 H 1.07997 * 122.45599 * 179.97438 * 21 20 19 37 37 H 1.08996 * 113.79208 * 221.44569 * 24 15 14 38 38 H 1.09005 * 113.89585 * 89.98242 * 24 15 14 39 39 H 1.09001 * 109.63282 * 248.30798 * 25 9 7 40 40 H 1.09003 * 109.63687 * 8.91545 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0147 -1.2459 -0.3939 9 7 1.4214 -2.3325 0.5011 10 6 0.3968 -2.2426 1.5499 11 6 0.8162 -3.1002 2.7414 12 6 1.0558 -4.5392 2.2741 13 6 2.1425 -4.5487 1.2023 14 6 3.5560 -4.3227 1.7554 15 7 3.6343 -5.7930 1.8679 16 6 4.3505 -6.6448 2.6282 17 8 4.2030 -7.8464 2.5002 18 6 5.3053 -6.1253 3.6072 19 16 5.6315 -4.4245 3.9110 20 6 6.7821 -4.8099 5.1102 21 6 6.8983 -6.1341 5.2562 22 6 6.0840 -6.8855 4.4383 23 9 6.0597 -8.2362 4.4509 24 6 2.6134 -5.9563 0.8134 25 6 1.8060 -3.6627 0.0039 26 1 -0.4850 -0.8359 -0.0839 27 1 0.2915 -1.2056 1.8685 28 1 -0.5552 -2.6042 1.1615 29 1 0.0283 -3.0888 3.4945 30 1 1.7349 -2.6991 3.1694 31 1 0.1331 -4.9456 1.8601 32 1 1.3743 -5.1480 3.1203 33 1 4.2499 -3.8996 1.0292 34 1 3.5752 -3.8067 2.7155 35 1 7.3431 -4.0808 5.6760 36 1 7.5770 -6.5814 5.9673 37 1 1.8839 -6.7381 1.0249 38 1 3.0252 -6.0196 -0.1939 39 1 0.9770 -4.0992 -0.5532 40 1 2.6791 -3.5737 -0.6426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981746248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:47 Heat of formation + Delta-G solvation = 12.970965 kcal Electronic energy + Delta-G solvation = -25614.025595 eV Core-core repulsion = 21857.934369 eV Total energy + Delta-G solvation = -3756.091226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.97772 -40.71749 -38.58729 -37.32269 -36.07301 -32.91005 -31.07598 -30.48480 -29.36011 -26.31717 -26.27480 -25.27456 -24.57604 -22.41009 -21.39992 -20.36158 -19.71553 -18.17755 -18.02415 -17.42022 -16.94888 -16.36138 -16.11566 -15.54775 -15.17405 -14.66750 -14.47717 -14.24074 -14.07131 -13.93457 -13.69280 -13.53120 -13.23723 -12.93511 -12.66432 -12.46495 -12.13356 -12.02099 -11.92510 -11.49417 -11.36724 -11.05229 -10.76926 -10.48839 -10.31409 -10.12535 -10.07239 -9.92422 -9.80723 -9.32057 -9.25516 -8.79230 -8.58539 -8.42106 -6.95055 -6.12789 -3.30504 0.14026 1.10259 1.54162 1.92355 2.73092 3.07986 3.45136 3.47393 3.65868 4.02390 4.27253 4.45562 4.59639 4.64849 4.94551 4.99420 5.09593 5.24098 5.29884 5.41838 5.45009 5.50571 5.55505 5.58954 5.67426 5.72213 5.85518 5.89507 6.02660 6.09582 6.22538 6.36254 6.41388 6.51860 6.59673 6.64573 7.01240 7.14593 7.65687 7.92043 8.07790 8.51148 9.03611 9.77263 10.21742 11.15622 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003840 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.706394 B = 7290.276250 C = 8233.523022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.021 4.021 3 Si 1.062 2.938 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.293 1.293 7 C -0.351 4.351 8 H 0.056 0.944 9 N -0.595 5.595 10 C 0.148 3.852 11 C -0.136 4.136 12 C -0.085 4.085 13 C -0.098 4.098 14 C 0.112 3.888 15 N -0.638 5.638 16 C 0.609 3.391 17 O -0.533 6.533 18 C -0.311 4.311 19 S 0.280 5.720 20 C -0.224 4.224 21 C -0.180 4.180 22 C 0.156 3.844 23 F -0.106 7.106 24 C 0.119 3.881 25 C 0.163 3.837 26 H 0.270 0.730 27 H 0.081 0.919 28 H 0.017 0.983 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.580 -8.261 9.092 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.224 4.224 3 Si 0.891 3.109 4 H -0.220 1.220 5 H -0.211 1.211 6 H -0.220 1.220 7 C -0.480 4.480 8 H 0.074 0.926 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.175 4.175 12 C -0.123 4.123 13 C -0.101 4.101 14 C -0.010 4.010 15 N -0.373 5.373 16 C 0.398 3.602 17 O -0.412 6.412 18 C -0.432 4.432 19 S 0.548 5.452 20 C -0.362 4.362 21 C -0.212 4.212 22 C 0.121 3.879 23 F -0.085 7.085 24 C -0.003 4.003 25 C 0.036 3.964 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.196 0.804 36 H 0.173 0.827 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.907 -6.024 8.605 14.439 hybrid contribution 1.035 -3.287 0.679 3.512 sum 10.942 -9.311 9.284 17.106 Atomic orbital electron populations 1.70781 1.06659 1.30423 1.47474 1.25806 0.96479 1.01404 0.98673 0.83571 0.74861 0.76227 0.76193 1.21984 1.21123 1.22028 1.19924 0.97447 0.88312 1.42314 0.92577 1.44092 1.46505 1.00844 1.40417 1.20850 0.90358 0.99447 0.87112 1.21999 1.00937 0.95117 0.99487 1.21138 0.97010 0.97748 0.96365 1.22581 0.94148 0.94293 0.99055 1.23416 0.97190 0.79034 1.01397 1.50004 1.41061 1.08406 1.37812 1.16269 0.78741 0.85216 0.79944 1.90859 1.66729 1.14042 1.69539 1.24658 1.10228 0.99102 1.09214 1.83721 1.31434 1.00471 1.29605 1.25377 1.05229 1.00079 1.05535 1.19794 1.04066 0.93324 1.04043 1.16889 0.96620 0.78284 0.96108 1.91566 1.94979 1.26840 1.95093 1.23266 0.88161 0.97920 0.90928 1.20785 0.98217 0.86142 0.91231 0.91925 0.90105 0.96548 0.92747 0.92356 0.91829 0.93027 0.88806 0.89959 0.80398 0.82689 0.90027 0.89385 0.95754 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.89 12.38 55.49 0.69 -25.20 16 2 C -0.02 -0.56 4.69 -17.43 -0.08 -0.64 16 3 Si 1.06 23.68 29.99 -169.99 -5.10 18.58 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.35 -8.92 9.50 -15.06 -0.14 -9.06 16 8 H 0.06 1.42 7.94 -52.49 -0.42 1.01 16 9 N -0.60 -13.31 2.86 -172.75 -0.49 -13.80 16 10 C 0.15 3.15 4.62 -3.99 -0.02 3.13 16 11 C -0.14 -2.32 5.99 -26.81 -0.16 -2.48 16 12 C -0.08 -1.30 5.02 -26.83 -0.13 -1.44 16 13 C -0.10 -1.50 0.87 -154.44 -0.13 -1.63 16 14 C 0.11 1.62 6.27 -3.17 -0.02 1.60 16 15 N -0.64 -9.60 3.45 -182.19 -0.63 -10.23 16 16 C 0.61 10.18 8.00 -13.02 -0.10 10.07 16 17 O -0.53 -10.65 16.86 5.16 0.09 -10.56 16 18 C -0.31 -4.38 6.44 -36.82 -0.24 -4.62 16 19 S 0.28 2.96 19.74 -107.50 -2.12 0.84 16 20 C -0.22 -1.90 10.91 29.15 0.32 -1.59 16 21 C -0.18 -1.77 10.15 -41.35 -0.42 -2.19 16 22 C 0.16 2.09 7.48 -40.24 -0.30 1.79 16 23 F -0.11 -1.63 16.42 2.25 0.04 -1.60 16 24 C 0.12 1.68 7.97 -3.18 -0.03 1.65 16 25 C 0.16 2.99 5.71 -3.81 -0.02 2.97 16 26 H 0.27 7.70 6.77 -40.82 -0.28 7.42 16 27 H 0.08 1.97 6.23 -51.93 -0.32 1.64 16 28 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.00 7.37 -51.93 -0.38 0.62 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.77 8.02 -51.93 -0.42 0.35 16 33 H 0.09 1.32 7.97 -51.93 -0.41 0.91 16 34 H 0.08 1.16 5.66 -51.92 -0.29 0.86 16 35 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.10 7.78 -51.93 -0.40 0.69 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -31.13 339.06 -8.99 -40.12 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.09 Total: -0.83 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.48 Total: -2.43 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.44 Total: -49.24 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.10 Total: 18.58 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.12 Total: 0.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.13 -8.99 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981746248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.095 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds