Wall clock time and date at job start Tue Mar 31 2020 13:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31931 * 119.01669 * 2 1 4 4 C 1.32140 * 121.05403 * 180.02562 * 3 2 1 5 5 C 1.38987 * 119.12220 * 359.97438 * 4 3 2 6 6 Cl 1.73601 * 120.88370 * 179.97438 * 5 4 3 7 7 C 1.39630 * 118.22976 * 0.02562 * 5 4 3 8 8 C 1.48376 * 120.56366 * 179.97438 * 7 5 4 9 9 O 1.21493 * 119.99833 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00185 * 180.02562 * 8 7 5 11 11 C 1.47428 * 125.64386 * 0.05195 * 10 8 7 12 12 C 1.54921 * 104.82929 * 204.08294 * 11 10 8 13 13 H 1.08999 * 111.03200 * 81.08246 * 12 11 10 14 14 N 1.46499 * 111.00153 * 204.91625 * 12 11 10 15 15 C 1.36935 * 119.99942 * 267.19345 * 14 12 11 16 16 H 1.07999 * 120.00083 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99632 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00227 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99548 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99577 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00184 * 19 17 15 23 23 C 1.55160 * 101.57850 * 322.99372 * 12 11 10 24 24 C 1.47021 * 125.64912 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.88151 * 298.40039 * 24 10 8 26 26 C 1.52991 * 109.88419 * 59.56572 * 24 10 8 27 27 N 1.31513 * 119.01665 * 180.28660 * 2 1 3 28 28 H 1.09001 * 109.47421 * 89.99130 * 1 2 3 29 29 H 1.08993 * 109.47095 * 209.99966 * 1 2 3 30 30 H 1.09006 * 109.46685 * 329.99264 * 1 2 3 31 31 H 1.07996 * 120.43855 * 180.02562 * 4 3 2 32 32 H 1.08995 * 110.36971 * 85.25027 * 11 10 8 33 33 H 1.09000 * 110.36963 * 322.91715 * 11 10 8 34 34 H 0.96999 * 119.99980 * 87.20414 * 14 12 11 35 35 H 0.97000 * 120.00284 * 359.97438 * 18 17 15 36 36 H 1.09000 * 110.71574 * 153.86820 * 23 12 11 37 37 H 1.09003 * 110.71818 * 277.13385 * 23 12 11 38 38 H 1.08997 * 109.47378 * 177.80671 * 26 24 10 39 39 H 1.08995 * 109.47223 * 297.81147 * 26 24 10 40 40 H 1.08998 * 109.47207 * 57.80855 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0113 -0.0005 6 17 5.9227 0.0197 -0.0018 7 6 3.4757 -1.1904 -0.0005 8 6 4.1911 -2.4903 -0.0011 9 8 5.4058 -2.5152 -0.0020 10 7 3.4935 -3.6435 -0.0016 11 6 2.0237 -3.7584 -0.0028 12 6 1.7345 -5.1524 0.6082 13 1 1.7836 -5.1203 1.6966 14 7 0.4373 -5.6638 0.1587 15 6 -0.6857 -5.4353 0.9082 16 1 -0.6152 -4.8777 1.8304 17 6 -1.9147 -5.9203 0.4825 18 7 -2.0006 -6.5994 -0.6417 19 14 -3.4468 -5.6080 1.5045 20 1 -4.6210 -6.2258 0.8377 21 1 -3.2728 -6.2056 2.8528 22 1 -3.6645 -4.1449 1.6359 23 6 2.8980 -5.9961 0.0234 24 6 4.0721 -4.9950 -0.0017 25 1 4.6666 -5.1437 -0.9031 26 6 4.9464 -5.1868 1.2391 27 7 2.1450 -1.1500 -0.0058 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 3.9812 2.1507 -0.0001 32 1 1.6397 -3.7036 -1.0213 33 1 1.5814 -2.9752 0.6130 34 1 0.3740 -6.1643 -0.6697 35 1 -1.2053 -6.7606 -1.1730 36 1 3.1258 -6.8412 0.6731 37 1 2.6591 -6.3363 -0.9842 38 1 5.3404 -6.2029 1.2525 39 1 5.7730 -4.4768 1.2144 40 1 4.3486 -5.0172 2.1346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:39 Heat of formation + Delta-G solvation = 23.251154 kcal Electronic energy + Delta-G solvation = -25617.912227 eV Core-core repulsion = 21880.143039 eV Total energy + Delta-G solvation = -3737.769189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.62354 -41.09670 -38.98186 -37.83743 -36.32276 -35.41212 -34.17686 -33.24353 -32.61974 -29.80514 -29.49050 -27.29346 -26.65549 -25.61069 -24.58750 -23.25443 -21.81223 -20.73038 -19.50286 -19.39380 -18.45501 -17.55596 -17.26174 -17.16310 -16.57314 -16.26920 -15.90465 -15.66964 -15.42273 -14.85320 -14.66575 -14.61620 -14.30019 -14.10734 -13.81452 -13.36253 -13.33133 -13.18704 -12.92860 -12.76971 -12.70647 -12.59859 -12.54530 -12.24119 -12.14606 -12.09782 -11.84341 -11.65197 -11.29266 -11.19072 -10.96367 -10.40955 -10.29855 -9.75994 -9.11441 -8.33560 -5.29820 -0.94806 -0.46772 0.74021 1.46437 1.57997 1.64087 1.72559 1.88740 2.39960 2.50346 2.72102 2.75963 3.01024 3.32207 3.42112 3.50416 3.77177 3.80947 3.87228 4.01010 4.16324 4.29527 4.38818 4.39222 4.62921 4.64732 4.65451 4.73572 4.84690 4.92155 4.96576 5.09791 5.18423 5.19059 5.28347 5.35880 5.43706 5.65307 6.26294 6.54537 6.59691 6.83688 7.10720 8.00291 8.11583 9.17874 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.004320 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.516776 B = 6480.183043 C = 8274.423709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.312 3.688 3 N -0.494 5.494 4 C 0.180 3.820 5 C -0.114 4.114 6 Cl 0.000 7.000 7 C 0.129 3.871 8 C 0.570 3.430 9 O -0.527 6.527 10 N -0.586 5.586 11 C 0.097 3.903 12 C 0.170 3.830 13 H 0.060 0.940 14 N -0.732 5.732 15 C -0.329 4.329 16 H 0.068 0.932 17 C -0.096 4.096 18 N -0.975 5.975 19 Si 1.122 2.878 20 H -0.296 1.296 21 H -0.281 1.281 22 H -0.274 1.274 23 C -0.128 4.128 24 C 0.138 3.862 25 H 0.082 0.918 26 C -0.152 4.152 27 N -0.490 5.490 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.225 0.775 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.363 0.637 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.013 14.543 2.095 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.208 5.208 4 C 0.011 3.989 5 C -0.147 4.147 6 Cl 0.029 6.971 7 C -0.019 4.019 8 C 0.355 3.645 9 O -0.404 6.404 10 N -0.318 5.318 11 C -0.028 4.028 12 C 0.059 3.941 13 H 0.078 0.922 14 N -0.373 5.373 15 C -0.460 4.460 16 H 0.086 0.914 17 C -0.287 4.287 18 N -0.623 5.623 19 Si 0.947 3.053 20 H -0.223 1.223 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.166 4.166 24 C 0.035 3.965 25 H 0.100 0.900 26 C -0.210 4.210 27 N -0.208 5.208 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.241 0.759 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.196 0.804 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.229 14.380 2.403 18.402 hybrid contribution 2.585 -0.093 -0.655 2.668 sum 13.814 14.288 1.748 19.950 Atomic orbital electron populations 1.20767 0.83026 1.05436 1.05310 1.23987 0.99800 0.82632 0.88940 1.68446 1.09444 1.29743 1.13197 1.24066 0.88756 0.98060 0.88037 1.22957 0.89855 0.95916 1.05990 1.98428 1.04116 1.98595 1.95986 1.21589 0.90161 0.94163 0.95947 1.17533 0.86106 0.82355 0.78463 1.90817 1.12188 1.86458 1.50936 1.48486 1.08731 1.05294 1.69298 1.23323 0.77605 1.00874 1.01023 1.21413 0.84736 0.91153 0.96798 0.92178 1.42400 1.03480 1.65157 1.26274 1.20325 0.88856 1.32126 1.04701 0.91441 1.27033 1.03061 0.98557 1.00097 1.70994 1.30869 1.44570 1.15818 0.82702 0.72365 0.76614 0.73601 1.22277 1.20679 1.19994 1.22970 0.93536 0.97745 1.02386 1.21691 0.94904 0.79956 0.99931 0.90027 1.22063 0.99401 1.03359 0.96187 1.68756 1.07379 1.31146 1.13513 0.88097 0.89760 0.87123 0.75894 0.93267 0.89102 0.80395 0.94438 0.88559 0.90785 0.89285 0.92224 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 10.31 71.24 0.73 -1.09 16 2 C 0.31 7.96 7.64 138.79 1.06 9.02 16 3 N -0.49 -11.02 10.31 -187.77 -1.94 -12.95 16 4 C 0.18 3.41 11.14 84.83 0.94 4.36 16 5 C -0.11 -2.76 6.40 22.79 0.15 -2.61 16 6 Cl 0.00 -0.01 26.25 -2.72 -0.07 -0.08 16 7 C 0.13 3.83 6.75 41.98 0.28 4.12 16 8 C 0.57 18.42 7.63 86.94 0.66 19.09 16 9 O -0.53 -17.71 13.06 -3.69 -0.05 -17.76 16 10 N -0.59 -18.80 3.08 -790.83 -2.44 -21.24 16 11 C 0.10 3.47 5.66 86.86 0.49 3.97 16 12 C 0.17 6.39 3.71 46.39 0.17 6.57 16 13 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 14 N -0.73 -34.54 5.24 -316.36 -1.66 -36.20 16 15 C -0.33 -17.38 9.96 84.03 0.84 -16.54 16 16 H 0.07 3.49 7.83 -2.91 -0.02 3.46 16 17 C -0.10 -5.29 5.50 84.86 0.47 -4.82 16 18 N -0.97 -58.60 13.70 21.65 0.30 -58.30 16 19 Si 1.12 49.56 29.92 68.60 2.05 51.61 16 20 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 23 C -0.13 -3.85 6.14 31.78 0.20 -3.66 16 24 C 0.14 3.90 3.49 45.34 0.16 4.06 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 C -0.15 -3.83 9.05 71.98 0.65 -3.18 16 27 N -0.49 -14.69 6.69 -177.05 -1.18 -15.87 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.22 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 3.39 5.93 -2.39 -0.01 3.37 16 34 H 0.36 17.95 6.60 -92.71 -0.61 17.33 16 35 H 0.25 14.64 6.77 -92.71 -0.63 14.02 16 36 H 0.10 2.63 7.83 -2.39 -0.02 2.61 16 37 H 0.07 2.26 8.00 -2.39 -0.02 2.24 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.63 6.77 -2.39 -0.02 1.61 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.02 345.82 2.43 -63.59 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.61 Total: 27.92 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 6.80 Total: 19.28 kcal Atomic # 7 Polarization: -137.65 SS G_CDS: -6.92 Total: -144.56 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.05 Total: -17.76 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.07 Total: -0.08 kcal Total: -66.02 2.43 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.844 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds