Wall clock time and date at job start Tue Mar 31 2020 13:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31936 * 119.02092 * 2 1 4 4 C 1.32133 * 121.05741 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12790 * 359.97438 * 4 3 2 6 6 Cl 1.73598 * 120.88850 * 180.02562 * 5 4 3 7 7 C 1.39633 * 118.22671 * 359.97438 * 5 4 3 8 8 C 1.48364 * 120.56807 * 180.02562 * 7 5 4 9 9 O 1.21492 * 119.99472 * 359.97438 * 8 7 5 10 10 N 1.34769 * 120.00397 * 180.02562 * 8 7 5 11 11 C 1.47421 * 125.65069 * 0.03501 * 10 8 7 12 12 C 1.55117 * 104.94732 * 203.97073 * 11 10 8 13 13 C 1.55154 * 101.48628 * 323.22208 * 12 11 10 14 14 H 1.08996 * 110.72382 * 276.82775 * 13 12 11 15 15 N 1.46502 * 110.72207 * 153.73293 * 13 12 11 16 16 C 1.36930 * 120.00159 * 88.84414 * 15 13 12 17 17 H 1.08000 * 119.99841 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00182 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99887 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00212 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99941 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00122 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00115 * 20 18 16 24 24 C 1.47026 * 125.65021 * 179.97438 * 10 8 7 25 25 H 1.09001 * 109.88064 * 298.39089 * 24 10 8 26 26 C 1.53006 * 110.00919 * 59.48269 * 24 10 8 27 27 N 1.31524 * 119.01945 * 180.29663 * 2 1 3 28 28 H 1.08994 * 109.47500 * 89.99778 * 1 2 3 29 29 H 1.09006 * 109.46948 * 210.00721 * 1 2 3 30 30 H 1.09003 * 109.46807 * 329.99387 * 1 2 3 31 31 H 1.07998 * 120.43527 * 180.02562 * 4 3 2 32 32 H 1.09004 * 110.36825 * 322.93400 * 11 10 8 33 33 H 1.09001 * 110.36822 * 85.14615 * 11 10 8 34 34 H 1.09004 * 111.16781 * 205.13074 * 12 11 10 35 35 H 1.09004 * 110.93475 * 81.21408 * 12 11 10 36 36 H 0.97008 * 119.99482 * 268.84469 * 15 13 12 37 37 H 0.96993 * 120.00105 * 359.97438 * 19 18 16 38 38 H 1.08997 * 109.46731 * 177.88896 * 26 24 10 39 39 H 1.08995 * 109.47159 * 297.88281 * 26 24 10 40 40 H 1.08994 * 109.46908 * 57.89072 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1868 0.0113 -0.0005 6 17 5.9227 0.0197 -0.0005 7 6 3.4758 -1.1904 0.0006 8 6 4.1911 -2.4903 0.0012 9 8 5.4057 -2.5151 0.0003 10 7 3.4935 -3.6434 0.0018 11 6 2.0238 -3.7584 0.0010 12 6 1.7315 -5.1544 0.6109 13 6 2.8979 -5.9961 0.0292 14 1 2.6610 -6.3397 -0.9776 15 7 3.2044 -7.1311 0.9034 16 6 2.5519 -8.3227 0.7324 17 1 1.8116 -8.4259 -0.0471 18 6 2.8426 -9.3983 1.5603 19 7 3.7452 -9.2725 2.5101 20 14 1.9520 -11.0236 1.3276 21 1 2.7111 -11.8720 0.3739 22 1 0.5913 -10.7699 0.7895 23 1 1.8454 -11.7213 2.6341 24 6 4.0721 -4.9950 0.0019 25 1 4.6657 -5.1441 -0.9001 26 6 4.9498 -5.1886 1.2401 27 7 2.1450 -1.1501 -0.0060 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5140 30 1 -0.3633 0.8900 0.5139 31 1 3.9812 2.1507 -0.0001 32 1 1.5815 -2.9747 0.6161 33 1 1.6393 -3.7027 -1.0174 34 1 0.7679 -5.5371 0.2743 35 1 1.7783 -5.1215 1.6994 36 1 3.8696 -7.0383 1.6033 37 1 4.2074 -8.4285 2.6312 38 1 5.3438 -6.2048 1.2508 39 1 5.7764 -4.4787 1.2142 40 1 4.3543 -5.0204 2.1374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987138159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:22 Heat of formation + Delta-G solvation = 30.038369 kcal Electronic energy + Delta-G solvation = -25414.824905 eV Core-core repulsion = 21677.350032 eV Total energy + Delta-G solvation = -3737.474873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.61860 -41.16464 -39.09173 -37.83786 -36.33758 -35.30834 -34.16138 -33.33924 -32.22343 -30.52010 -29.43560 -27.10993 -26.71667 -25.48602 -24.40565 -23.71347 -21.62630 -20.56331 -19.56723 -19.36903 -18.53715 -17.52029 -17.30738 -16.99467 -16.91691 -16.52720 -15.86025 -15.74976 -15.39668 -14.89456 -14.69953 -14.51536 -14.07392 -13.95649 -13.84030 -13.44402 -13.28721 -13.24417 -13.02100 -12.89360 -12.69157 -12.59833 -12.42647 -12.29094 -12.14915 -11.99575 -11.83213 -11.71633 -11.37397 -11.21800 -10.91157 -10.40433 -10.30928 -9.78040 -9.11741 -8.36819 -5.31987 -0.94319 -0.46719 0.76704 1.46590 1.52231 1.61645 1.71702 1.85419 2.40807 2.49523 2.73598 2.77377 3.03184 3.31207 3.39763 3.58700 3.62810 3.76916 3.84741 4.06839 4.19989 4.27110 4.29849 4.44443 4.52784 4.66941 4.72941 4.75608 4.78880 4.86792 5.00684 5.06885 5.15836 5.21182 5.25094 5.37021 5.41669 5.63708 6.28005 6.50866 6.60092 6.81453 7.09085 7.99374 8.10991 9.14578 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.003231 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.922563 B = 8665.268502 C = 9772.861839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.313 3.687 3 N -0.496 5.496 4 C 0.183 3.817 5 C -0.118 4.118 6 Cl -0.007 7.007 7 C 0.137 3.863 8 C 0.567 3.433 9 O -0.533 6.533 10 N -0.585 5.585 11 C 0.113 3.887 12 C -0.144 4.144 13 C 0.171 3.829 14 H 0.067 0.933 15 N -0.743 5.743 16 C -0.328 4.328 17 H 0.073 0.927 18 C -0.104 4.104 19 N -0.977 5.977 20 Si 1.130 2.870 21 H -0.287 1.287 22 H -0.269 1.269 23 H -0.297 1.297 24 C 0.134 3.866 25 H 0.073 0.927 26 C -0.146 4.146 27 N -0.484 5.484 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.220 0.780 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.367 0.633 37 H 0.242 0.758 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 24.520 -7.225 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.210 5.210 4 C 0.014 3.986 5 C -0.151 4.151 6 Cl 0.022 6.978 7 C -0.010 4.010 8 C 0.353 3.647 9 O -0.409 6.409 10 N -0.317 5.317 11 C -0.009 4.009 12 C -0.185 4.185 13 C 0.062 3.938 14 H 0.085 0.915 15 N -0.387 5.387 16 C -0.459 4.459 17 H 0.091 0.909 18 C -0.295 4.295 19 N -0.626 5.626 20 Si 0.955 3.045 21 H -0.214 1.214 22 H -0.194 1.194 23 H -0.224 1.224 24 C 0.030 3.970 25 H 0.091 0.909 26 C -0.204 4.204 27 N -0.202 5.202 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.237 0.763 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.203 0.797 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.646 22.924 -6.857 24.834 hybrid contribution 1.921 1.291 -0.125 2.318 sum -4.724 24.215 -6.982 25.641 Atomic orbital electron populations 1.20831 0.81960 1.05854 1.05736 1.24234 1.00223 0.82372 0.88482 1.68463 1.09105 1.30214 1.13236 1.23991 0.88967 0.97794 0.87887 1.22993 0.89686 0.96175 1.06284 1.98443 1.04785 1.98605 1.96004 1.21361 0.90474 0.93289 0.95922 1.17647 0.86158 0.82447 0.78400 1.90848 1.12941 1.86465 1.50641 1.48412 1.09370 1.04320 1.69616 1.22746 0.77930 0.97676 1.02527 1.23432 1.00377 0.94628 1.00086 1.21307 0.91941 0.86213 0.94384 0.91473 1.42826 1.48194 1.09362 1.38311 1.20431 1.18588 0.91134 1.15726 0.90934 1.27162 1.00932 1.05817 0.95619 1.70971 1.29000 1.27028 1.35552 0.82585 0.74939 0.71534 0.75411 1.21449 1.19415 1.22364 1.21695 0.95470 0.81304 0.98503 0.90903 1.21843 0.99762 1.01574 0.97198 1.68642 1.06648 1.31088 1.13859 0.87413 0.88342 0.87736 0.76328 0.87222 0.89785 0.89315 0.92838 0.79703 0.94718 0.92336 0.91699 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.31 71.23 0.73 -0.09 16 2 C 0.31 5.43 7.64 138.79 1.06 6.49 16 3 N -0.50 -8.36 10.31 -187.77 -1.94 -10.29 16 4 C 0.18 2.85 11.14 84.83 0.94 3.80 16 5 C -0.12 -2.57 6.40 22.79 0.15 -2.42 16 6 Cl -0.01 -0.17 26.25 -2.72 -0.07 -0.24 16 7 C 0.14 3.52 6.75 41.98 0.28 3.80 16 8 C 0.57 17.83 7.63 86.94 0.66 18.50 16 9 O -0.53 -18.97 13.06 -3.69 -0.05 -19.02 16 10 N -0.58 -18.24 3.09 -790.42 -2.44 -20.68 16 11 C 0.11 2.99 5.96 86.93 0.52 3.51 16 12 C -0.14 -4.67 6.79 32.06 0.22 -4.45 16 13 C 0.17 6.60 3.46 46.18 0.16 6.76 16 14 H 0.07 2.57 8.11 -2.39 -0.02 2.55 16 15 N -0.74 -36.31 4.98 -317.34 -1.58 -37.89 16 16 C -0.33 -17.77 9.97 84.03 0.84 -16.93 16 17 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 18 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 19 N -0.98 -60.87 13.70 21.65 0.30 -60.57 16 20 Si 1.13 51.12 29.92 68.60 2.05 53.17 16 21 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 24 C 0.13 4.79 3.47 45.34 0.16 4.94 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 C -0.15 -5.55 7.94 71.98 0.57 -4.98 16 27 N -0.48 -10.61 6.69 -177.05 -1.18 -11.79 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.11 2.66 5.93 -2.38 -0.01 2.64 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.37 18.89 3.82 -92.70 -0.35 18.53 16 37 H 0.24 15.12 6.77 -92.71 -0.63 14.50 16 38 H 0.06 2.43 6.73 -2.39 -0.02 2.42 16 39 H 0.06 2.44 6.77 -2.39 -0.02 2.42 16 40 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 Total: -1.00 -70.01 341.34 2.72 -67.28 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.87 Total: 26.59 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.76 Total: 13.45 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -6.84 Total: -141.22 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.07 Total: -0.24 kcal Total: -70.01 2.72 -67.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987138159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.319 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds