Wall clock time and date at job start Tue Mar 31 2020 13:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46845 * 239.99713 * 3 2 1 5 5 H 1.48498 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47009 * 119.99768 * 3 2 1 7 7 C 1.38813 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 155.05345 * 7 2 1 9 9 N 1.36936 * 119.99974 * 335.06110 * 7 2 1 10 10 C 1.46896 * 120.69032 * 331.85629 * 9 7 2 11 11 C 1.52673 * 109.34236 * 235.31219 * 10 9 7 12 12 C 1.53177 * 109.42917 * 303.76841 * 11 10 9 13 13 C 1.52635 * 109.35688 * 58.92917 * 12 11 10 14 14 C 1.53461 * 113.68276 * 74.05615 * 13 12 11 15 15 N 1.47665 * 85.96545 * 91.17756 * 14 13 12 16 16 C 1.34785 * 134.45760 * 204.28328 * 15 14 13 17 17 O 1.21731 * 120.00449 * 180.02562 * 16 15 14 18 18 C 1.46290 * 119.99275 * 0.02562 * 16 15 14 19 19 S 1.75819 * 125.47116 * 0.02562 * 18 16 15 20 20 C 1.70596 * 91.60965 * 180.02562 * 19 18 16 21 21 C 1.33730 * 111.04320 * 0.02562 * 20 19 18 22 22 C 1.36932 * 125.46310 * 179.71834 * 18 16 15 23 23 F 1.35106 * 123.40055 * 359.97438 * 22 18 16 24 24 C 1.47676 * 91.09496 * 24.28688 * 15 14 13 25 25 C 1.47122 * 120.68750 * 152.13580 * 9 7 2 26 26 H 0.97000 * 119.99828 * 174.26566 * 1 2 3 27 27 H 1.08995 * 109.53257 * 355.23673 * 10 9 7 28 28 H 1.08996 * 109.53656 * 115.47168 * 10 9 7 29 29 H 1.09000 * 109.55444 * 183.71642 * 11 10 9 30 30 H 1.08999 * 109.34543 * 63.69027 * 11 10 9 31 31 H 1.09000 * 109.49363 * 298.96772 * 12 11 10 32 32 H 1.08998 * 109.49156 * 178.89383 * 12 11 10 33 33 H 1.08996 * 113.79364 * 205.44531 * 14 13 12 34 34 H 1.09009 * 113.79001 * 336.92250 * 14 13 12 35 35 H 1.08006 * 124.47848 * 179.97438 * 20 19 18 36 36 H 1.07997 * 122.45599 * 179.97438 * 21 20 19 37 37 H 1.08996 * 113.79208 * 221.44569 * 24 15 14 38 38 H 1.09005 * 113.89585 * 89.98242 * 24 15 14 39 39 H 1.09001 * 109.63282 * 248.30798 * 25 9 7 40 40 H 1.09003 * 109.63687 * 8.91545 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0147 -1.2459 -0.3939 9 7 1.4214 -2.3325 0.5011 10 6 0.3968 -2.2426 1.5499 11 6 0.8162 -3.1002 2.7414 12 6 1.0558 -4.5392 2.2741 13 6 2.1425 -4.5487 1.2023 14 6 3.5560 -4.3227 1.7554 15 7 3.6343 -5.7930 1.8679 16 6 4.3505 -6.6448 2.6282 17 8 4.2030 -7.8464 2.5002 18 6 5.3053 -6.1253 3.6072 19 16 5.6315 -4.4245 3.9110 20 6 6.7821 -4.8099 5.1102 21 6 6.8983 -6.1341 5.2562 22 6 6.0840 -6.8855 4.4383 23 9 6.0597 -8.2362 4.4509 24 6 2.6134 -5.9563 0.8134 25 6 1.8060 -3.6627 0.0039 26 1 -0.4850 -0.8359 -0.0839 27 1 0.2915 -1.2056 1.8685 28 1 -0.5552 -2.6042 1.1615 29 1 0.0283 -3.0888 3.4945 30 1 1.7349 -2.6991 3.1694 31 1 0.1331 -4.9456 1.8601 32 1 1.3743 -5.1480 3.1203 33 1 4.2499 -3.8996 1.0292 34 1 3.5752 -3.8067 2.7155 35 1 7.3431 -4.0808 5.6760 36 1 7.5770 -6.5814 5.9673 37 1 1.8839 -6.7381 1.0249 38 1 3.0252 -6.0196 -0.1939 39 1 0.9770 -4.0992 -0.5532 40 1 2.6791 -3.5737 -0.6426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981746248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:46 Heat of formation + Delta-G solvation = -5.065013 kcal Electronic energy + Delta-G solvation = -25614.807694 eV Core-core repulsion = 21857.934369 eV Total energy + Delta-G solvation = -3756.873325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.04348 -41.97555 -39.82853 -38.30305 -37.62334 -34.57828 -32.45590 -32.00328 -30.54134 -27.54620 -27.46997 -27.05429 -25.54086 -24.01150 -22.70027 -21.65768 -20.70776 -19.46279 -19.24063 -19.16155 -18.00315 -17.50705 -17.26302 -16.71429 -16.31870 -16.09846 -15.86788 -15.46098 -15.40460 -15.23790 -15.01104 -14.92114 -14.68426 -14.12822 -13.97375 -13.59518 -13.43935 -13.29519 -13.02384 -12.96619 -12.71100 -12.48524 -12.22854 -11.90568 -11.87147 -11.74940 -11.63649 -11.32789 -11.18299 -11.02904 -10.36511 -10.20947 -9.81330 -9.55323 -8.83500 -8.14513 -5.30654 -0.76807 0.23312 0.74435 1.08392 1.57253 1.66104 1.72109 1.90192 1.90450 2.71984 3.10306 3.18323 3.27124 3.37217 3.64942 3.74084 3.81916 3.91829 4.17980 4.25981 4.27647 4.33770 4.42997 4.47152 4.56002 4.56537 4.68872 4.73956 4.80557 4.88129 4.89812 5.01720 5.04676 5.16341 5.19251 5.24919 5.36479 5.51651 5.94176 6.45145 6.48753 6.85556 7.13329 7.86041 8.31452 9.10765 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003840 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.706394 B = 7290.276250 C = 8233.523022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.074 4.074 3 Si 1.108 2.892 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.346 4.346 8 H 0.058 0.942 9 N -0.610 5.610 10 C 0.155 3.845 11 C -0.124 4.124 12 C -0.079 4.079 13 C -0.093 4.093 14 C 0.118 3.882 15 N -0.635 5.635 16 C 0.604 3.396 17 O -0.579 6.579 18 C -0.351 4.351 19 S 0.300 5.700 20 C -0.193 4.193 21 C -0.187 4.187 22 C 0.143 3.857 23 F -0.125 7.125 24 C 0.121 3.879 25 C 0.164 3.836 26 H 0.254 0.746 27 H 0.046 0.954 28 H 0.002 0.998 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.220 0.780 36 H 0.183 0.817 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.021 0.979 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 -7.753 10.596 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.270 4.270 3 Si 0.934 3.066 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.476 4.476 8 H 0.075 0.925 9 N -0.334 5.334 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.116 4.116 13 C -0.095 4.095 14 C -0.004 4.004 15 N -0.369 5.369 16 C 0.396 3.604 17 O -0.462 6.462 18 C -0.472 4.472 19 S 0.567 5.433 20 C -0.331 4.331 21 C -0.217 4.217 22 C 0.107 3.893 23 F -0.104 7.104 24 C -0.001 4.001 25 C 0.038 3.962 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.200 0.800 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.039 0.961 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.185 -5.528 10.106 16.768 hybrid contribution 0.359 -3.447 0.208 3.472 sum 12.544 -8.975 10.314 18.555 Atomic orbital electron populations 1.70899 1.07757 1.29476 1.50761 1.27006 0.96481 1.04613 0.98941 0.82942 0.73893 0.72451 0.77363 1.20421 1.22615 1.20154 1.20191 0.97330 0.89302 1.40729 0.92456 1.44290 1.46471 1.01634 1.41041 1.20695 0.89790 0.98205 0.88408 1.21842 1.01451 0.95172 0.97824 1.21084 0.97248 0.96619 0.96690 1.22388 0.94772 0.94482 0.97862 1.23424 0.96396 0.78715 1.01889 1.49986 1.40745 1.08555 1.37593 1.16651 0.78865 0.84758 0.80174 1.90819 1.68422 1.15855 1.71082 1.24590 1.11159 1.01458 1.10027 1.83591 1.31897 0.97678 1.30117 1.25852 1.03331 1.00256 1.03679 1.20001 1.04072 0.93518 1.04104 1.17472 0.97306 0.77696 0.96803 1.91510 1.95156 1.28476 1.95262 1.23323 0.88164 0.96975 0.91614 1.20851 0.98041 0.84735 0.92526 0.93563 0.93583 0.98029 0.90985 0.92198 0.91510 0.91902 0.88203 0.89267 0.76293 0.79993 0.89685 0.87929 0.96083 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.97 12.38 21.65 0.27 -54.70 16 2 C -0.07 -3.92 4.69 84.86 0.40 -3.53 16 3 Si 1.11 47.54 29.99 68.60 2.06 49.60 16 4 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.35 -17.47 9.50 84.03 0.80 -16.67 16 8 H 0.06 2.84 7.94 -2.91 -0.02 2.82 16 9 N -0.61 -27.21 2.86 -700.45 -2.00 -29.21 16 10 C 0.15 6.65 4.62 86.20 0.40 7.05 16 11 C -0.12 -4.06 5.99 30.54 0.18 -3.87 16 12 C -0.08 -2.29 5.02 30.53 0.15 -2.14 16 13 C -0.09 -2.69 0.87 -52.04 -0.05 -2.74 16 14 C 0.12 3.17 6.27 86.31 0.54 3.72 16 15 N -0.64 -18.36 3.45 -848.51 -2.93 -21.29 16 16 C 0.60 19.98 8.00 86.33 0.69 20.67 16 17 O -0.58 -23.56 16.86 -4.45 -0.07 -23.64 16 18 C -0.35 -9.52 6.44 24.06 0.15 -9.36 16 19 S 0.30 5.47 19.74 -56.49 -1.12 4.35 16 20 C -0.19 -2.44 10.91 66.80 0.73 -1.71 16 21 C -0.19 -3.07 10.15 21.12 0.21 -2.86 16 22 C 0.14 3.68 7.48 21.84 0.16 3.85 16 23 F -0.13 -3.87 16.42 44.97 0.74 -3.13 16 24 C 0.12 3.25 7.97 86.30 0.69 3.94 16 25 C 0.16 5.89 5.71 86.19 0.49 6.38 16 26 H 0.25 15.07 6.77 -92.71 -0.63 14.44 16 27 H 0.05 2.29 6.23 -2.39 -0.01 2.28 16 28 H 0.00 0.08 7.94 -2.39 -0.02 0.06 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 1.95 7.37 -2.39 -0.02 1.93 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.73 8.02 -2.39 -0.02 1.71 16 33 H 0.10 2.60 7.97 -2.39 -0.02 2.58 16 34 H 0.09 2.30 5.66 -2.38 -0.01 2.28 16 35 H 0.22 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 38 H 0.10 2.46 8.09 -2.38 -0.02 2.44 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 2.21 7.78 -2.39 -0.02 2.19 16 Total: -1.00 -69.85 339.06 3.71 -66.14 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.20 Total: 9.16 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.56 Total: 2.72 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -4.66 Total: -105.20 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.74 Total: -3.13 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.06 Total: 49.60 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.12 Total: 4.35 kcal Total: -69.85 3.71 -66.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981746248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.074 kcal (2) G-P(sol) polarization free energy of solvation -69.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds