Wall clock time and date at job start Tue Mar 31 2020 13:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31927 * 119.01717 * 2 1 4 4 C 1.32134 * 121.05486 * 180.02562 * 3 2 1 5 5 C 1.38991 * 119.12497 * 359.97438 * 4 3 2 6 6 Cl 1.73599 * 120.88363 * 180.02562 * 5 4 3 7 7 C 1.39629 * 118.22937 * 0.02562 * 5 4 3 8 8 C 1.48366 * 120.56553 * 179.97438 * 7 5 4 9 9 O 1.21485 * 119.99712 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99912 * 179.97438 * 8 7 5 11 11 C 1.47425 * 125.65138 * 0.02860 * 10 8 7 12 12 C 1.54908 * 104.92961 * 204.15299 * 11 10 8 13 13 H 1.08999 * 111.00647 * 204.85975 * 12 11 10 14 14 N 1.46505 * 111.00088 * 81.00982 * 12 11 10 15 15 C 1.36935 * 119.99890 * 86.45669 * 14 12 11 16 16 H 1.08001 * 120.00526 * 359.97438 * 15 14 12 17 17 C 1.38818 * 120.00071 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00219 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47213 * 89.99677 * 19 17 15 21 21 H 1.48501 * 109.46787 * 210.00335 * 19 17 15 22 22 H 1.48504 * 109.47057 * 329.99558 * 19 17 15 23 23 C 1.55154 * 101.58289 * 322.93718 * 12 11 10 24 24 C 1.47290 * 125.79121 * 180.02562 * 10 8 7 25 25 H 1.09001 * 109.98500 * 59.43402 * 24 10 8 26 26 C 1.52996 * 109.87458 * 298.35971 * 24 10 8 27 27 N 1.31524 * 119.02023 * 180.29790 * 2 1 3 28 28 H 1.09003 * 109.47362 * 90.00077 * 1 2 3 29 29 H 1.08998 * 109.47440 * 209.99942 * 1 2 3 30 30 H 1.09004 * 109.47259 * 330.00014 * 1 2 3 31 31 H 1.08005 * 120.43894 * 180.02562 * 4 3 2 32 32 H 1.09002 * 110.36696 * 85.25946 * 11 10 8 33 33 H 1.08995 * 110.36608 * 323.04783 * 11 10 8 34 34 H 0.97002 * 120.00176 * 266.45171 * 14 12 11 35 35 H 0.96990 * 119.99830 * 180.02562 * 18 17 15 36 36 H 1.09002 * 110.72290 * 153.86663 * 23 12 11 37 37 H 1.08994 * 110.71922 * 276.96131 * 23 12 11 38 38 H 1.08998 * 109.47192 * 302.15553 * 26 24 10 39 39 H 1.09005 * 109.47110 * 62.15753 * 26 24 10 40 40 H 1.09003 * 109.47228 * 182.15088 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4674 1.2007 -0.0005 5 6 4.1867 0.0113 -0.0005 6 17 5.9226 0.0198 -0.0005 7 6 3.4757 -1.1904 -0.0005 8 6 4.1911 -2.4903 -0.0011 9 8 5.4057 -2.5151 -0.0011 10 7 3.4934 -3.6434 -0.0006 11 6 2.0237 -3.7585 0.0000 12 6 1.7326 -5.1510 0.6129 13 1 0.7664 -5.5302 0.2801 14 7 1.8011 -5.1056 2.0756 15 6 0.6956 -4.7517 2.8021 16 1 -0.2267 -4.5056 2.2968 17 6 0.7602 -4.7092 4.1881 18 7 -0.3022 -4.3685 4.8864 19 14 2.3555 -5.1341 5.0621 20 1 3.1686 -3.9035 5.2342 21 1 2.0504 -5.7163 6.3937 22 1 3.1156 -6.1205 4.2531 23 6 2.8937 -5.9977 0.0278 24 6 4.0698 -4.9988 -0.0005 25 1 4.6953 -5.1377 0.8813 26 6 4.9017 -5.2103 -1.2669 27 7 2.1450 -1.1501 -0.0060 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.9811 2.1507 -0.0001 32 1 1.6385 -3.7041 -1.0183 33 1 1.5820 -2.9738 0.6142 34 1 2.6294 -5.3264 2.5295 35 1 -0.2568 -4.3384 5.8547 36 1 3.1208 -6.8425 0.6782 37 1 2.6518 -6.3412 -0.9779 38 1 4.2746 -5.0524 -2.1443 39 1 5.7301 -4.5019 -1.2800 40 1 5.2935 -6.2275 -1.2786 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:30 Heat of formation + Delta-G solvation = 24.842363 kcal Electronic energy + Delta-G solvation = -26031.987435 eV Core-core repulsion = 22294.287247 eV Total energy + Delta-G solvation = -3737.700189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.55971 -41.00764 -38.93875 -37.81244 -35.91963 -35.34646 -34.13092 -33.42958 -32.55947 -30.58322 -29.43904 -27.24804 -26.59621 -25.39527 -24.56055 -23.16275 -21.56674 -20.67495 -19.75096 -19.30633 -18.29939 -17.67944 -17.35541 -16.91353 -16.64444 -16.13186 -15.93579 -15.61233 -15.22777 -14.77550 -14.73982 -14.61005 -14.18127 -13.98815 -13.67005 -13.53591 -13.30695 -13.24802 -13.03629 -12.88812 -12.79319 -12.62413 -12.49176 -12.27605 -12.18709 -12.09234 -11.91768 -11.76631 -11.51981 -11.26055 -11.07097 -10.37071 -10.26262 -9.70474 -9.22623 -8.01298 -5.32299 -0.89480 -0.42689 0.76693 1.32135 1.35080 1.40647 1.53065 1.70040 2.45080 2.45838 2.59294 2.78726 3.09596 3.29649 3.37290 3.56415 3.65363 3.85232 3.87331 4.07518 4.20156 4.34393 4.48201 4.69077 4.69430 4.70265 4.74875 4.77294 4.85736 5.03786 5.11442 5.17833 5.20726 5.26749 5.31954 5.45980 5.54309 5.82158 6.23135 6.37486 6.64602 6.92112 7.08786 7.85681 8.02079 9.19701 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.005414 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.073397 B = 5170.494348 C = 6085.154650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.310 3.690 3 N -0.497 5.497 4 C 0.177 3.823 5 C -0.120 4.120 6 Cl -0.004 7.004 7 C 0.131 3.869 8 C 0.566 3.434 9 O -0.537 6.537 10 N -0.580 5.580 11 C 0.083 3.917 12 C 0.158 3.842 13 H 0.088 0.912 14 N -0.742 5.742 15 C -0.213 4.213 16 H 0.072 0.928 17 C -0.057 4.057 18 N -0.978 5.978 19 Si 0.934 3.066 20 H -0.297 1.297 21 H -0.296 1.296 22 H -0.252 1.252 23 C -0.123 4.123 24 C 0.128 3.872 25 H 0.056 0.944 26 C -0.148 4.148 27 N -0.482 5.482 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.222 0.778 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.360 0.640 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 6.855 -16.308 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.211 5.211 4 C 0.008 3.992 5 C -0.153 4.153 6 Cl 0.025 6.975 7 C -0.017 4.017 8 C 0.351 3.649 9 O -0.414 6.414 10 N -0.311 5.311 11 C -0.042 4.042 12 C 0.048 3.952 13 H 0.106 0.894 14 N -0.384 5.384 15 C -0.344 4.344 16 H 0.090 0.910 17 C -0.248 4.248 18 N -0.629 5.629 19 Si 0.764 3.236 20 H -0.225 1.225 21 H -0.223 1.223 22 H -0.177 1.177 23 C -0.162 4.162 24 C 0.026 3.974 25 H 0.074 0.926 26 C -0.206 4.206 27 N -0.199 5.199 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.238 0.762 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.192 0.808 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.335 6.866 -16.277 19.128 hybrid contribution 1.875 0.005 1.349 2.310 sum 9.210 6.871 -14.928 18.838 Atomic orbital electron populations 1.20769 0.82656 1.05235 1.05642 1.24108 1.00053 0.82647 0.88801 1.68426 1.09313 1.30015 1.13379 1.24007 0.88900 0.97957 0.88321 1.22975 0.89717 0.96142 1.06447 1.98418 1.04451 1.98611 1.96059 1.21630 0.90350 0.94196 0.95567 1.17519 0.86098 0.82588 0.78648 1.90803 1.12526 1.86572 1.51497 1.48491 1.09145 1.04928 1.68522 1.23478 0.78164 1.01211 1.01359 1.21680 0.98524 0.92786 0.82167 0.89435 1.42742 1.10611 1.82692 1.02328 1.19043 0.91109 1.35301 0.88949 0.90995 1.25256 0.99221 1.03143 0.97203 1.69828 1.30045 1.57235 1.05814 0.85718 0.81323 0.78038 0.78537 1.22476 1.22267 1.17670 1.23039 0.92704 0.96761 1.03662 1.21810 0.95877 0.80636 0.99071 0.92569 1.22027 0.99609 1.02956 0.95958 1.68739 1.07086 1.30878 1.13219 0.86816 0.89762 0.87974 0.76173 0.90016 0.89507 0.80768 0.93643 0.89369 0.86603 0.91558 0.93407 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 10.31 71.24 0.73 -1.03 16 2 C 0.31 8.38 7.64 138.79 1.06 9.44 16 3 N -0.50 -12.31 10.31 -187.76 -1.94 -14.24 16 4 C 0.18 3.91 11.14 84.83 0.94 4.86 16 5 C -0.12 -3.30 6.40 22.79 0.15 -3.15 16 6 Cl 0.00 -0.12 26.25 -2.72 -0.07 -0.19 16 7 C 0.13 4.23 6.75 41.98 0.28 4.51 16 8 C 0.57 19.77 7.65 86.94 0.67 20.44 16 9 O -0.54 -19.86 13.22 -3.67 -0.05 -19.91 16 10 N -0.58 -18.85 3.07 -790.22 -2.43 -21.28 16 11 C 0.08 2.64 5.65 86.85 0.49 3.13 16 12 C 0.16 5.19 3.69 46.38 0.17 5.36 16 13 H 0.09 2.78 8.13 -2.39 -0.02 2.76 16 14 N -0.74 -32.28 5.07 -316.37 -1.60 -33.88 16 15 C -0.21 -11.36 10.47 84.04 0.88 -10.48 16 16 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 17 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 18 N -0.98 -61.16 13.97 21.65 0.30 -60.86 16 19 Si 0.93 45.98 27.74 68.60 1.90 47.88 16 20 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 22 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 23 C -0.12 -3.07 6.04 31.78 0.19 -2.88 16 24 C 0.13 3.61 3.46 45.29 0.16 3.77 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 C -0.15 -3.38 9.10 71.98 0.66 -2.72 16 27 N -0.48 -15.08 6.69 -177.06 -1.18 -16.26 16 28 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.22 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 3.30 5.92 -2.39 -0.01 3.29 16 34 H 0.36 15.88 5.68 -92.71 -0.53 15.35 16 35 H 0.25 15.41 8.31 -92.72 -0.77 14.64 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.12 2.12 7.86 -2.39 -0.02 2.10 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.30 6.92 -2.38 -0.02 1.28 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -70.44 344.93 2.27 -68.17 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.49 Total: 22.11 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 6.85 Total: 28.46 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -6.85 Total: -146.53 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.07 Total: -0.19 kcal Total: -70.44 2.27 -68.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.011 kcal (2) G-P(sol) polarization free energy of solvation -70.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds