Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99511 * 2 1 4 4 H 1.48511 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47406 * 299.99893 * 3 2 1 6 6 H 1.48500 * 109.47424 * 60.00210 * 3 2 1 7 7 C 1.38813 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99794 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.47372 * 125.57716 * 359.97438 * 9 7 2 11 11 C 1.54868 * 104.81744 * 204.69387 * 10 9 7 12 12 C 1.54912 * 101.76656 * 322.92735 * 11 10 9 13 13 N 1.46504 * 112.32905 * 273.78719 * 12 11 10 14 14 C 1.34777 * 119.99854 * 298.98248 * 13 12 11 15 15 O 1.21743 * 120.00050 * 0.02562 * 14 13 12 16 16 C 1.46287 * 120.00144 * 180.27934 * 14 13 12 17 17 S 1.75832 * 125.46454 * 359.41758 * 16 14 13 18 18 C 1.70598 * 91.60635 * 179.91409 * 17 16 14 19 19 C 1.33726 * 111.04258 * 0.36146 * 18 17 16 20 20 C 1.36925 * 125.46907 * 179.72798 * 16 14 13 21 21 F 1.35107 * 123.40304 * 0.02562 * 20 16 14 22 22 C 1.53580 * 109.09592 * 148.67457 * 12 11 10 23 23 C 1.55468 * 106.05338 * 247.00286 * 22 12 11 24 24 C 1.54748 * 104.36594 * 24.63546 * 23 22 12 25 25 C 1.46977 * 125.57860 * 179.97438 * 9 7 2 26 26 H 1.08994 * 111.81147 * 300.92691 * 25 9 7 27 27 H 0.96997 * 120.00503 * 359.97438 * 1 2 3 28 28 H 1.08998 * 110.37068 * 85.86139 * 10 9 7 29 29 H 1.09004 * 110.36714 * 323.53060 * 10 9 7 30 30 H 1.08999 * 110.96423 * 204.80556 * 11 10 9 31 31 H 1.08998 * 110.96688 * 81.04827 * 11 10 9 32 32 H 0.97000 * 120.00410 * 118.98974 * 13 12 11 33 33 H 1.08004 * 124.47375 * 180.02562 * 18 17 16 34 34 H 1.08001 * 122.45522 * 179.70436 * 19 18 17 35 35 H 1.09000 * 110.01452 * 5.62804 * 22 12 11 36 36 H 1.08997 * 110.02184 * 127.02497 * 22 12 11 37 37 H 1.09003 * 110.27831 * 265.95344 * 23 22 12 38 38 H 1.09009 * 110.61674 * 143.48863 * 23 22 12 39 39 H 1.09004 * 110.67407 * 203.88887 * 24 23 22 40 40 H 1.09007 * 110.67472 * 80.75457 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1411 -2.5314 0.0005 11 6 -0.4025 -3.9240 0.6256 12 6 0.7724 -4.7540 0.0506 13 7 0.4644 -5.3162 -1.2668 14 6 -0.5644 -6.1752 -1.4090 15 8 -1.2379 -6.4837 -0.4429 16 6 -0.8682 -6.7414 -2.7232 17 16 0.0014 -6.3911 -4.2108 18 6 -1.0090 -7.4359 -5.1040 19 6 -1.9365 -7.9941 -4.3189 20 6 -1.8791 -7.6245 -2.9935 21 9 -2.7342 -8.0862 -2.0548 22 6 1.1677 -5.8359 1.0663 23 6 2.5912 -5.4582 1.5646 24 6 2.6854 -3.9307 1.3356 25 6 1.9334 -3.7263 -0.0016 26 1 2.5737 -3.8796 -0.8702 27 1 -0.4851 0.8400 0.0004 28 1 -0.5266 -2.4945 -1.0183 29 1 -0.5981 -1.7507 0.6086 30 1 -1.3612 -4.3252 0.2970 31 1 -0.3525 -3.8789 1.7135 32 1 1.0008 -5.0703 -2.0366 33 1 -0.9155 -7.6178 -6.1645 34 1 -2.6765 -8.6841 -4.6967 35 1 0.4711 -5.8329 1.9047 36 1 1.1709 -6.8147 0.5868 37 1 3.3475 -5.9795 0.9777 38 1 2.7021 -5.6931 2.6233 39 1 3.7258 -3.6188 1.2434 40 1 2.1904 -3.3894 2.1419 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990496390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -33.772238 kcal Electronic energy + Delta-G solvation = -25860.520796 eV Core-core repulsion = 22102.402632 eV Total energy + Delta-G solvation = -3758.118164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.98364 -41.65329 -39.68857 -38.20786 -36.03705 -34.83978 -33.34770 -31.86516 -30.61297 -28.41683 -27.65038 -25.87329 -25.70366 -23.31542 -21.98258 -21.46885 -20.82637 -20.21828 -19.60977 -18.90562 -18.07633 -17.07584 -16.99786 -16.95611 -16.83180 -16.06922 -15.73894 -15.61077 -15.13917 -15.07213 -14.88401 -14.65632 -14.49332 -13.92702 -13.62603 -13.43815 -13.23751 -12.98436 -12.94521 -12.77708 -12.66026 -12.33437 -12.14447 -11.98545 -11.91750 -11.72777 -11.64297 -11.50132 -11.27399 -11.00299 -10.72805 -10.21417 -9.90739 -9.52103 -8.86866 -7.72800 -5.18128 -0.71707 0.25973 0.74266 1.14130 1.49270 1.50122 1.60135 1.95680 2.03493 2.51997 3.23827 3.32398 3.37266 3.60713 3.69213 3.91864 3.93757 3.94505 4.33241 4.35193 4.39225 4.45662 4.55707 4.60088 4.70033 4.77858 4.82738 4.85526 4.93246 5.08093 5.14247 5.20128 5.21028 5.30891 5.47029 5.51055 5.61452 5.65040 5.82279 6.30597 6.40123 7.07780 7.12166 7.80443 8.44853 9.29139 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.003958 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.004293 B = 7072.857814 C = 7776.341291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.222 4.222 8 H 0.089 0.911 9 N -0.611 5.611 10 C 0.164 3.836 11 C -0.132 4.132 12 C 0.168 3.832 13 N -0.695 5.695 14 C 0.586 3.414 15 O -0.559 6.559 16 C -0.356 4.356 17 S 0.300 5.700 18 C -0.182 4.182 19 C -0.189 4.189 20 C 0.144 3.856 21 F -0.126 7.126 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.123 4.123 25 C 0.156 3.844 26 H 0.061 0.939 27 H 0.244 0.756 28 H -0.019 1.019 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.405 0.595 33 H 0.224 0.776 34 H 0.183 0.817 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -17.455 -10.957 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.351 4.351 8 H 0.106 0.894 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.171 4.171 12 C 0.082 3.918 13 N -0.346 5.346 14 C 0.374 3.626 15 O -0.440 6.440 16 C -0.477 4.477 17 S 0.567 5.433 18 C -0.320 4.320 19 C -0.219 4.219 20 C 0.108 3.892 21 F -0.105 7.105 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.163 4.163 25 C 0.049 3.951 26 H 0.079 0.921 27 H 0.054 0.946 28 H -0.001 1.001 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.241 0.759 33 H 0.241 0.759 34 H 0.200 0.800 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.819 -16.531 -10.623 20.018 hybrid contribution -1.511 0.362 0.337 1.589 sum 2.308 -16.169 -10.286 19.303 Atomic orbital electron populations 1.70076 1.06415 1.24673 1.59198 1.25595 0.96409 1.00938 1.03172 0.85014 0.78355 0.79634 0.76362 1.18622 1.22346 1.22453 1.19472 0.91102 0.83136 1.41410 0.89361 1.44720 1.01724 1.00591 1.86446 1.21606 0.84845 0.93879 0.95823 1.23155 0.97735 0.96478 0.99780 1.21576 0.95030 0.92722 0.82501 1.45658 1.32313 1.45348 1.11238 1.17021 0.80076 0.78561 0.86928 1.90829 1.50747 1.61747 1.40655 1.24696 1.09110 1.13032 1.00902 1.83112 1.28653 1.39523 0.92061 1.25675 0.98761 1.00419 1.07188 1.20013 1.05064 1.07243 0.89604 1.17505 0.88754 0.95204 0.87771 1.91514 1.67769 1.86611 1.64574 1.22443 0.97856 0.96903 0.97325 1.22509 0.95398 0.94779 1.01916 1.22776 1.00246 0.96087 0.97166 1.22048 0.92191 0.83801 0.97066 0.92117 0.94642 1.00078 0.90988 0.92408 0.91420 0.75928 0.75931 0.79994 0.92011 0.91587 0.89780 0.90220 0.91023 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.19 10.07 21.65 0.22 -56.97 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 3 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.22 -11.91 10.01 84.03 0.84 -11.07 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.61 -30.29 3.03 -663.72 -2.01 -32.30 16 10 C 0.16 8.47 5.90 86.85 0.51 8.98 16 11 C -0.13 -5.78 5.71 31.89 0.18 -5.60 16 12 C 0.17 6.16 0.74 5.18 0.00 6.16 16 13 N -0.70 -22.96 5.22 -420.04 -2.19 -25.16 16 14 C 0.59 20.45 6.96 86.34 0.60 21.05 16 15 O -0.56 -23.52 13.94 -4.49 -0.06 -23.58 16 16 C -0.36 -9.79 6.45 24.06 0.16 -9.63 16 17 S 0.30 4.98 22.14 -56.49 -1.25 3.73 16 18 C -0.18 -2.08 10.91 66.79 0.73 -1.35 16 19 C -0.19 -3.08 10.15 21.12 0.21 -2.86 16 20 C 0.14 3.77 7.48 21.84 0.16 3.93 16 21 F -0.13 -4.05 16.43 44.97 0.74 -3.31 16 22 C -0.11 -3.40 5.41 31.64 0.17 -3.23 16 23 C -0.11 -2.92 6.87 32.04 0.22 -2.70 16 24 C -0.12 -4.19 6.22 31.79 0.20 -3.99 16 25 C 0.16 6.04 3.67 46.24 0.17 6.21 16 26 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 27 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 28 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.07 4.27 5.83 -2.38 -0.01 4.26 16 30 H 0.06 2.65 6.53 -2.39 -0.02 2.63 16 31 H 0.07 2.95 7.63 -2.39 -0.02 2.93 16 32 H 0.40 11.55 7.59 -92.71 -0.70 10.85 16 33 H 0.22 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.06 2.10 7.37 -2.39 -0.02 2.08 16 36 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.05 1.98 8.09 -2.38 -0.02 1.96 16 Total: -1.00 -72.87 337.06 2.47 -70.39 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.38 Total: 17.65 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.63 Total: 2.51 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -3.98 Total: -114.43 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.74 Total: -3.31 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.25 Total: 3.73 kcal Total: -72.87 2.47 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990496390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.620 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds