Wall clock time and date at job start Tue Mar 31 2020 13:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47079 * 264.98440 * 3 2 1 5 5 H 1.48499 * 109.47286 * 24.98910 * 3 2 1 6 6 H 1.48500 * 109.47086 * 144.98902 * 3 2 1 7 7 C 1.38810 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00329 * 189.11636 * 7 2 1 9 9 N 1.36943 * 119.99470 * 9.12130 * 7 2 1 10 10 C 1.47366 * 125.58264 * 10.67781 * 9 7 2 11 11 C 1.55121 * 104.69168 * 155.19527 * 10 9 7 12 12 C 1.54918 * 101.65417 * 37.40545 * 11 10 9 13 13 N 1.46500 * 112.77893 * 86.26155 * 12 11 10 14 14 C 1.34780 * 120.00287 * 64.06537 * 13 12 11 15 15 O 1.21747 * 119.99532 * 359.97438 * 14 13 12 16 16 C 1.46282 * 120.00349 * 180.02562 * 14 13 12 17 17 S 1.75829 * 125.46596 * 359.69126 * 16 14 13 18 18 C 1.70594 * 91.60831 * 179.97438 * 17 16 14 19 19 C 1.33733 * 111.04204 * 0.32732 * 18 17 16 20 20 C 1.36933 * 125.46673 * 179.97438 * 16 14 13 21 21 F 1.35101 * 123.40182 * 0.02562 * 20 16 14 22 22 C 1.55237 * 108.83911 * 212.71509 * 12 11 10 23 23 C 1.54222 * 106.82034 * 113.67397 * 22 12 11 24 24 C 1.54758 * 104.15428 * 334.35323 * 23 22 12 25 25 C 1.46983 * 125.57699 * 190.98751 * 9 7 2 26 26 H 1.08999 * 111.81078 * 59.07346 * 25 9 7 27 27 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.36755 * 274.13811 * 10 9 7 29 29 H 1.09002 * 110.36580 * 36.46629 * 10 9 7 30 30 H 1.08998 * 111.18981 * 279.25380 * 11 10 9 31 31 H 1.08998 * 110.88978 * 155.42281 * 11 10 9 32 32 H 0.97005 * 120.00306 * 244.05968 * 13 12 11 33 33 H 1.08001 * 124.48140 * 180.02562 * 18 17 16 34 34 H 1.07999 * 122.45676 * 179.72739 * 19 18 17 35 35 H 1.08990 * 110.52853 * 354.00253 * 22 12 11 36 36 H 1.09001 * 109.40204 * 232.71929 * 22 12 11 37 37 H 1.08998 * 110.49790 * 215.68502 * 23 22 12 38 38 H 1.08999 * 110.60888 * 93.07435 * 23 22 12 39 39 H 1.08998 * 110.67012 * 279.37923 * 24 23 22 40 40 H 1.09008 * 110.67182 * 156.23779 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3985 2.6810 0.5914 6 1 3.4907 1.4732 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0800 -1.2079 0.1487 9 7 1.3386 -2.3806 -0.1869 10 6 -0.0650 -2.5085 -0.6172 11 6 -0.1478 -3.9093 -1.2784 12 6 0.7895 -4.7411 -0.3675 13 7 0.1028 -5.2860 0.8063 14 6 -0.8894 -6.1847 0.6499 15 8 -1.2152 -6.5433 -0.4670 16 6 -1.5754 -6.7283 1.8219 17 16 -1.2193 -6.3178 3.4941 18 6 -2.4381 -7.3677 4.0618 19 6 -3.0544 -7.9816 3.0460 20 6 -2.5944 -7.6426 1.7930 21 9 -3.0959 -8.1614 0.6509 22 6 1.4872 -5.8295 -1.2268 23 6 2.9893 -5.4810 -1.2549 24 6 3.0274 -3.9519 -1.0192 25 6 1.8978 -3.7250 0.0142 26 1 2.2476 -3.8692 1.0364 27 1 -0.4850 0.8400 0.0004 28 1 -0.7321 -2.4520 0.2429 29 1 -0.3120 -1.7324 -1.3417 30 1 0.2249 -3.8843 -2.3024 31 1 -1.1667 -4.2951 -1.2455 32 1 0.3622 -5.0000 1.6962 33 1 -2.6770 -7.5204 5.1039 34 1 -3.8547 -8.6909 3.1972 35 1 1.0859 -5.8319 -2.2401 36 1 1.3394 -6.8056 -0.7647 37 1 3.4205 -5.7284 -2.2249 38 1 3.5193 -6.0032 -0.4583 39 1 2.8167 -3.4147 -1.9439 40 1 3.9909 -3.6498 -0.6085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990496388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:20 Heat of formation + Delta-G solvation = -17.232996 kcal Electronic energy + Delta-G solvation = -25837.869646 eV Core-core repulsion = 22080.468678 eV Total energy + Delta-G solvation = -3757.400968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -48.89632 -40.14267 -38.33051 -37.23710 -34.21633 -33.49459 -31.54270 -30.37100 -29.33853 -26.72464 -26.18998 -24.87620 -23.83613 -22.08188 -20.39765 -20.00377 -19.75551 -18.81594 -18.41451 -17.10984 -16.82000 -15.92257 -15.80982 -15.58817 -14.95522 -14.75107 -14.58580 -14.28357 -14.02973 -13.72925 -13.50575 -13.20011 -12.88609 -12.61347 -12.22275 -12.08727 -11.82291 -11.68147 -11.34851 -11.20761 -11.04449 -10.78287 -10.67785 -10.52601 -10.18729 -10.18496 -9.92111 -9.83055 -9.66696 -9.55685 -9.19151 -8.70306 -8.64439 -8.53395 -6.82657 -5.75070 -3.09396 0.19063 1.10959 1.52410 1.98006 3.21502 3.28615 3.38952 3.44417 3.45765 4.08979 4.47239 4.67801 4.70967 4.94356 5.04097 5.12440 5.31091 5.41370 5.50103 5.58726 5.64119 5.80322 5.83461 5.95807 6.07263 6.07937 6.12589 6.21493 6.33798 6.40388 6.52238 6.57149 6.75311 6.75927 6.95824 7.09114 7.53052 7.60428 7.69582 7.79473 8.24674 8.36850 9.17907 9.79992 10.47254 11.37068 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.003983 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.771367 B = 7028.081140 C = 7816.456230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.174 3.826 11 C -0.144 4.144 12 C 0.162 3.838 13 N -0.696 5.696 14 C 0.589 3.411 15 O -0.517 6.517 16 C -0.308 4.308 17 S 0.261 5.739 18 C -0.215 4.215 19 C -0.178 4.178 20 C 0.156 3.844 21 F -0.105 7.105 22 C -0.110 4.110 23 C -0.124 4.124 24 C -0.128 4.128 25 C 0.161 3.839 26 H 0.045 0.955 27 H 0.253 0.747 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -15.689 7.779 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.319 5.319 10 C 0.049 3.951 11 C -0.183 4.183 12 C 0.075 3.925 13 N -0.346 5.346 14 C 0.374 3.626 15 O -0.395 6.395 16 C -0.430 4.430 17 S 0.528 5.472 18 C -0.354 4.354 19 C -0.211 4.211 20 C 0.122 3.878 21 F -0.083 7.083 22 C -0.149 4.149 23 C -0.163 4.163 24 C -0.168 4.168 25 C 0.053 3.947 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.196 0.804 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.227 -14.730 7.665 16.651 hybrid contribution -0.779 -0.068 -0.199 0.807 sum -2.007 -14.798 7.466 16.696 Atomic orbital electron populations 1.69960 1.04973 1.25229 1.56121 1.24823 0.95556 0.97766 1.02001 0.86188 0.78611 0.83528 0.77704 1.21538 1.21791 1.20726 1.18972 0.90990 0.82576 1.43140 0.90623 1.44519 1.09617 0.99261 1.78458 1.21478 0.85474 0.91364 0.96742 1.23373 0.98798 0.98010 0.98118 1.21899 0.92812 0.92594 0.85145 1.45685 1.35877 1.43097 1.09957 1.16603 0.79671 0.79367 0.86937 1.90869 1.64621 1.59863 1.24124 1.24833 1.07998 1.10409 0.99758 1.83290 1.31231 1.38980 0.93739 1.25111 1.02648 1.03073 1.04523 1.19826 1.05304 1.05887 0.90045 1.16878 0.93490 0.94357 0.83091 1.91575 1.85339 1.84223 1.47149 1.22534 0.94816 0.97586 0.99943 1.22354 0.95723 0.97361 1.00819 1.22915 0.99149 0.93942 1.00773 1.21788 0.90971 0.85895 0.96072 0.93762 0.93687 0.95731 0.91212 0.91127 0.91422 0.76857 0.80367 0.82585 0.90968 0.92357 0.92145 0.92304 0.90701 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.68 55.49 0.59 -25.87 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.10 9.95 -15.06 -0.15 -6.25 16 8 H 0.08 1.96 7.84 -52.49 -0.41 1.54 16 9 N -0.59 -14.46 3.03 -160.98 -0.49 -14.95 16 10 C 0.17 4.23 5.43 -2.45 -0.01 4.22 16 11 C -0.14 -2.95 5.83 -24.60 -0.14 -3.09 16 12 C 0.16 2.94 0.77 -128.49 -0.10 2.84 16 13 N -0.70 -11.55 5.27 -45.95 -0.24 -11.79 16 14 C 0.59 10.06 6.99 -13.03 -0.09 9.97 16 15 O -0.52 -10.38 14.08 5.15 0.07 -10.31 16 16 C -0.31 -4.31 6.45 -36.82 -0.24 -4.55 16 17 S 0.26 2.55 22.14 -107.50 -2.38 0.16 16 18 C -0.22 -1.71 10.91 29.15 0.32 -1.39 16 19 C -0.18 -1.71 10.15 -41.35 -0.42 -2.13 16 20 C 0.16 2.09 7.48 -40.24 -0.30 1.79 16 21 F -0.10 -1.63 16.42 2.25 0.04 -1.59 16 22 C -0.11 -1.80 5.34 -24.91 -0.13 -1.93 16 23 C -0.12 -1.84 6.84 -25.17 -0.17 -2.01 16 24 C -0.13 -2.26 6.22 -24.87 -0.15 -2.41 16 25 C 0.16 3.18 3.61 -65.60 -0.24 2.94 16 26 H 0.04 0.87 7.97 -51.93 -0.41 0.45 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.07 1.90 6.92 -51.93 -0.36 1.54 16 30 H 0.07 1.42 7.60 -51.93 -0.39 1.02 16 31 H 0.07 1.43 6.84 -51.93 -0.36 1.07 16 32 H 0.40 5.91 7.59 -40.82 -0.31 5.60 16 33 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.07 1.21 7.40 -51.93 -0.38 0.83 16 36 H 0.06 0.95 7.48 -51.93 -0.39 0.56 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 40 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -31.60 338.52 -9.36 -40.97 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.11 Total: 3.87 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.93 Total: -2.21 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.14 Total: -52.61 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.38 Total: 0.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.60 -9.36 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990496388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.735 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds