Wall clock time and date at job start Tue Mar 31 2020 13:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47079 * 264.98440 * 3 2 1 5 5 H 1.48499 * 109.47286 * 24.98910 * 3 2 1 6 6 H 1.48500 * 109.47086 * 144.98902 * 3 2 1 7 7 C 1.38810 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00329 * 189.11636 * 7 2 1 9 9 N 1.36943 * 119.99470 * 9.12130 * 7 2 1 10 10 C 1.47366 * 125.58264 * 10.67781 * 9 7 2 11 11 C 1.55121 * 104.69168 * 155.19527 * 10 9 7 12 12 C 1.54918 * 101.65417 * 37.40545 * 11 10 9 13 13 N 1.46500 * 112.77893 * 86.26155 * 12 11 10 14 14 C 1.34780 * 120.00287 * 64.06537 * 13 12 11 15 15 O 1.21747 * 119.99532 * 359.97438 * 14 13 12 16 16 C 1.46282 * 120.00349 * 180.02562 * 14 13 12 17 17 S 1.75829 * 125.46596 * 359.69126 * 16 14 13 18 18 C 1.70594 * 91.60831 * 179.97438 * 17 16 14 19 19 C 1.33733 * 111.04204 * 0.32732 * 18 17 16 20 20 C 1.36933 * 125.46673 * 179.97438 * 16 14 13 21 21 F 1.35101 * 123.40182 * 0.02562 * 20 16 14 22 22 C 1.55237 * 108.83911 * 212.71509 * 12 11 10 23 23 C 1.54222 * 106.82034 * 113.67397 * 22 12 11 24 24 C 1.54758 * 104.15428 * 334.35323 * 23 22 12 25 25 C 1.46983 * 125.57699 * 190.98751 * 9 7 2 26 26 H 1.08999 * 111.81078 * 59.07346 * 25 9 7 27 27 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.36755 * 274.13811 * 10 9 7 29 29 H 1.09002 * 110.36580 * 36.46629 * 10 9 7 30 30 H 1.08998 * 111.18981 * 279.25380 * 11 10 9 31 31 H 1.08998 * 110.88978 * 155.42281 * 11 10 9 32 32 H 0.97005 * 120.00306 * 244.05968 * 13 12 11 33 33 H 1.08001 * 124.48140 * 180.02562 * 18 17 16 34 34 H 1.07999 * 122.45676 * 179.72739 * 19 18 17 35 35 H 1.08990 * 110.52853 * 354.00253 * 22 12 11 36 36 H 1.09001 * 109.40204 * 232.71929 * 22 12 11 37 37 H 1.08998 * 110.49790 * 215.68502 * 23 22 12 38 38 H 1.08999 * 110.60888 * 93.07435 * 23 22 12 39 39 H 1.08998 * 110.67012 * 279.37923 * 24 23 22 40 40 H 1.09008 * 110.67182 * 156.23779 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3985 2.6810 0.5914 6 1 3.4907 1.4732 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0800 -1.2079 0.1487 9 7 1.3386 -2.3806 -0.1869 10 6 -0.0650 -2.5085 -0.6172 11 6 -0.1478 -3.9093 -1.2784 12 6 0.7895 -4.7411 -0.3675 13 7 0.1028 -5.2860 0.8063 14 6 -0.8894 -6.1847 0.6499 15 8 -1.2152 -6.5433 -0.4670 16 6 -1.5754 -6.7283 1.8219 17 16 -1.2193 -6.3178 3.4941 18 6 -2.4381 -7.3677 4.0618 19 6 -3.0544 -7.9816 3.0460 20 6 -2.5944 -7.6426 1.7930 21 9 -3.0959 -8.1614 0.6509 22 6 1.4872 -5.8295 -1.2268 23 6 2.9893 -5.4810 -1.2549 24 6 3.0274 -3.9519 -1.0192 25 6 1.8978 -3.7250 0.0142 26 1 2.2476 -3.8692 1.0364 27 1 -0.4850 0.8400 0.0004 28 1 -0.7321 -2.4520 0.2429 29 1 -0.3120 -1.7324 -1.3417 30 1 0.2249 -3.8843 -2.3024 31 1 -1.1667 -4.2951 -1.2455 32 1 0.3622 -5.0000 1.6962 33 1 -2.6770 -7.5204 5.1039 34 1 -3.8547 -8.6909 3.1972 35 1 1.0859 -5.8319 -2.2401 36 1 1.3394 -6.8056 -0.7647 37 1 3.4205 -5.7284 -2.2249 38 1 3.5193 -6.0032 -0.4583 39 1 2.8167 -3.4147 -1.9439 40 1 3.9909 -3.6498 -0.6085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990496388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:19 Heat of formation + Delta-G solvation = -36.965854 kcal Electronic energy + Delta-G solvation = -25838.725327 eV Core-core repulsion = 22080.468678 eV Total energy + Delta-G solvation = -3758.256649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.98258 -41.59639 -39.69006 -38.20564 -36.00053 -34.87483 -33.40352 -31.83160 -30.61892 -28.41590 -27.63599 -25.87398 -25.70754 -23.32407 -22.00808 -21.44915 -20.82267 -20.22420 -19.60272 -18.85506 -18.06372 -17.04522 -16.99138 -16.95402 -16.84882 -16.11518 -15.73228 -15.62351 -15.15099 -15.08117 -14.88889 -14.66683 -14.49900 -13.92438 -13.61020 -13.47415 -13.24040 -13.03777 -12.94781 -12.77481 -12.60875 -12.31842 -12.13677 -12.03104 -11.90843 -11.75538 -11.66624 -11.52914 -11.27590 -11.04745 -10.65782 -10.21412 -9.90839 -9.52246 -8.83727 -7.83880 -5.19673 -0.71549 0.26152 0.74653 1.14225 1.48445 1.50763 1.58149 1.94691 2.03459 2.51900 3.23772 3.31061 3.35002 3.61564 3.69119 3.89956 3.92285 3.93021 4.32825 4.34766 4.38890 4.44720 4.57149 4.59923 4.69902 4.76755 4.82951 4.85197 4.91402 5.07855 5.13947 5.20309 5.20610 5.31569 5.45782 5.51345 5.59489 5.65035 5.70614 6.21299 6.39286 7.06859 7.09390 7.78432 8.45614 9.27794 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.003983 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.771367 B = 7028.081140 C = 7816.456230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.188 3.812 11 C -0.132 4.132 12 C 0.168 3.832 13 N -0.695 5.695 14 C 0.587 3.413 15 O -0.558 6.558 16 C -0.356 4.356 17 S 0.298 5.702 18 C -0.182 4.182 19 C -0.188 4.188 20 C 0.145 3.855 21 F -0.125 7.125 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.122 4.122 25 C 0.154 3.846 26 H 0.055 0.945 27 H 0.246 0.754 28 H -0.006 1.006 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.405 0.595 33 H 0.224 0.776 34 H 0.183 0.817 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -17.280 9.972 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.360 4.360 8 H 0.103 0.897 9 N -0.334 5.334 10 C 0.063 3.937 11 C -0.171 4.171 12 C 0.081 3.919 13 N -0.345 5.345 14 C 0.375 3.625 15 O -0.439 6.439 16 C -0.477 4.477 17 S 0.564 5.436 18 C -0.320 4.320 19 C -0.219 4.219 20 C 0.109 3.891 21 F -0.104 7.104 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.162 4.162 25 C 0.048 3.952 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.201 0.799 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.239 -16.351 9.885 19.108 hybrid contribution -1.264 0.391 -0.779 1.536 sum -1.025 -15.959 9.107 18.403 Atomic orbital electron populations 1.70165 1.06520 1.25304 1.57974 1.25617 0.96290 1.01014 1.02698 0.85163 0.77725 0.79339 0.77514 1.21608 1.22583 1.19025 1.19364 0.91583 0.83522 1.41531 0.89662 1.44700 1.09449 1.00666 1.78546 1.21111 0.85502 0.92313 0.94782 1.23187 0.99095 0.96219 0.98600 1.21783 0.91747 0.92872 0.85497 1.45612 1.36003 1.43027 1.09816 1.17010 0.79206 0.78712 0.87569 1.90829 1.65743 1.61262 1.26032 1.24687 1.09477 1.12420 1.01156 1.83171 1.31386 1.38694 0.90353 1.25675 1.00078 1.00119 1.06178 1.20016 1.06420 1.06995 0.88457 1.17488 0.93554 0.94306 0.83786 1.91513 1.85641 1.84550 1.48698 1.22475 0.95896 0.96841 0.99060 1.22298 0.94497 0.94934 1.02949 1.22781 0.98431 0.96083 0.98917 1.22044 0.92093 0.83850 0.97260 0.92774 0.94522 0.98757 0.94989 0.90848 0.92427 0.75930 0.75958 0.79947 0.91617 0.92005 0.90019 0.89983 0.92773 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.11 10.68 21.65 0.23 -56.88 16 2 C -0.06 -3.51 5.40 84.86 0.46 -3.06 16 3 Si 0.97 45.02 29.56 68.60 2.03 47.05 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.23 -12.42 9.95 84.03 0.84 -11.58 16 8 H 0.09 4.33 7.84 -2.91 -0.02 4.31 16 9 N -0.61 -30.19 3.03 -663.21 -2.01 -32.20 16 10 C 0.19 9.64 5.43 86.94 0.47 10.11 16 11 C -0.13 -5.63 5.83 31.98 0.19 -5.44 16 12 C 0.17 6.11 0.77 5.76 0.00 6.12 16 13 N -0.69 -23.13 5.27 -417.49 -2.20 -25.33 16 14 C 0.59 20.44 6.99 86.33 0.60 21.04 16 15 O -0.56 -23.22 14.08 -4.50 -0.06 -23.28 16 16 C -0.36 -9.84 6.45 24.06 0.16 -9.69 16 17 S 0.30 5.10 22.14 -56.49 -1.25 3.85 16 18 C -0.18 -2.14 10.91 66.80 0.73 -1.41 16 19 C -0.19 -3.09 10.15 21.12 0.21 -2.88 16 20 C 0.14 3.79 7.48 21.84 0.16 3.96 16 21 F -0.13 -4.00 16.42 44.97 0.74 -3.26 16 22 C -0.10 -3.28 5.34 31.78 0.17 -3.11 16 23 C -0.11 -2.91 6.84 31.61 0.22 -2.69 16 24 C -0.12 -4.11 6.22 31.80 0.20 -3.91 16 25 C 0.15 6.00 3.61 46.24 0.17 6.17 16 26 H 0.05 2.03 7.97 -2.39 -0.02 2.01 16 27 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 28 H -0.01 -0.31 8.08 -2.39 -0.02 -0.33 16 29 H 0.03 1.85 6.92 -2.39 -0.02 1.83 16 30 H 0.07 3.06 7.60 -2.39 -0.02 3.04 16 31 H 0.06 2.57 6.84 -2.39 -0.02 2.55 16 32 H 0.40 11.92 7.59 -92.70 -0.70 11.22 16 33 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.07 2.17 7.40 -2.39 -0.02 2.15 16 36 H 0.06 1.94 7.48 -2.39 -0.02 1.92 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 40 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -72.62 338.52 2.42 -70.20 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.37 Total: 16.23 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.57 Total: 3.62 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -3.98 Total: -114.41 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.74 Total: -3.26 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.25 Total: 3.85 kcal Total: -72.62 2.42 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990496388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.232 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds