Wall clock time and date at job start Tue Mar 31 2020 13:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31932 * 119.01594 * 2 1 4 4 C 1.32130 * 121.05251 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12897 * 359.72655 * 4 3 2 6 6 Cl 1.73599 * 120.89105 * 180.29071 * 5 4 3 7 7 C 1.39633 * 118.22429 * 0.53760 * 5 4 3 8 8 C 1.48370 * 120.56636 * 179.73413 * 7 5 4 9 9 O 1.21490 * 119.99576 * 359.72300 * 8 7 5 10 10 N 1.34774 * 120.00607 * 179.71768 * 8 7 5 11 11 C 1.47471 * 125.62605 * 0.02562 * 10 8 7 12 12 C 1.54906 * 104.81210 * 204.06544 * 11 10 8 13 13 C 1.55156 * 101.61451 * 323.04512 * 12 11 10 14 14 H 1.09006 * 110.71879 * 276.93547 * 13 12 11 15 15 N 1.46497 * 110.71740 * 153.84824 * 13 12 11 16 16 C 1.36937 * 120.00614 * 86.45573 * 15 13 12 17 17 H 1.08004 * 119.99731 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00477 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99782 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00506 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47232 * 119.99292 * 20 18 16 23 23 H 1.48498 * 109.47214 * 239.99867 * 20 18 16 24 24 C 1.47017 * 125.65425 * 179.97438 * 10 8 7 25 25 H 1.08997 * 110.00847 * 59.48624 * 24 10 8 26 26 C 1.53004 * 109.88216 * 298.39752 * 24 10 8 27 27 N 1.31515 * 119.01693 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46590 * 269.97389 * 1 2 3 29 29 H 1.08994 * 109.46815 * 29.97820 * 1 2 3 30 30 H 1.08999 * 109.46634 * 149.98251 * 1 2 3 31 31 H 1.07998 * 120.43669 * 179.97438 * 4 3 2 32 32 H 1.09008 * 110.34870 * 85.24673 * 11 10 8 33 33 H 1.09001 * 110.40581 * 322.91709 * 11 10 8 34 34 H 1.09002 * 111.00655 * 204.94912 * 12 11 10 35 35 H 1.09002 * 111.00329 * 81.13838 * 12 11 10 36 36 H 0.97005 * 119.99905 * 266.44795 * 15 13 12 37 37 H 0.97006 * 120.00022 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47001 * 302.19111 * 26 24 10 39 39 H 1.09003 * 109.47113 * 62.18696 * 26 24 10 40 40 H 1.09000 * 109.46955 * 182.18279 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1868 0.0114 0.0047 6 17 5.9227 0.0197 0.0119 7 6 3.4758 -1.1904 -0.0012 8 6 4.1912 -2.4902 -0.0019 9 8 5.4058 -2.5150 -0.0024 10 7 3.4936 -3.6434 -0.0019 11 6 2.0234 -3.7580 -0.0017 12 6 1.7349 -5.1521 0.6089 13 6 2.8982 -5.9960 0.0242 14 1 2.6578 -6.3393 -0.9820 15 7 3.2047 -7.1315 0.8977 16 6 2.5150 -8.3066 0.7606 17 1 1.7448 -8.3961 0.0089 18 6 2.8051 -9.3823 1.5886 19 7 3.7434 -9.2730 2.5051 20 14 1.8638 -10.9850 1.4022 21 1 0.8687 -10.8502 0.3081 22 1 2.8118 -12.0809 1.0774 23 1 1.1622 -11.2977 2.6731 24 6 4.0722 -4.9949 -0.0031 25 1 4.6979 -5.1336 0.8786 26 6 4.9050 -5.2033 -1.2697 27 7 2.1450 -1.1501 -0.0005 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3632 -0.8898 -0.5141 31 1 3.9812 2.1507 -0.0009 32 1 1.6388 -3.7030 -1.0202 33 1 1.5812 -2.9751 0.6144 34 1 0.7697 -5.5328 0.2750 35 1 1.7843 -5.1197 1.6973 36 1 3.8963 -7.0511 1.5731 37 1 3.9464 -10.0248 3.0835 38 1 4.2777 -5.0454 -2.1470 39 1 5.7319 -4.4932 -1.2818 40 1 5.2987 -6.2196 -1.2825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987138156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:20 Heat of formation + Delta-G solvation = 42.497326 kcal Electronic energy + Delta-G solvation = -25263.372250 eV Core-core repulsion = 21526.437638 eV Total energy + Delta-G solvation = -3736.934612 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68925 -39.79536 -37.58413 -36.85961 -34.60371 -33.95595 -33.35160 -31.53583 -30.88680 -29.17580 -28.74177 -26.05900 -25.19512 -23.79550 -22.91563 -22.36037 -20.34278 -19.56787 -18.43344 -17.30245 -17.20271 -16.51508 -16.25424 -15.81705 -15.34520 -14.91578 -14.61744 -14.01018 -13.96046 -13.62292 -13.34799 -13.25997 -12.95460 -12.82934 -12.69166 -12.21460 -12.08884 -11.98596 -11.89367 -11.62003 -11.36327 -11.26950 -11.08679 -11.03705 -10.85022 -10.56287 -10.35713 -10.17801 -9.94887 -9.72903 -9.50752 -9.29999 -8.92724 -8.43164 -7.03387 -5.82426 -3.12796 0.02925 0.34980 1.67844 2.60145 2.75955 3.37558 3.40315 3.41412 3.46068 3.48354 3.53775 4.00106 4.25364 4.54073 4.56161 4.88975 5.10816 5.18273 5.19664 5.31586 5.38057 5.41624 5.58495 5.62399 5.72399 5.79610 5.86034 6.03981 6.06943 6.19328 6.25834 6.35883 6.44640 6.58764 6.62048 6.67034 6.93305 7.45717 7.60350 7.65776 8.09854 8.34828 9.46457 10.00794 10.35550 11.39829 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.003206 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.500868 B = 8732.308543 C = 9767.882213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.314 3.686 3 N -0.495 5.495 4 C 0.166 3.834 5 C -0.111 4.111 6 Cl 0.001 6.999 7 C 0.157 3.843 8 C 0.570 3.430 9 O -0.509 6.509 10 N -0.581 5.581 11 C 0.100 3.900 12 C -0.158 4.158 13 C 0.177 3.823 14 H 0.065 0.935 15 N -0.715 5.715 16 C -0.242 4.242 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.127 3.873 25 H 0.081 0.919 26 C -0.155 4.155 27 N -0.473 5.473 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.184 0.816 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 22.374 -6.541 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.210 5.210 4 C -0.002 4.002 5 C -0.144 4.144 6 Cl 0.030 6.970 7 C 0.008 3.992 8 C 0.355 3.645 9 O -0.384 6.384 10 N -0.313 5.313 11 C -0.023 4.023 12 C -0.200 4.200 13 C 0.065 3.935 14 H 0.083 0.917 15 N -0.356 5.356 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.024 3.976 25 H 0.099 0.901 26 C -0.213 4.213 27 N -0.191 5.191 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.201 0.799 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.021 22.184 -6.586 23.488 hybrid contribution 0.744 -0.779 0.256 1.107 sum -3.277 21.405 -6.330 22.561 Atomic orbital electron populations 1.20656 0.84555 1.04790 1.04507 1.23524 0.98781 0.82955 0.89950 1.68310 1.08940 1.30435 1.13354 1.23403 0.89226 0.97355 0.90248 1.22871 0.90008 0.95904 1.05639 1.98445 1.04056 1.98598 1.95923 1.21734 0.89561 0.94250 0.93660 1.17231 0.86221 0.81727 0.79371 1.90871 1.11798 1.85898 1.49813 1.48412 1.08764 1.05061 1.69103 1.22726 0.78964 0.99272 1.01313 1.23621 1.01266 0.93631 1.01457 1.21248 0.90153 0.87005 0.95106 0.91684 1.42353 1.44505 1.09145 1.39571 1.19241 1.13972 0.89405 1.14670 0.90922 1.24763 0.99070 0.98375 0.98473 1.69680 1.33653 1.31321 1.23096 0.86113 0.78982 0.83794 0.77238 1.20483 1.21833 1.21847 1.22004 0.96377 0.80009 0.99244 0.90054 1.22055 1.00030 1.02789 0.96410 1.68711 1.07451 1.29907 1.13004 0.89009 0.89208 0.88915 0.79912 0.91802 0.88665 0.90551 0.90779 0.78009 0.93435 0.93032 0.91893 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.31 3.20 7.64 -157.31 -1.20 2.00 16 3 N -0.50 -4.99 10.31 -10.70 -0.11 -5.10 16 4 C 0.17 1.55 11.14 -17.14 -0.19 1.36 16 5 C -0.11 -1.31 6.40 -38.78 -0.25 -1.56 16 6 Cl 0.00 0.01 26.25 -51.86 -1.36 -1.35 16 7 C 0.16 2.13 6.75 -82.61 -0.56 1.57 16 8 C 0.57 9.15 7.64 -12.09 -0.09 9.06 16 9 O -0.51 -9.09 13.19 5.37 0.07 -9.02 16 10 N -0.58 -9.27 3.07 -163.89 -0.50 -9.77 16 11 C 0.10 1.41 5.97 -2.50 -0.01 1.39 16 12 C -0.16 -2.62 6.77 -24.58 -0.17 -2.79 16 13 C 0.18 3.36 3.11 -66.10 -0.21 3.15 16 14 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 15 N -0.72 -17.20 5.25 -51.66 -0.27 -17.47 16 16 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 20 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.23 3.21 -66.96 -0.21 2.02 16 25 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 26 C -0.15 -2.55 9.10 37.16 0.34 -2.21 16 27 N -0.47 -5.73 6.69 -7.31 -0.05 -5.78 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.10 1.26 5.92 -51.93 -0.31 0.95 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.39 10.02 7.51 -40.82 -0.31 9.72 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.06 6.90 -51.93 -0.36 0.70 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -30.96 347.39 -8.85 -39.81 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.13 Total: 6.61 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -2.43 Total: 6.83 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.21 Total: -64.89 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.36 Total: -1.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.96 -8.85 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987138156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.303 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds