Wall clock time and date at job start Tue Mar 31 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31936 * 119.02092 * 2 1 4 4 C 1.32133 * 121.05741 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12790 * 359.97438 * 4 3 2 6 6 Cl 1.73598 * 120.88850 * 180.02562 * 5 4 3 7 7 C 1.39633 * 118.22671 * 359.97438 * 5 4 3 8 8 C 1.48364 * 120.56807 * 180.02562 * 7 5 4 9 9 O 1.21492 * 119.99472 * 359.97438 * 8 7 5 10 10 N 1.34769 * 120.00397 * 180.02562 * 8 7 5 11 11 C 1.47421 * 125.65069 * 0.03501 * 10 8 7 12 12 C 1.55117 * 104.94732 * 203.97073 * 11 10 8 13 13 C 1.55154 * 101.48628 * 323.22208 * 12 11 10 14 14 H 1.08996 * 110.72382 * 276.82775 * 13 12 11 15 15 N 1.46502 * 110.72207 * 153.73293 * 13 12 11 16 16 C 1.36930 * 120.00159 * 88.84414 * 15 13 12 17 17 H 1.08000 * 119.99841 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00182 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99887 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00212 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99941 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00122 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00115 * 20 18 16 24 24 C 1.47026 * 125.65021 * 179.97438 * 10 8 7 25 25 H 1.09001 * 109.88064 * 298.39089 * 24 10 8 26 26 C 1.53006 * 110.00919 * 59.48269 * 24 10 8 27 27 N 1.31524 * 119.01945 * 180.29663 * 2 1 3 28 28 H 1.08994 * 109.47500 * 89.99778 * 1 2 3 29 29 H 1.09006 * 109.46948 * 210.00721 * 1 2 3 30 30 H 1.09003 * 109.46807 * 329.99387 * 1 2 3 31 31 H 1.07998 * 120.43527 * 180.02562 * 4 3 2 32 32 H 1.09004 * 110.36825 * 322.93400 * 11 10 8 33 33 H 1.09001 * 110.36822 * 85.14615 * 11 10 8 34 34 H 1.09004 * 111.16781 * 205.13074 * 12 11 10 35 35 H 1.09004 * 110.93475 * 81.21408 * 12 11 10 36 36 H 0.97008 * 119.99482 * 268.84469 * 15 13 12 37 37 H 0.96993 * 120.00105 * 359.97438 * 19 18 16 38 38 H 1.08997 * 109.46731 * 177.88896 * 26 24 10 39 39 H 1.08995 * 109.47159 * 297.88281 * 26 24 10 40 40 H 1.08994 * 109.46908 * 57.89072 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1868 0.0113 -0.0005 6 17 5.9227 0.0197 -0.0005 7 6 3.4758 -1.1904 0.0006 8 6 4.1911 -2.4903 0.0012 9 8 5.4057 -2.5151 0.0003 10 7 3.4935 -3.6434 0.0018 11 6 2.0238 -3.7584 0.0010 12 6 1.7315 -5.1544 0.6109 13 6 2.8979 -5.9961 0.0292 14 1 2.6610 -6.3397 -0.9776 15 7 3.2044 -7.1311 0.9034 16 6 2.5519 -8.3227 0.7324 17 1 1.8116 -8.4259 -0.0471 18 6 2.8426 -9.3983 1.5603 19 7 3.7452 -9.2725 2.5101 20 14 1.9520 -11.0236 1.3276 21 1 2.7111 -11.8720 0.3739 22 1 0.5913 -10.7699 0.7895 23 1 1.8454 -11.7213 2.6341 24 6 4.0721 -4.9950 0.0019 25 1 4.6657 -5.1441 -0.9001 26 6 4.9498 -5.1886 1.2401 27 7 2.1450 -1.1501 -0.0060 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5140 30 1 -0.3633 0.8900 0.5139 31 1 3.9812 2.1507 -0.0001 32 1 1.5815 -2.9747 0.6161 33 1 1.6393 -3.7027 -1.0174 34 1 0.7679 -5.5371 0.2743 35 1 1.7783 -5.1215 1.6994 36 1 3.8696 -7.0383 1.6033 37 1 4.2074 -8.4285 2.6312 38 1 5.3438 -6.2048 1.2508 39 1 5.7764 -4.4787 1.2142 40 1 4.3543 -5.0204 2.1374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987138159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:23 Heat of formation + Delta-G solvation = 49.823208 kcal Electronic energy + Delta-G solvation = -25413.966970 eV Core-core repulsion = 21677.350032 eV Total energy + Delta-G solvation = -3736.616938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72968 -39.89975 -37.72527 -36.91231 -34.77043 -34.16748 -33.38732 -31.63744 -30.79669 -28.81896 -28.76865 -26.06935 -25.17736 -23.85199 -23.16217 -22.53119 -20.37412 -19.21596 -18.39258 -17.66179 -17.36210 -16.55148 -16.22614 -15.80210 -15.40436 -15.28510 -14.73351 -14.25406 -13.96872 -13.67879 -13.46109 -13.33445 -12.92832 -12.80264 -12.63528 -12.28433 -12.14892 -12.02074 -11.84058 -11.66520 -11.63170 -11.34394 -11.09561 -10.88419 -10.65252 -10.46574 -10.24554 -10.07856 -10.00501 -9.54348 -9.33835 -9.23229 -8.93834 -8.49796 -7.10323 -6.15256 -3.16539 -0.01106 0.31363 1.64126 2.55285 2.70709 3.32990 3.37685 3.49527 3.50310 3.54166 3.68167 3.95793 4.21388 4.52311 4.62852 4.85212 5.04053 5.14284 5.15416 5.26825 5.34071 5.38058 5.51793 5.61740 5.65397 5.75108 5.81776 5.94900 6.05612 6.14423 6.21638 6.25361 6.42612 6.53265 6.58859 6.64656 6.87452 7.41905 7.54404 7.76497 8.04165 8.70339 9.15439 10.01892 10.16097 11.32602 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.003231 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.922563 B = 8665.268502 C = 9772.861839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.315 3.685 3 N -0.495 5.495 4 C 0.167 3.833 5 C -0.111 4.111 6 Cl 0.001 6.999 7 C 0.156 3.844 8 C 0.571 3.429 9 O -0.509 6.509 10 N -0.582 5.582 11 C 0.100 3.900 12 C -0.155 4.155 13 C 0.179 3.821 14 H 0.066 0.934 15 N -0.728 5.728 16 C -0.335 4.335 17 H 0.066 0.934 18 C -0.042 4.042 19 N -0.942 5.942 20 Si 1.083 2.917 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.288 1.288 24 C 0.127 3.873 25 H 0.076 0.924 26 C -0.159 4.159 27 N -0.474 5.474 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.374 0.626 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 22.543 -6.079 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.210 5.210 4 C -0.002 4.002 5 C -0.144 4.144 6 Cl 0.030 6.970 7 C 0.007 3.993 8 C 0.355 3.645 9 O -0.383 6.383 10 N -0.314 5.314 11 C -0.023 4.023 12 C -0.197 4.197 13 C 0.067 3.933 14 H 0.084 0.916 15 N -0.373 5.373 16 C -0.466 4.466 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.587 5.587 20 Si 0.914 3.086 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.214 1.214 24 C 0.023 3.977 25 H 0.094 0.906 26 C -0.218 4.218 27 N -0.191 5.191 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.201 0.799 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.211 0.789 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.541 20.892 -5.669 22.119 hybrid contribution 1.299 1.746 -0.431 2.219 sum -3.241 22.638 -6.101 23.669 Atomic orbital electron populations 1.20657 0.84526 1.04854 1.04469 1.23528 0.98788 0.82935 0.89928 1.68315 1.08938 1.30422 1.13303 1.23411 0.89221 0.97360 0.90201 1.22871 0.90017 0.95896 1.05617 1.98445 1.04036 1.98597 1.95920 1.21715 0.89577 0.94215 0.93768 1.17233 0.86217 0.81713 0.79301 1.90870 1.11792 1.85905 1.49748 1.48411 1.08725 1.05028 1.69229 1.22735 0.78989 0.99173 1.01415 1.23616 1.01212 0.93576 1.01249 1.21122 0.90258 0.86832 0.95056 0.91618 1.42658 1.48315 1.08676 1.37646 1.20077 1.19491 0.90311 1.16720 0.91572 1.25789 1.00325 1.02284 0.95626 1.70858 1.26932 1.27417 1.33452 0.83187 0.74646 0.74998 0.75757 1.22279 1.22100 1.21396 1.21964 0.96236 0.80264 0.99193 0.90622 1.22014 0.99822 1.02864 0.97051 1.68708 1.07439 1.29952 1.13019 0.89012 0.88919 0.89169 0.79872 0.88662 0.91682 0.90443 0.91027 0.78887 0.93375 0.90444 0.91740 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.31 36.00 0.37 -0.19 16 2 C 0.31 3.19 7.64 -157.31 -1.20 1.99 16 3 N -0.49 -4.95 10.31 -10.70 -0.11 -5.06 16 4 C 0.17 1.54 11.14 -17.14 -0.19 1.35 16 5 C -0.11 -1.30 6.40 -38.78 -0.25 -1.55 16 6 Cl 0.00 0.01 26.25 -51.86 -1.36 -1.35 16 7 C 0.16 2.11 6.75 -82.61 -0.56 1.55 16 8 C 0.57 9.12 7.63 -12.10 -0.09 9.03 16 9 O -0.51 -9.02 13.06 5.37 0.07 -8.95 16 10 N -0.58 -9.27 3.09 -163.79 -0.51 -9.77 16 11 C 0.10 1.41 5.96 -2.42 -0.01 1.39 16 12 C -0.16 -2.59 6.79 -24.47 -0.17 -2.76 16 13 C 0.18 3.46 3.46 -66.10 -0.23 3.23 16 14 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 15 N -0.73 -17.52 4.98 -51.65 -0.26 -17.77 16 16 C -0.34 -9.08 9.97 -15.06 -0.15 -9.23 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 18 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 19 N -0.94 -28.59 13.70 55.49 0.76 -27.83 16 20 Si 1.08 25.41 29.92 -169.99 -5.09 20.32 16 21 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.13 2.24 3.47 -66.95 -0.23 2.01 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 C -0.16 -2.93 7.94 37.16 0.30 -2.63 16 27 N -0.47 -5.72 6.69 -7.31 -0.05 -5.77 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.10 1.26 5.93 -51.93 -0.31 0.95 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.37 9.26 3.82 -40.82 -0.16 9.11 16 37 H 0.26 7.64 6.77 -40.82 -0.28 7.36 16 38 H 0.08 1.53 6.73 -51.93 -0.35 1.18 16 39 H 0.06 1.17 6.77 -51.93 -0.35 0.82 16 40 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -32.07 341.34 -8.78 -40.85 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.87 Total: 7.31 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.51 Total: 2.89 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.16 Total: -66.21 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.36 Total: -1.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.07 -8.78 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987138159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.674 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds