Wall clock time and date at job start Tue Mar 31 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31926 * 119.02220 * 2 1 4 4 C 1.32127 * 121.06081 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.12331 * 359.97438 * 4 3 2 6 6 Cl 1.73598 * 120.88352 * 180.02562 * 5 4 3 7 7 C 1.39628 * 118.22817 * 0.02562 * 5 4 3 8 8 C 1.48363 * 120.56506 * 179.97438 * 7 5 4 9 9 O 1.21488 * 119.99773 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00074 * 179.97438 * 8 7 5 11 11 C 1.47425 * 125.65236 * 359.97438 * 10 8 7 12 12 C 1.54904 * 104.83527 * 155.90136 * 11 10 8 13 13 C 1.55164 * 101.57948 * 37.01579 * 12 11 10 14 14 H 1.08994 * 110.72477 * 83.03349 * 13 12 11 15 15 N 1.46505 * 110.71893 * 206.13228 * 13 12 11 16 16 C 1.36931 * 119.99788 * 273.54335 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.47027 * 125.64938 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.88206 * 300.44516 * 24 10 8 26 26 C 1.53001 * 109.88053 * 61.60659 * 24 10 8 27 27 N 1.31525 * 119.01521 * 180.29778 * 2 1 3 28 28 H 1.08998 * 109.46804 * 89.99649 * 1 2 3 29 29 H 1.08995 * 109.47539 * 210.00129 * 1 2 3 30 30 H 1.09004 * 109.46852 * 330.00339 * 1 2 3 31 31 H 1.07999 * 120.44048 * 180.02562 * 4 3 2 32 32 H 1.09007 * 110.36240 * 37.06987 * 11 10 8 33 33 H 1.08992 * 110.36804 * 274.74840 * 11 10 8 34 34 H 1.08997 * 111.00781 * 278.93595 * 12 11 10 35 35 H 1.09003 * 111.00340 * 155.08434 * 12 11 10 36 36 H 0.97000 * 119.99792 * 93.54129 * 15 13 12 37 37 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.47085 * 177.81034 * 26 24 10 39 39 H 1.08996 * 109.47173 * 297.80686 * 26 24 10 40 40 H 1.08994 * 109.46996 * 57.81012 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0112 -0.0005 6 17 5.9227 0.0197 -0.0005 7 6 3.4757 -1.1905 -0.0005 8 6 4.1910 -2.4903 -0.0011 9 8 5.4057 -2.5151 -0.0011 10 7 3.4934 -3.6434 -0.0006 11 6 2.0237 -3.7585 0.0011 12 6 1.7343 -5.1521 -0.6103 13 6 2.8979 -5.9961 -0.0263 14 1 2.6582 -6.3393 0.9801 15 7 3.2039 -7.1317 -0.9000 16 6 2.5141 -8.3066 -0.7625 17 1 1.7443 -8.3961 -0.0103 18 6 2.8001 -9.3806 -1.5942 19 7 3.7378 -9.2713 -2.5112 20 14 1.8539 -10.9809 -1.4118 21 1 0.4076 -10.7291 -1.6354 22 1 2.3460 -11.9635 -2.4105 23 1 2.0563 -11.5225 -0.0440 24 6 4.0720 -4.9950 -0.0005 25 1 4.6951 -5.1316 -0.8844 26 6 4.9063 -5.2038 1.2650 27 7 2.1449 -1.1502 -0.0060 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 3.9812 2.1506 -0.0001 32 1 1.5811 -2.9751 -0.6142 33 1 1.6400 -3.7041 1.0198 34 1 1.7833 -5.1191 -1.6987 35 1 0.7693 -5.5328 -0.2757 36 1 3.8950 -7.0511 -1.5759 37 1 3.9379 -10.0220 -3.0921 38 1 5.2999 -6.2201 1.2771 39 1 5.7332 -4.4938 1.2763 40 1 4.2801 -5.0462 2.1430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987138154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:16 Heat of formation + Delta-G solvation = 23.546770 kcal Electronic energy + Delta-G solvation = -25264.610303 eV Core-core repulsion = 21526.853933 eV Total energy + Delta-G solvation = -3737.756370 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.57822 -41.04406 -38.92457 -37.79822 -36.00909 -35.24882 -34.12842 -33.25623 -32.25394 -30.82506 -29.40605 -27.12087 -26.77784 -25.04974 -24.31790 -23.51295 -21.73635 -20.83664 -19.49077 -19.02549 -18.33251 -17.63766 -17.32543 -16.89974 -16.57704 -16.33211 -15.82888 -15.42652 -15.38411 -14.81075 -14.70507 -14.51706 -14.08541 -13.96624 -13.62301 -13.34115 -13.26621 -13.17719 -12.94958 -12.85560 -12.70478 -12.62028 -12.50958 -12.29054 -12.20645 -12.16591 -12.02301 -11.72077 -11.60816 -11.27005 -10.89767 -10.37170 -10.26223 -9.70998 -9.01176 -7.92433 -5.22464 -0.90747 -0.43766 0.79789 1.50236 1.51918 1.53344 1.57731 1.60164 2.44459 2.52783 2.59746 2.80350 3.07314 3.34687 3.40010 3.64744 3.75507 3.82338 4.01806 4.17723 4.24336 4.35614 4.42525 4.53528 4.65986 4.71137 4.75266 4.81595 4.86460 5.02475 5.05608 5.20711 5.22836 5.27307 5.31723 5.43091 5.46434 5.56113 6.27127 6.35183 6.63682 6.86980 7.34234 8.05651 8.29939 9.30883 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.003206 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.620649 B = 8731.142393 C = 9767.854336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.496 5.496 4 C 0.182 3.818 5 C -0.119 4.119 6 Cl -0.008 7.008 7 C 0.138 3.862 8 C 0.566 3.434 9 O -0.535 6.535 10 N -0.585 5.585 11 C 0.112 3.888 12 C -0.149 4.149 13 C 0.172 3.828 14 H 0.072 0.928 15 N -0.728 5.728 16 C -0.238 4.238 17 H 0.083 0.917 18 C -0.074 4.074 19 N -0.971 5.971 20 Si 0.973 3.027 21 H -0.275 1.275 22 H -0.301 1.301 23 H -0.277 1.277 24 C 0.134 3.866 25 H 0.053 0.947 26 C -0.144 4.144 27 N -0.484 5.484 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.220 0.780 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 24.230 7.810 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.211 5.211 4 C 0.013 3.987 5 C -0.152 4.152 6 Cl 0.021 6.979 7 C -0.010 4.010 8 C 0.352 3.648 9 O -0.411 6.411 10 N -0.317 5.317 11 C -0.009 4.009 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.089 0.911 15 N -0.368 5.368 16 C -0.369 4.369 17 H 0.101 0.899 18 C -0.266 4.266 19 N -0.622 5.622 20 Si 0.802 3.198 21 H -0.201 1.201 22 H -0.227 1.227 23 H -0.203 1.203 24 C 0.030 3.970 25 H 0.071 0.929 26 C -0.202 4.202 27 N -0.202 5.202 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.236 0.764 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.232 24.075 7.879 26.087 hybrid contribution 1.382 -1.206 -0.605 1.931 sum -4.851 22.869 7.274 24.483 Atomic orbital electron populations 1.20832 0.81965 1.05992 1.05601 1.24235 1.00225 0.82383 0.88488 1.68453 1.09097 1.30247 1.13290 1.23980 0.88976 0.97776 0.87937 1.22994 0.89662 0.96201 1.06340 1.98442 1.04837 1.98606 1.96014 1.21378 0.90468 0.93320 0.95793 1.17650 0.86157 0.82498 0.78503 1.90847 1.13005 1.86481 1.50764 1.48429 1.09458 1.04407 1.69423 1.22738 0.77881 0.97843 1.02481 1.23446 1.00633 0.94685 1.00192 1.21423 0.91638 0.86186 0.94534 0.91055 1.42496 1.44161 1.10086 1.40021 1.19579 1.13495 0.90109 1.13718 0.89868 1.25563 1.00511 1.01781 0.98793 1.69827 1.35866 1.32155 1.24321 0.85216 0.78275 0.79337 0.76947 1.20116 1.22737 1.20343 1.21727 0.95648 0.81056 0.98598 0.92926 1.21936 0.99863 1.01957 0.96435 1.68650 1.06639 1.31041 1.13829 0.87764 0.88083 0.87641 0.76376 0.87323 0.89766 0.92799 0.89162 0.79690 0.94129 0.91864 0.92463 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.31 71.24 0.73 -0.09 16 2 C 0.31 5.47 7.64 138.79 1.06 6.53 16 3 N -0.50 -8.46 10.31 -187.77 -1.94 -10.40 16 4 C 0.18 2.89 11.14 84.83 0.94 3.83 16 5 C -0.12 -2.61 6.40 22.79 0.15 -2.47 16 6 Cl -0.01 -0.19 26.25 -2.72 -0.07 -0.26 16 7 C 0.14 3.58 6.75 41.98 0.28 3.87 16 8 C 0.57 18.02 7.64 86.94 0.66 18.68 16 9 O -0.53 -19.38 13.19 -3.68 -0.05 -19.42 16 10 N -0.59 -18.39 3.07 -790.85 -2.42 -20.82 16 11 C 0.11 2.97 5.97 86.85 0.52 3.49 16 12 C -0.15 -4.76 6.77 31.99 0.22 -4.55 16 13 C 0.17 6.50 3.11 46.18 0.14 6.65 16 14 H 0.07 2.63 7.83 -2.39 -0.02 2.61 16 15 N -0.73 -35.68 5.25 -317.32 -1.67 -37.35 16 16 C -0.24 -12.64 9.98 84.04 0.84 -11.80 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 20 Si 0.97 45.07 29.55 68.60 2.03 47.09 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C 0.13 4.78 3.21 45.34 0.15 4.93 16 25 H 0.05 2.18 7.69 -2.39 -0.02 2.17 16 26 C -0.14 -4.76 9.10 71.98 0.65 -4.11 16 27 N -0.48 -10.67 6.68 -177.05 -1.18 -11.86 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.11 2.65 5.91 -2.38 -0.01 2.63 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.37 20.12 7.51 -92.71 -0.70 19.42 16 37 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.95 6.90 -2.39 -0.02 1.94 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.74 347.37 2.18 -65.56 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.38 Total: 24.95 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.82 Total: 21.26 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -6.93 Total: -139.18 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.07 Total: -0.26 kcal Total: -67.74 2.18 -65.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987138154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.109 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds