Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99511 * 2 1 4 4 H 1.48511 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47406 * 299.99893 * 3 2 1 6 6 H 1.48500 * 109.47424 * 60.00210 * 3 2 1 7 7 C 1.38813 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99794 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.47372 * 125.57716 * 359.97438 * 9 7 2 11 11 C 1.54868 * 104.81744 * 204.69387 * 10 9 7 12 12 C 1.54912 * 101.76656 * 322.92735 * 11 10 9 13 13 N 1.46504 * 112.32905 * 273.78719 * 12 11 10 14 14 C 1.34777 * 119.99854 * 298.98248 * 13 12 11 15 15 O 1.21743 * 120.00050 * 0.02562 * 14 13 12 16 16 C 1.46287 * 120.00144 * 180.27934 * 14 13 12 17 17 S 1.75832 * 125.46454 * 359.41758 * 16 14 13 18 18 C 1.70598 * 91.60635 * 179.91409 * 17 16 14 19 19 C 1.33726 * 111.04258 * 0.36146 * 18 17 16 20 20 C 1.36925 * 125.46907 * 179.72798 * 16 14 13 21 21 F 1.35107 * 123.40304 * 0.02562 * 20 16 14 22 22 C 1.53580 * 109.09592 * 148.67457 * 12 11 10 23 23 C 1.55468 * 106.05338 * 247.00286 * 22 12 11 24 24 C 1.54748 * 104.36594 * 24.63546 * 23 22 12 25 25 C 1.46977 * 125.57860 * 179.97438 * 9 7 2 26 26 H 1.08994 * 111.81147 * 300.92691 * 25 9 7 27 27 H 0.96997 * 120.00503 * 359.97438 * 1 2 3 28 28 H 1.08998 * 110.37068 * 85.86139 * 10 9 7 29 29 H 1.09004 * 110.36714 * 323.53060 * 10 9 7 30 30 H 1.08999 * 110.96423 * 204.80556 * 11 10 9 31 31 H 1.08998 * 110.96688 * 81.04827 * 11 10 9 32 32 H 0.97000 * 120.00410 * 118.98974 * 13 12 11 33 33 H 1.08004 * 124.47375 * 180.02562 * 18 17 16 34 34 H 1.08001 * 122.45522 * 179.70436 * 19 18 17 35 35 H 1.09000 * 110.01452 * 5.62804 * 22 12 11 36 36 H 1.08997 * 110.02184 * 127.02497 * 22 12 11 37 37 H 1.09003 * 110.27831 * 265.95344 * 23 22 12 38 38 H 1.09009 * 110.61674 * 143.48863 * 23 22 12 39 39 H 1.09004 * 110.67407 * 203.88887 * 24 23 22 40 40 H 1.09007 * 110.67472 * 80.75457 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1411 -2.5314 0.0005 11 6 -0.4025 -3.9240 0.6256 12 6 0.7724 -4.7540 0.0506 13 7 0.4644 -5.3162 -1.2668 14 6 -0.5644 -6.1752 -1.4090 15 8 -1.2379 -6.4837 -0.4429 16 6 -0.8682 -6.7414 -2.7232 17 16 0.0014 -6.3911 -4.2108 18 6 -1.0090 -7.4359 -5.1040 19 6 -1.9365 -7.9941 -4.3189 20 6 -1.8791 -7.6245 -2.9935 21 9 -2.7342 -8.0862 -2.0548 22 6 1.1677 -5.8359 1.0663 23 6 2.5912 -5.4582 1.5646 24 6 2.6854 -3.9307 1.3356 25 6 1.9334 -3.7263 -0.0016 26 1 2.5737 -3.8796 -0.8702 27 1 -0.4851 0.8400 0.0004 28 1 -0.5266 -2.4945 -1.0183 29 1 -0.5981 -1.7507 0.6086 30 1 -1.3612 -4.3252 0.2970 31 1 -0.3525 -3.8789 1.7135 32 1 1.0008 -5.0703 -2.0366 33 1 -0.9155 -7.6178 -6.1645 34 1 -2.6765 -8.6841 -4.6967 35 1 0.4711 -5.8329 1.9047 36 1 1.1709 -6.8147 0.5868 37 1 3.3475 -5.9795 0.9777 38 1 2.7021 -5.6931 2.6233 39 1 3.7258 -3.6188 1.2434 40 1 2.1904 -3.3894 2.1419 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990496390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -14.079935 kcal Electronic energy + Delta-G solvation = -25859.666873 eV Core-core repulsion = 22102.402632 eV Total energy + Delta-G solvation = -3757.264242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -48.89842 -40.19175 -38.33194 -37.23988 -34.24729 -33.45023 -31.49032 -30.39745 -29.33734 -26.71153 -26.20700 -24.87965 -23.83078 -22.07434 -20.39552 -19.98018 -19.76337 -18.80394 -18.42091 -17.13355 -16.85455 -15.92649 -15.81812 -15.60696 -14.95004 -14.75871 -14.56473 -14.29136 -13.99813 -13.71170 -13.50649 -13.17576 -12.85200 -12.61308 -12.22897 -12.09667 -11.82767 -11.65543 -11.36385 -11.16799 -10.98797 -10.85411 -10.68453 -10.53941 -10.19165 -10.08613 -9.96241 -9.79685 -9.65271 -9.45151 -9.19662 -8.71127 -8.66382 -8.56935 -6.86120 -5.64934 -3.08432 0.18282 1.09826 1.51160 1.97372 3.22541 3.28621 3.38588 3.44115 3.46659 4.08289 4.46552 4.67363 4.71665 4.94490 5.03258 5.14576 5.32243 5.40668 5.51742 5.58099 5.64780 5.80598 5.86044 5.99277 6.05380 6.06679 6.14527 6.22327 6.35786 6.42161 6.53988 6.60003 6.77747 6.79790 6.98284 7.10227 7.54960 7.64426 7.69554 7.87922 8.35961 8.37743 9.20895 9.81881 10.46032 11.37654 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.003958 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.004293 B = 7072.857814 C = 7776.341291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.143 4.143 12 C 0.160 3.840 13 N -0.698 5.698 14 C 0.589 3.411 15 O -0.517 6.517 16 C -0.308 4.308 17 S 0.259 5.741 18 C -0.215 4.215 19 C -0.178 4.178 20 C 0.156 3.844 21 F -0.104 7.104 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.128 4.128 25 C 0.163 3.837 26 H 0.046 0.954 27 H 0.251 0.749 28 H 0.009 0.991 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.395 0.605 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -15.826 -8.893 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.183 4.183 12 C 0.075 3.925 13 N -0.348 5.348 14 C 0.374 3.626 15 O -0.394 6.394 16 C -0.429 4.429 17 S 0.525 5.475 18 C -0.353 4.353 19 C -0.210 4.210 20 C 0.122 3.878 21 F -0.083 7.083 22 C -0.151 4.151 23 C -0.162 4.162 24 C -0.168 4.168 25 C 0.054 3.946 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.196 0.804 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.539 -14.870 -8.538 17.216 hybrid contribution -0.804 -0.112 -0.189 0.834 sum 0.735 -14.982 -8.728 17.354 Atomic orbital electron populations 1.69818 1.04885 1.24614 1.57484 1.24780 0.95656 0.97664 1.02437 0.86033 0.78637 0.83778 0.77225 1.20547 1.21852 1.21787 1.19079 0.90471 0.82262 1.43034 0.90427 1.44543 1.01807 0.99157 1.86489 1.21979 0.84333 0.92975 0.97954 1.23358 0.96826 0.97962 1.00115 1.21724 0.97186 0.92502 0.81134 1.45752 1.31975 1.45493 1.11574 1.16596 0.80908 0.79202 0.85918 1.90868 1.49510 1.60263 1.38762 1.24846 1.06688 1.11024 1.00367 1.83258 1.29638 1.39907 0.94678 1.25103 1.01252 1.03410 1.05581 1.19829 1.03612 1.06163 0.91417 1.16882 0.89209 0.95151 0.86580 1.91579 1.67028 1.86304 1.63352 1.22504 0.96810 0.97473 0.98284 1.22572 0.96195 0.97251 1.00207 1.22914 1.00389 0.93940 0.99548 1.21782 0.91506 0.85854 0.95429 0.93610 0.93794 0.97314 0.87389 0.91277 0.91213 0.77043 0.80372 0.82574 0.91027 0.92163 0.92361 0.92170 0.92233 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 10.07 55.49 0.56 -25.94 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -5.87 10.01 -15.06 -0.15 -6.02 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.54 3.03 -161.14 -0.49 -15.03 16 10 C 0.15 3.74 5.90 -2.58 -0.02 3.72 16 11 C -0.14 -3.00 5.71 -24.74 -0.14 -3.14 16 12 C 0.16 2.93 0.74 -129.38 -0.10 2.84 16 13 N -0.70 -11.54 5.22 -46.76 -0.24 -11.78 16 14 C 0.59 10.07 6.96 -13.03 -0.09 9.98 16 15 O -0.52 -10.44 13.94 5.15 0.07 -10.37 16 16 C -0.31 -4.29 6.45 -36.82 -0.24 -4.53 16 17 S 0.26 2.48 22.14 -107.50 -2.38 0.10 16 18 C -0.22 -1.68 10.91 29.15 0.32 -1.37 16 19 C -0.18 -1.70 10.15 -41.35 -0.42 -2.12 16 20 C 0.16 2.09 7.48 -40.25 -0.30 1.79 16 21 F -0.10 -1.63 16.43 2.25 0.04 -1.59 16 22 C -0.11 -1.85 5.41 -25.12 -0.14 -1.98 16 23 C -0.12 -1.85 6.87 -24.50 -0.17 -2.02 16 24 C -0.13 -2.28 6.22 -24.88 -0.15 -2.44 16 25 C 0.16 3.21 3.67 -65.61 -0.24 2.97 16 26 H 0.05 0.88 7.96 -51.93 -0.41 0.47 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.11 3.00 5.83 -51.93 -0.30 2.70 16 30 H 0.07 1.49 6.53 -51.93 -0.34 1.15 16 31 H 0.07 1.45 7.63 -51.93 -0.40 1.05 16 32 H 0.40 5.78 7.59 -40.82 -0.31 5.47 16 33 H 0.18 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.07 1.22 7.37 -51.93 -0.38 0.84 16 36 H 0.06 0.98 7.58 -51.93 -0.39 0.59 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.51 8.09 -51.92 -0.42 1.09 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -31.54 337.06 -9.36 -40.90 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.04 Total: 4.66 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.93 Total: -2.67 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.17 Total: -52.75 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.38 Total: 0.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.54 -9.36 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990496390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.818 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds