Wall clock time and date at job start Tue Mar 31 2020 13:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31927 * 119.01744 * 2 1 4 4 C 1.32138 * 121.05570 * 180.02562 * 3 2 1 5 5 C 1.38991 * 119.12110 * 359.71799 * 4 3 2 6 6 Cl 1.73605 * 120.88344 * 180.29567 * 5 4 3 7 7 C 1.39634 * 118.22851 * 0.54169 * 5 4 3 8 8 C 1.48365 * 120.56194 * 179.73339 * 7 5 4 9 9 O 1.21492 * 120.00177 * 359.72209 * 8 7 5 10 10 N 1.34776 * 120.00394 * 179.72304 * 8 7 5 11 11 C 1.47425 * 125.64172 * 359.94520 * 10 8 7 12 12 C 1.54914 * 104.83075 * 204.17368 * 11 10 8 13 13 H 1.08993 * 111.03450 * 81.08248 * 12 11 10 14 14 N 1.46504 * 111.00258 * 204.92014 * 12 11 10 15 15 C 1.36943 * 119.99781 * 267.19686 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48501 * 109.46896 * 89.99850 * 19 17 15 21 21 H 1.48499 * 109.47039 * 210.00011 * 19 17 15 22 22 H 1.48501 * 109.47275 * 329.99811 * 19 17 15 23 23 C 1.55149 * 101.58116 * 322.99151 * 12 11 10 24 24 C 1.47014 * 125.65196 * 180.02562 * 10 8 7 25 25 H 1.09000 * 109.88255 * 59.47809 * 24 10 8 26 26 C 1.53004 * 110.01238 * 298.38209 * 24 10 8 27 27 N 1.31525 * 119.01486 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47085 * 269.97673 * 1 2 3 29 29 H 1.08995 * 109.47124 * 29.97674 * 1 2 3 30 30 H 1.09002 * 109.47491 * 149.98047 * 1 2 3 31 31 H 1.07999 * 120.43798 * 179.97438 * 4 3 2 32 32 H 1.09004 * 110.36839 * 85.34088 * 11 10 8 33 33 H 1.08995 * 110.37517 * 323.01587 * 11 10 8 34 34 H 0.97000 * 120.00410 * 87.20011 * 14 12 11 35 35 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 36 36 H 1.09007 * 110.72112 * 153.86341 * 23 12 11 37 37 H 1.08999 * 110.72697 * 277.13701 * 23 12 11 38 38 H 1.08996 * 109.46835 * 302.11795 * 26 24 10 39 39 H 1.08999 * 109.46527 * 62.11556 * 26 24 10 40 40 H 1.08998 * 109.46762 * 182.11481 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0113 0.0049 6 17 5.9227 0.0197 0.0122 7 6 3.4757 -1.1905 -0.0009 8 6 4.1910 -2.4903 -0.0015 9 8 5.4057 -2.5152 -0.0019 10 7 3.4935 -3.6435 -0.0015 11 6 2.0238 -3.7585 0.0002 12 6 1.7357 -5.1519 0.6128 13 1 1.7868 -5.1190 1.7010 14 7 0.4377 -5.6637 0.1660 15 6 -0.6840 -5.4346 0.9174 16 1 -0.6117 -4.8769 1.8394 17 6 -1.9129 -5.9245 0.4970 18 7 -2.0009 -6.6046 -0.6264 19 14 -3.4417 -5.6186 1.5258 20 1 -4.0809 -4.3486 1.0970 21 1 -4.3963 -6.7408 1.3396 22 1 -3.0633 -5.5232 2.9586 23 6 2.8980 -5.9961 0.0266 24 6 4.0722 -4.9949 -0.0014 25 1 4.6966 -5.1308 0.8816 26 6 4.9065 -5.2073 -1.2663 27 7 2.1450 -1.1502 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 3.9812 2.1507 -0.0009 32 1 1.6378 -3.7046 -1.0178 33 1 1.5825 -2.9748 0.6160 34 1 0.3729 -6.1650 -0.6619 35 1 -2.8596 -6.9467 -0.9202 36 1 3.1271 -6.8407 0.6766 37 1 2.6574 -6.3372 -0.9803 38 1 4.2803 -5.0522 -2.1448 39 1 5.7334 -4.4972 -1.2795 40 1 5.3002 -6.2237 -1.2754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:33 Heat of formation + Delta-G solvation = 23.291186 kcal Electronic energy + Delta-G solvation = -25550.948109 eV Core-core repulsion = 21813.180656 eV Total energy + Delta-G solvation = -3737.767453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.57989 -41.00672 -38.87224 -37.79910 -35.98812 -35.36466 -34.14062 -33.24401 -32.57277 -30.07476 -29.45646 -27.24915 -26.57741 -25.69635 -24.52770 -22.95038 -21.77045 -20.68614 -19.47250 -19.11799 -18.29572 -17.64344 -17.34510 -16.94883 -16.72219 -16.11130 -15.82391 -15.42630 -15.29024 -14.83195 -14.77333 -14.39183 -14.09012 -14.04852 -13.64830 -13.45271 -13.31995 -13.10573 -12.90509 -12.84294 -12.81399 -12.60728 -12.47073 -12.23511 -12.21402 -12.10609 -12.01281 -11.69533 -11.46731 -11.26353 -10.96015 -10.37319 -10.25626 -9.68342 -8.99984 -7.90433 -5.19874 -0.90835 -0.43434 0.77345 1.51448 1.53235 1.53528 1.61556 1.65226 2.43948 2.53960 2.61404 2.77001 3.05985 3.36162 3.41497 3.60194 3.82101 3.89446 3.99476 4.16236 4.20968 4.34945 4.47933 4.52243 4.66252 4.69320 4.73765 4.76264 4.85673 5.00998 5.09526 5.16981 5.22534 5.26736 5.37455 5.40791 5.47641 5.58155 6.29505 6.34324 6.63655 6.89448 7.38215 8.08816 8.34082 9.32514 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.004300 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.245281 B = 6509.530544 C = 8332.268089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.312 3.688 3 N -0.495 5.495 4 C 0.179 3.821 5 C -0.115 4.115 6 Cl -0.001 7.001 7 C 0.130 3.870 8 C 0.569 3.431 9 O -0.530 6.530 10 N -0.585 5.585 11 C 0.096 3.904 12 C 0.162 3.838 13 H 0.063 0.937 14 N -0.720 5.720 15 C -0.239 4.239 16 H 0.077 0.923 17 C -0.066 4.066 18 N -0.967 5.967 19 Si 0.966 3.034 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.271 1.271 23 C -0.126 4.126 24 C 0.137 3.863 25 H 0.085 0.915 26 C -0.152 4.152 27 N -0.488 5.488 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.224 0.776 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.842 14.129 0.920 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.210 5.210 4 C 0.010 3.990 5 C -0.148 4.148 6 Cl 0.028 6.972 7 C -0.017 4.017 8 C 0.355 3.645 9 O -0.406 6.406 10 N -0.317 5.317 11 C -0.029 4.029 12 C 0.052 3.948 13 H 0.081 0.919 14 N -0.359 5.359 15 C -0.371 4.371 16 H 0.095 0.905 17 C -0.259 4.259 18 N -0.617 5.617 19 Si 0.796 3.204 20 H -0.212 1.212 21 H -0.227 1.227 22 H -0.196 1.196 23 C -0.165 4.165 24 C 0.034 3.966 25 H 0.103 0.897 26 C -0.210 4.210 27 N -0.206 5.206 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.564 14.144 1.072 18.949 hybrid contribution -0.040 -0.237 -0.053 0.246 sum 12.524 13.907 1.020 18.743 Atomic orbital electron populations 1.20767 0.83042 1.05364 1.05383 1.23987 0.99793 0.82643 0.88939 1.68439 1.09436 1.29810 1.13270 1.24047 0.88771 0.98044 0.88119 1.22958 0.89814 0.95951 1.06073 1.98427 1.04195 1.98598 1.95999 1.21603 0.90162 0.94176 0.95805 1.17526 0.86094 0.82384 0.78540 1.90817 1.12252 1.86485 1.51085 1.48504 1.08889 1.05257 1.69060 1.23366 0.77432 1.00964 1.01163 1.21509 0.85231 0.91146 0.96957 0.91874 1.42387 1.02572 1.64270 1.26632 1.19583 0.86878 1.27554 1.03046 0.90510 1.25447 1.00469 1.01194 0.98773 1.69799 1.24646 1.42937 1.24322 0.85249 0.79798 0.76733 0.78633 1.21182 1.22679 1.19585 1.22971 0.93307 0.97570 1.02605 1.21722 0.95120 0.79998 0.99723 0.89725 1.22053 0.99638 1.03224 0.96060 1.68770 1.07336 1.31046 1.13438 0.87940 0.87307 0.89726 0.75996 0.93192 0.89022 0.79068 0.94063 0.88679 0.90613 0.93278 0.92464 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 10.31 71.24 0.73 -1.07 16 2 C 0.31 7.91 7.64 138.79 1.06 8.97 16 3 N -0.49 -11.03 10.31 -187.76 -1.94 -12.97 16 4 C 0.18 3.41 11.14 84.83 0.94 4.36 16 5 C -0.12 -2.78 6.40 22.79 0.15 -2.63 16 6 Cl 0.00 -0.03 26.25 -2.72 -0.07 -0.10 16 7 C 0.13 3.85 6.75 41.98 0.28 4.13 16 8 C 0.57 18.33 7.65 86.94 0.66 19.00 16 9 O -0.53 -17.82 13.20 -3.69 -0.05 -17.87 16 10 N -0.59 -18.63 3.07 -790.84 -2.43 -21.05 16 11 C 0.10 3.38 5.66 86.86 0.49 3.87 16 12 C 0.16 6.01 3.71 46.38 0.17 6.19 16 13 H 0.06 2.38 8.09 -2.39 -0.02 2.36 16 14 N -0.72 -33.71 5.24 -316.38 -1.66 -35.37 16 15 C -0.24 -12.39 9.96 84.03 0.84 -11.55 16 16 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 18 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 19 Si 0.97 43.84 29.55 68.60 2.03 45.87 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.13 -3.77 6.12 31.78 0.19 -3.57 16 24 C 0.14 3.85 3.45 45.35 0.16 4.01 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 C -0.15 -3.86 9.10 71.98 0.66 -3.21 16 27 N -0.49 -14.49 6.69 -177.05 -1.18 -15.67 16 28 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 3.34 5.92 -2.39 -0.01 3.32 16 34 H 0.38 19.04 7.76 -92.71 -0.72 18.32 16 35 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.08 2.34 7.71 -2.39 -0.02 2.32 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.58 6.91 -2.39 -0.02 1.56 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -63.33 347.82 2.15 -61.18 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.36 Total: 26.76 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 6.81 Total: 25.36 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -6.92 Total: -141.20 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.07 Total: -0.10 kcal Total: -63.33 2.15 -61.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.468 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds