Wall clock time and date at job start Tue Mar 31 2020 13:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31934 * 119.01851 * 2 1 4 4 C 1.32131 * 121.05725 * 179.97438 * 3 2 1 5 5 C 1.38989 * 119.12565 * 359.97438 * 4 3 2 6 6 Cl 1.73592 * 120.88867 * 180.02562 * 5 4 3 7 7 C 1.39636 * 118.22717 * 0.02562 * 5 4 3 8 8 C 1.48362 * 120.56459 * 180.02562 * 7 5 4 9 9 O 1.21490 * 120.00193 * 359.97438 * 8 7 5 10 10 N 1.34780 * 120.00364 * 179.97438 * 8 7 5 11 11 C 1.47426 * 125.64215 * 359.69171 * 10 8 7 12 12 C 1.55137 * 104.71799 * 155.82016 * 11 10 8 13 13 H 1.08998 * 111.22374 * 279.17466 * 12 11 10 14 14 N 1.46497 * 110.90323 * 155.27522 * 12 11 10 15 15 C 1.36939 * 119.99944 * 92.97713 * 14 12 11 16 16 H 1.07995 * 120.00207 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99926 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99992 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00217 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47089 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47435 * 119.99804 * 19 17 15 22 22 H 1.48503 * 109.47008 * 239.99841 * 19 17 15 23 23 C 1.55147 * 101.48576 * 37.29385 * 12 11 10 24 24 C 1.47017 * 125.65105 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.88492 * 300.43642 * 24 10 8 26 26 C 1.53001 * 109.88537 * 61.44867 * 24 10 8 27 27 N 1.31517 * 119.02076 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46992 * 90.00037 * 1 2 3 29 29 H 1.08998 * 109.47387 * 210.00196 * 1 2 3 30 30 H 1.09001 * 109.47073 * 330.00356 * 1 2 3 31 31 H 1.08004 * 120.43944 * 179.97438 * 4 3 2 32 32 H 1.08998 * 110.36828 * 274.74228 * 11 10 8 33 33 H 1.08994 * 110.37119 * 37.07386 * 11 10 8 34 34 H 0.97000 * 120.00117 * 272.97322 * 14 12 11 35 35 H 0.97007 * 120.00109 * 180.02562 * 18 17 15 36 36 H 1.08996 * 110.72167 * 205.96629 * 23 12 11 37 37 H 1.09006 * 110.72100 * 82.69798 * 23 12 11 38 38 H 1.09003 * 109.47007 * 58.54867 * 26 24 10 39 39 H 1.09005 * 109.46833 * 178.54834 * 26 24 10 40 40 H 1.09000 * 109.46932 * 298.55050 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 0.0005 5 6 4.1867 0.0114 0.0016 6 17 5.9226 0.0198 0.0030 7 6 3.4757 -1.1904 0.0015 8 6 4.1911 -2.4902 0.0032 9 8 5.4057 -2.5151 0.0042 10 7 3.4935 -3.6434 0.0037 11 6 2.0238 -3.7584 0.0091 12 6 1.7352 -5.1526 -0.6071 13 1 1.7854 -5.1210 -1.6954 14 7 0.4377 -5.6638 -0.1586 15 6 -0.6847 -5.4357 -0.9092 16 1 -0.6134 -4.8785 -1.8316 17 6 -1.9141 -5.9206 -0.4845 18 7 -2.0009 -6.6001 0.6394 19 14 -3.4451 -5.6100 -1.5088 20 1 -3.0816 -4.8280 -2.7178 21 1 -4.0385 -6.9081 -1.9183 22 1 -4.4324 -4.8463 -0.7042 23 6 2.8980 -5.9960 -0.0210 24 6 4.0722 -4.9949 0.0059 25 1 4.6965 -5.1323 -0.8770 26 6 4.9077 -5.2012 1.2709 27 7 2.1450 -1.1500 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.9812 2.1508 0.0001 32 1 1.6428 -3.7057 1.0290 33 1 1.5796 -2.9740 -0.6037 34 1 0.3735 -6.1640 0.6700 35 1 -2.8600 -6.9393 0.9360 36 1 3.1265 -6.8414 -0.6700 37 1 2.6583 -6.3358 0.9866 38 1 4.2792 -5.0548 2.1493 39 1 5.3122 -6.2134 1.2781 40 1 5.7269 -4.4824 1.2864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:36 Heat of formation + Delta-G solvation = 23.301842 kcal Electronic energy + Delta-G solvation = -25552.504811 eV Core-core repulsion = 21814.737820 eV Total energy + Delta-G solvation = -3737.766991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57953 -41.00476 -38.86728 -37.79933 -35.98952 -35.36435 -34.14024 -33.24165 -32.56466 -30.07279 -29.45580 -27.24902 -26.57371 -25.69836 -24.52696 -22.95020 -21.77147 -20.68564 -19.47189 -19.11946 -18.29442 -17.64002 -17.34782 -16.94602 -16.72407 -16.10926 -15.82134 -15.42861 -15.29465 -14.82601 -14.77381 -14.39367 -14.08355 -14.04884 -13.65242 -13.45403 -13.31825 -13.10615 -12.90809 -12.86761 -12.81300 -12.61304 -12.46869 -12.24311 -12.21107 -12.05491 -12.00736 -11.69665 -11.46867 -11.26085 -10.97521 -10.37251 -10.25411 -9.68206 -8.99875 -7.90682 -5.20025 -0.90795 -0.43348 0.77444 1.51437 1.52289 1.53416 1.62376 1.65373 2.44045 2.53988 2.61274 2.77086 3.06118 3.36205 3.41389 3.60276 3.82024 3.89462 3.99610 4.16260 4.20970 4.35073 4.47835 4.52060 4.66499 4.69428 4.73775 4.76345 4.85680 5.01180 5.09585 5.16913 5.22534 5.26781 5.37707 5.40952 5.47739 5.58472 6.29482 6.34419 6.63721 6.89535 7.38095 8.08694 8.33896 9.32451 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.004303 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.142280 B = 6505.277607 C = 8329.849002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.312 3.688 3 N -0.495 5.495 4 C 0.179 3.821 5 C -0.115 4.115 6 Cl -0.001 7.001 7 C 0.130 3.870 8 C 0.569 3.431 9 O -0.530 6.530 10 N -0.585 5.585 11 C 0.096 3.904 12 C 0.163 3.837 13 H 0.064 0.936 14 N -0.720 5.720 15 C -0.237 4.237 16 H 0.077 0.923 17 C -0.067 4.067 18 N -0.967 5.967 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.298 1.298 22 H -0.294 1.294 23 C -0.126 4.126 24 C 0.137 3.863 25 H 0.085 0.915 26 C -0.152 4.152 27 N -0.488 5.488 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.224 0.776 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.377 0.623 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.877 14.166 -0.954 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.210 5.210 4 C 0.010 3.990 5 C -0.148 4.148 6 Cl 0.028 6.972 7 C -0.017 4.017 8 C 0.355 3.645 9 O -0.406 6.406 10 N -0.317 5.317 11 C -0.030 4.030 12 C 0.052 3.948 13 H 0.082 0.918 14 N -0.359 5.359 15 C -0.369 4.369 16 H 0.095 0.905 17 C -0.259 4.259 18 N -0.617 5.617 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.225 1.225 22 H -0.221 1.221 23 C -0.165 4.165 24 C 0.035 3.965 25 H 0.103 0.897 26 C -0.210 4.210 27 N -0.206 5.206 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.603 14.193 -1.111 19.013 hybrid contribution -0.046 -0.252 0.071 0.266 sum 12.557 13.941 -1.040 18.791 Atomic orbital electron populations 1.20767 0.83030 1.05375 1.05388 1.23991 0.99801 0.82640 0.88931 1.68438 1.09435 1.29817 1.13270 1.24044 0.88774 0.98044 0.88121 1.22956 0.89816 0.95953 1.06078 1.98426 1.04193 1.98598 1.95999 1.21604 0.90163 0.94177 0.95801 1.17526 0.86094 0.82386 0.78542 1.90816 1.12256 1.86486 1.51084 1.48512 1.08905 1.05256 1.69054 1.23417 0.77428 1.01001 1.01130 1.21555 0.85202 0.91124 0.96945 0.91802 1.42396 1.02588 1.64355 1.26529 1.19621 0.86796 1.27568 1.02923 0.90471 1.25449 1.00457 1.01296 0.98730 1.69812 1.24567 1.43115 1.24227 0.85180 0.80033 0.76862 0.78325 1.18970 1.22518 1.22098 1.22968 0.93320 0.97572 1.02604 1.21723 0.95106 0.80003 0.99711 0.89722 1.22057 0.99649 1.03231 0.96069 1.68764 1.07335 1.31049 1.13447 0.87935 0.89702 0.87307 0.76001 0.93190 0.88974 0.79074 0.94076 0.88678 0.90631 0.93274 0.89341 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 10.31 71.24 0.73 -1.07 16 2 C 0.31 7.89 7.64 138.79 1.06 8.95 16 3 N -0.49 -11.02 10.31 -187.77 -1.94 -12.96 16 4 C 0.18 3.41 11.14 84.83 0.94 4.35 16 5 C -0.12 -2.78 6.40 22.79 0.15 -2.63 16 6 Cl 0.00 -0.03 26.25 -2.72 -0.07 -0.10 16 7 C 0.13 3.85 6.75 41.98 0.28 4.13 16 8 C 0.57 18.32 7.64 86.94 0.66 18.98 16 9 O -0.53 -17.81 13.17 -3.68 -0.05 -17.85 16 10 N -0.59 -18.61 3.06 -790.41 -2.42 -21.04 16 11 C 0.10 3.36 5.68 86.93 0.49 3.86 16 12 C 0.16 6.01 3.73 46.46 0.17 6.18 16 13 H 0.06 2.41 8.09 -2.39 -0.02 2.39 16 14 N -0.72 -33.67 5.24 -316.03 -1.66 -35.33 16 15 C -0.24 -12.29 9.96 84.03 0.84 -11.46 16 16 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 17 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 18 N -0.97 -56.41 13.06 21.65 0.28 -56.13 16 19 Si 0.97 43.87 29.55 68.60 2.03 45.90 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 C -0.13 -3.77 6.13 31.78 0.19 -3.57 16 24 C 0.14 3.85 3.45 45.34 0.16 4.01 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 C -0.15 -3.87 9.11 71.98 0.66 -3.22 16 27 N -0.49 -14.47 6.68 -177.05 -1.18 -15.65 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 3.35 5.90 -2.39 -0.01 3.34 16 34 H 0.38 19.02 7.76 -92.71 -0.72 18.30 16 35 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.08 2.33 7.72 -2.38 -0.02 2.31 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.58 6.87 -2.39 -0.02 1.57 16 Total: -1.00 -63.38 347.77 2.16 -61.21 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.36 Total: 26.58 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.81 Total: 25.37 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -6.92 Total: -141.11 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.07 Total: -0.10 kcal Total: -63.38 2.16 -61.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.514 kcal (2) G-P(sol) polarization free energy of solvation -63.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds