Wall clock time and date at job start Tue Mar 31 2020 13:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31932 * 119.01594 * 2 1 4 4 C 1.32130 * 121.05251 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12897 * 359.72655 * 4 3 2 6 6 Cl 1.73599 * 120.89105 * 180.29071 * 5 4 3 7 7 C 1.39633 * 118.22429 * 0.53760 * 5 4 3 8 8 C 1.48370 * 120.56636 * 179.73413 * 7 5 4 9 9 O 1.21490 * 119.99576 * 359.72300 * 8 7 5 10 10 N 1.34774 * 120.00607 * 179.71768 * 8 7 5 11 11 C 1.47471 * 125.62605 * 0.02562 * 10 8 7 12 12 C 1.54906 * 104.81210 * 204.06544 * 11 10 8 13 13 C 1.55156 * 101.61451 * 323.04512 * 12 11 10 14 14 H 1.09006 * 110.71879 * 276.93547 * 13 12 11 15 15 N 1.46497 * 110.71740 * 153.84824 * 13 12 11 16 16 C 1.36937 * 120.00614 * 86.45573 * 15 13 12 17 17 H 1.08004 * 119.99731 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00477 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99782 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00506 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47232 * 119.99292 * 20 18 16 23 23 H 1.48498 * 109.47214 * 239.99867 * 20 18 16 24 24 C 1.47017 * 125.65425 * 179.97438 * 10 8 7 25 25 H 1.08997 * 110.00847 * 59.48624 * 24 10 8 26 26 C 1.53004 * 109.88216 * 298.39752 * 24 10 8 27 27 N 1.31515 * 119.01693 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46590 * 269.97389 * 1 2 3 29 29 H 1.08994 * 109.46815 * 29.97820 * 1 2 3 30 30 H 1.08999 * 109.46634 * 149.98251 * 1 2 3 31 31 H 1.07998 * 120.43669 * 179.97438 * 4 3 2 32 32 H 1.09008 * 110.34870 * 85.24673 * 11 10 8 33 33 H 1.09001 * 110.40581 * 322.91709 * 11 10 8 34 34 H 1.09002 * 111.00655 * 204.94912 * 12 11 10 35 35 H 1.09002 * 111.00329 * 81.13838 * 12 11 10 36 36 H 0.97005 * 119.99905 * 266.44795 * 15 13 12 37 37 H 0.97006 * 120.00022 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47001 * 302.19111 * 26 24 10 39 39 H 1.09003 * 109.47113 * 62.18696 * 26 24 10 40 40 H 1.09000 * 109.46955 * 182.18279 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1868 0.0114 0.0047 6 17 5.9227 0.0197 0.0119 7 6 3.4758 -1.1904 -0.0012 8 6 4.1912 -2.4902 -0.0019 9 8 5.4058 -2.5150 -0.0024 10 7 3.4936 -3.6434 -0.0019 11 6 2.0234 -3.7580 -0.0017 12 6 1.7349 -5.1521 0.6089 13 6 2.8982 -5.9960 0.0242 14 1 2.6578 -6.3393 -0.9820 15 7 3.2047 -7.1315 0.8977 16 6 2.5150 -8.3066 0.7606 17 1 1.7448 -8.3961 0.0089 18 6 2.8051 -9.3823 1.5886 19 7 3.7434 -9.2730 2.5051 20 14 1.8638 -10.9850 1.4022 21 1 0.8687 -10.8502 0.3081 22 1 2.8118 -12.0809 1.0774 23 1 1.1622 -11.2977 2.6731 24 6 4.0722 -4.9949 -0.0031 25 1 4.6979 -5.1336 0.8786 26 6 4.9050 -5.2033 -1.2697 27 7 2.1450 -1.1501 -0.0005 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3632 -0.8898 -0.5141 31 1 3.9812 2.1507 -0.0009 32 1 1.6388 -3.7030 -1.0202 33 1 1.5812 -2.9751 0.6144 34 1 0.7697 -5.5328 0.2750 35 1 1.7843 -5.1197 1.6973 36 1 3.8963 -7.0511 1.5731 37 1 3.9464 -10.0248 3.0835 38 1 4.2777 -5.0454 -2.1470 39 1 5.7319 -4.4932 -1.2818 40 1 5.2987 -6.2196 -1.2825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987138156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:19 Heat of formation + Delta-G solvation = 23.297668 kcal Electronic energy + Delta-G solvation = -25264.204810 eV Core-core repulsion = 21526.437638 eV Total energy + Delta-G solvation = -3737.767172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57739 -41.04190 -38.92367 -37.79815 -36.01102 -35.24888 -34.12789 -33.25561 -32.25455 -30.82544 -29.40542 -27.12167 -26.78025 -25.05266 -24.31822 -23.51272 -21.73570 -20.83722 -19.49152 -19.02787 -18.33281 -17.64126 -17.32478 -16.89777 -16.57775 -16.33001 -15.82965 -15.41898 -15.39438 -14.80913 -14.70791 -14.51716 -14.08563 -13.96687 -13.62380 -13.33935 -13.26631 -13.17691 -12.97110 -12.85838 -12.75938 -12.61550 -12.50772 -12.28911 -12.17053 -12.12540 -12.00590 -11.71942 -11.60518 -11.27031 -10.92419 -10.37171 -10.26336 -9.71045 -9.01297 -7.92918 -5.22892 -0.90738 -0.43700 0.79794 1.50207 1.51011 1.51958 1.58237 1.61418 2.44481 2.52677 2.59414 2.80401 3.07299 3.34688 3.39928 3.64702 3.75551 3.82244 4.01694 4.17689 4.24356 4.35731 4.42554 4.53459 4.65996 4.71183 4.75316 4.81659 4.86429 5.02404 5.05637 5.20680 5.22937 5.27365 5.31646 5.43133 5.46449 5.56530 6.27028 6.35098 6.63714 6.87019 7.34015 8.05308 8.29450 9.30798 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.003206 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.500868 B = 8732.308543 C = 9767.882213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.496 5.496 4 C 0.182 3.818 5 C -0.119 4.119 6 Cl -0.008 7.008 7 C 0.138 3.862 8 C 0.566 3.434 9 O -0.535 6.535 10 N -0.585 5.585 11 C 0.113 3.887 12 C -0.149 4.149 13 C 0.172 3.828 14 H 0.072 0.928 15 N -0.729 5.729 16 C -0.234 4.234 17 H 0.084 0.916 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.298 1.298 23 H -0.296 1.296 24 C 0.134 3.866 25 H 0.053 0.947 26 C -0.144 4.144 27 N -0.484 5.484 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 24.303 -7.864 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.211 5.211 4 C 0.013 3.987 5 C -0.152 4.152 6 Cl 0.021 6.979 7 C -0.010 4.010 8 C 0.352 3.648 9 O -0.411 6.411 10 N -0.317 5.317 11 C -0.009 4.009 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.090 0.910 15 N -0.368 5.368 16 C -0.366 4.366 17 H 0.102 0.898 18 C -0.267 4.267 19 N -0.622 5.622 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.225 1.225 23 H -0.224 1.224 24 C 0.030 3.970 25 H 0.071 0.929 26 C -0.202 4.202 27 N -0.201 5.201 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.236 0.764 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.297 24.154 -7.954 26.198 hybrid contribution 1.410 -1.220 0.636 1.970 sum -4.887 22.934 -7.319 24.564 Atomic orbital electron populations 1.20833 0.81960 1.05991 1.05602 1.24236 1.00229 0.82385 0.88491 1.68460 1.09093 1.30241 1.13289 1.23979 0.88980 0.97776 0.87942 1.22994 0.89661 0.96202 1.06340 1.98442 1.04842 1.98607 1.96013 1.21380 0.90468 0.93318 0.95795 1.17653 0.86157 0.82502 0.78501 1.90848 1.13009 1.86484 1.50766 1.48434 1.09460 1.04394 1.69420 1.22745 0.77855 0.97819 1.02488 1.23446 1.00635 0.94674 1.00203 1.21421 0.91641 0.86183 0.94536 0.91043 1.42516 1.44098 1.10113 1.40060 1.19650 1.13257 0.89954 1.13702 0.89816 1.25561 1.00525 1.01760 0.98902 1.69844 1.35874 1.31930 1.24557 0.85083 0.77802 0.79655 0.77268 1.18518 1.22513 1.22371 1.21718 0.95647 0.81059 0.98608 0.92927 1.21942 0.99870 1.01957 0.96435 1.68648 1.06633 1.31037 1.13827 0.87762 0.87645 0.88079 0.76382 0.89753 0.87344 0.89141 0.92790 0.79691 0.94154 0.91424 0.92474 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.31 71.24 0.73 -0.09 16 2 C 0.31 5.46 7.64 138.79 1.06 6.52 16 3 N -0.50 -8.45 10.31 -187.76 -1.94 -10.39 16 4 C 0.18 2.89 11.14 84.83 0.94 3.83 16 5 C -0.12 -2.61 6.40 22.79 0.15 -2.47 16 6 Cl -0.01 -0.19 26.25 -2.72 -0.07 -0.26 16 7 C 0.14 3.58 6.75 41.98 0.28 3.86 16 8 C 0.57 18.00 7.64 86.94 0.66 18.66 16 9 O -0.53 -19.36 13.19 -3.69 -0.05 -19.41 16 10 N -0.59 -18.36 3.07 -790.74 -2.42 -20.78 16 11 C 0.11 2.97 5.97 86.85 0.52 3.49 16 12 C -0.15 -4.75 6.77 31.98 0.22 -4.53 16 13 C 0.17 6.49 3.11 46.18 0.14 6.63 16 14 H 0.07 2.63 7.83 -2.38 -0.02 2.61 16 15 N -0.73 -35.61 5.25 -317.34 -1.67 -37.28 16 16 C -0.23 -12.42 9.98 84.03 0.84 -11.59 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 19 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 20 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 24 C 0.13 4.77 3.21 45.34 0.15 4.92 16 25 H 0.05 2.18 7.68 -2.39 -0.02 2.16 16 26 C -0.14 -4.76 9.10 71.98 0.65 -4.11 16 27 N -0.48 -10.65 6.69 -177.04 -1.18 -11.83 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.11 2.63 5.92 -2.39 -0.01 2.62 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.37 20.09 7.51 -92.70 -0.70 19.39 16 37 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.95 6.90 -2.39 -0.02 1.93 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -67.83 347.39 2.18 -65.64 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.38 Total: 24.58 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.82 Total: 21.36 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -6.93 Total: -139.04 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.07 Total: -0.26 kcal Total: -67.83 2.18 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987138156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.942 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds