Wall clock time and date at job start Tue Mar 31 2020 13:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31935 * 119.02030 * 2 1 4 4 C 1.32131 * 121.06063 * 179.97438 * 3 2 1 5 5 C 1.38992 * 119.12107 * 359.74852 * 4 3 2 6 6 Cl 1.73601 * 120.88380 * 180.25152 * 5 4 3 7 7 C 1.39634 * 118.22898 * 0.47269 * 5 4 3 8 8 C 1.48366 * 120.56153 * 179.80722 * 7 5 4 9 9 O 1.21486 * 120.00127 * 359.71641 * 8 7 5 10 10 N 1.34783 * 119.99610 * 179.72025 * 8 7 5 11 11 C 1.47421 * 125.65022 * 359.96897 * 10 8 7 12 12 C 1.54907 * 104.83266 * 155.90930 * 11 10 8 13 13 C 1.55157 * 101.58315 * 37.01069 * 12 11 10 14 14 H 1.09006 * 110.72092 * 83.03177 * 13 12 11 15 15 N 1.46496 * 110.72451 * 206.13777 * 13 12 11 16 16 C 1.36945 * 119.99718 * 273.54503 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47022 * 125.64548 * 180.02562 * 10 8 7 25 25 H 1.08993 * 109.88613 * 61.60307 * 24 10 8 26 26 C 1.53005 * 109.88002 * 300.43215 * 24 10 8 27 27 N 1.31517 * 119.01951 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47250 * 270.01811 * 1 2 3 29 29 H 1.09001 * 109.47646 * 30.01913 * 1 2 3 30 30 H 1.09003 * 109.47610 * 150.02059 * 1 2 3 31 31 H 1.07993 * 120.43643 * 179.97438 * 4 3 2 32 32 H 1.09004 * 110.36554 * 37.07463 * 11 10 8 33 33 H 1.08999 * 110.37121 * 274.74666 * 11 10 8 34 34 H 1.08999 * 111.00650 * 278.93793 * 12 11 10 35 35 H 1.08997 * 111.03886 * 155.09668 * 12 11 10 36 36 H 0.96996 * 120.00499 * 93.54234 * 15 13 12 37 37 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.08991 * 109.47376 * 302.19604 * 26 24 10 39 39 H 1.09004 * 109.46838 * 62.19960 * 26 24 10 40 40 H 1.08997 * 109.47235 * 182.18963 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 0.0005 5 6 4.1867 0.0114 0.0064 6 17 5.9227 0.0198 0.0138 7 6 3.4757 -1.1904 0.0014 8 6 4.1912 -2.4902 0.0029 9 8 5.4058 -2.5150 0.0034 10 7 3.4935 -3.6434 0.0038 11 6 2.0238 -3.7584 0.0039 12 6 1.7351 -5.1526 -0.6064 13 6 2.8981 -5.9961 -0.0203 14 1 2.6572 -6.3382 0.9863 15 7 3.2051 -7.1324 -0.8924 16 6 2.5152 -8.3073 -0.7546 17 1 1.7452 -8.3963 -0.0026 18 6 2.8057 -9.3838 -1.5812 19 7 3.7446 -9.2756 -2.4974 20 14 1.8652 -10.9868 -1.3927 21 1 2.5687 -11.8621 -0.4211 22 1 0.4941 -10.7010 -0.8991 23 1 1.7852 -11.6713 -2.7080 24 6 4.0722 -4.9949 0.0059 25 1 4.6655 -5.1427 0.9082 26 6 4.9480 -5.1878 -1.2338 27 7 2.1450 -1.1501 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9811 2.1507 0.0001 32 1 1.5819 -2.9756 -0.6127 33 1 1.6389 -3.7030 1.0222 34 1 1.7855 -5.1208 -1.6947 35 1 0.7698 -5.5335 -0.2730 36 1 3.8970 -7.0526 -1.5676 37 1 3.9479 -10.0280 -3.0748 38 1 4.3513 -5.0190 -2.1301 39 1 5.7747 -4.4778 -1.2086 40 1 5.3422 -6.2039 -1.2457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987138161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:25 Heat of formation + Delta-G solvation = 30.943980 kcal Electronic energy + Delta-G solvation = -25369.726886 eV Core-core repulsion = 21632.291283 eV Total energy + Delta-G solvation = -3737.435603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57707 -41.08982 -38.99228 -37.79754 -36.04264 -35.21623 -34.12494 -33.31343 -32.12487 -30.67455 -29.40330 -27.11674 -26.75768 -25.45098 -24.31561 -23.64095 -21.48644 -20.42776 -19.45407 -19.31719 -18.43353 -17.42884 -17.27397 -16.92444 -16.69217 -16.32814 -16.00447 -15.59361 -15.35712 -14.79784 -14.68611 -14.47256 -14.01643 -13.88066 -13.64030 -13.27880 -13.24356 -13.10594 -12.92543 -12.89780 -12.85798 -12.69817 -12.52687 -12.24845 -12.14609 -12.05388 -12.00323 -11.65014 -11.55873 -11.24156 -10.89711 -10.36768 -10.26334 -9.70543 -8.99498 -7.92206 -5.21293 -0.90276 -0.43352 0.80216 1.50484 1.51969 1.52250 1.59021 1.61154 2.44792 2.53377 2.60004 2.80650 3.07827 3.35129 3.40203 3.66461 3.76896 3.86055 3.95026 4.19511 4.24017 4.38103 4.41646 4.56327 4.65197 4.71488 4.75539 4.81698 4.86778 4.96163 5.10192 5.19777 5.25603 5.27449 5.31012 5.44281 5.49114 5.56759 6.29194 6.35530 6.64097 6.87687 7.36851 8.09756 8.33800 9.31492 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.003225 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.169659 B = 8679.247479 C = 9792.393318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.496 5.496 4 C 0.182 3.818 5 C -0.119 4.119 6 Cl -0.008 7.008 7 C 0.138 3.862 8 C 0.567 3.433 9 O -0.533 6.533 10 N -0.585 5.585 11 C 0.112 3.888 12 C -0.145 4.145 13 C 0.166 3.834 14 H 0.069 0.931 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.082 0.918 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.290 1.290 22 H -0.266 1.266 23 H -0.300 1.300 24 C 0.135 3.865 25 H 0.074 0.926 26 C -0.144 4.144 27 N -0.484 5.484 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.220 0.780 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.381 0.619 37 H 0.250 0.750 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 24.392 6.871 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.211 5.211 4 C 0.013 3.987 5 C -0.152 4.152 6 Cl 0.021 6.979 7 C -0.010 4.010 8 C 0.353 3.647 9 O -0.410 6.410 10 N -0.317 5.317 11 C -0.010 4.010 12 C -0.186 4.186 13 C 0.056 3.944 14 H 0.087 0.913 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.100 0.900 18 C -0.267 4.267 19 N -0.622 5.622 20 Si 0.802 3.198 21 H -0.217 1.217 22 H -0.190 1.190 23 H -0.227 1.227 24 C 0.032 3.968 25 H 0.092 0.908 26 C -0.203 4.203 27 N -0.202 5.202 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.236 0.764 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.217 0.783 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.097 24.242 6.938 25.942 hybrid contribution 1.343 -1.258 -0.476 1.901 sum -4.754 22.984 6.462 24.344 Atomic orbital electron populations 1.20828 0.81984 1.05839 1.05717 1.24229 1.00216 0.82390 0.88514 1.68457 1.09107 1.30249 1.13294 1.23978 0.88975 0.97787 0.87955 1.22995 0.89670 0.96195 1.06325 1.98442 1.04818 1.98607 1.96010 1.21388 0.90459 0.93351 0.95778 1.17637 0.86154 0.82460 0.78482 1.90845 1.12961 1.86464 1.50705 1.48445 1.09407 1.04382 1.69468 1.22728 0.77928 0.97848 1.02476 1.23418 1.00478 0.94555 1.00181 1.21382 0.91888 0.86486 0.94598 0.91300 1.42853 1.44400 1.09761 1.40461 1.19656 1.13399 0.90199 1.13719 0.90018 1.25539 1.00565 1.01677 0.98908 1.69824 1.35831 1.31941 1.24580 0.85151 0.78675 0.79840 0.76143 1.21731 1.19035 1.22681 1.21685 0.95500 0.81169 0.98490 0.90816 1.21825 0.99634 1.01661 0.97137 1.68645 1.06656 1.31032 1.13821 0.87431 0.87795 0.88312 0.76393 0.87349 0.89785 0.92765 0.89249 0.78308 0.94127 0.93525 0.92027 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.31 71.23 0.73 -0.09 16 2 C 0.31 5.45 7.64 138.79 1.06 6.51 16 3 N -0.50 -8.44 10.31 -187.77 -1.94 -10.38 16 4 C 0.18 2.87 11.14 84.83 0.94 3.82 16 5 C -0.12 -2.60 6.40 22.79 0.15 -2.45 16 6 Cl -0.01 -0.18 26.25 -2.72 -0.07 -0.25 16 7 C 0.14 3.55 6.75 41.98 0.28 3.84 16 8 C 0.57 17.87 7.63 86.94 0.66 18.53 16 9 O -0.53 -19.10 13.05 -3.67 -0.05 -19.14 16 10 N -0.58 -18.23 3.08 -790.84 -2.44 -20.66 16 11 C 0.11 2.94 5.97 86.86 0.52 3.46 16 12 C -0.15 -4.64 6.77 31.99 0.22 -4.42 16 13 C 0.17 6.30 3.46 46.18 0.16 6.46 16 14 H 0.07 2.55 8.12 -2.38 -0.02 2.53 16 15 N -0.73 -35.59 5.02 -317.32 -1.59 -37.18 16 16 C -0.24 -12.68 9.98 84.03 0.84 -11.84 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 20 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 C 0.14 4.81 3.48 45.34 0.16 4.97 16 25 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 26 C -0.14 -5.58 7.95 71.98 0.57 -5.01 16 27 N -0.48 -10.63 6.69 -177.05 -1.18 -11.81 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.11 2.62 5.92 -2.38 -0.01 2.61 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 36 H 0.38 19.98 4.92 -92.71 -0.46 19.52 16 37 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.06 2.35 6.77 -2.38 -0.02 2.33 16 40 H 0.06 2.62 6.67 -2.39 -0.02 2.60 16 Total: -1.00 -67.49 342.98 2.43 -65.05 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.63 Total: 25.60 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.76 Total: 20.06 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -6.87 Total: -138.50 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.07 Total: -0.25 kcal Total: -67.49 2.43 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987138161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.999 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds