Wall clock time and date at job start Tue Mar 31 2020 13:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00329 * 2 1 4 4 H 1.48505 * 109.47111 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47345 * 119.99860 * 3 2 1 6 6 H 1.48500 * 109.47229 * 239.99845 * 3 2 1 7 7 C 1.38820 * 119.99731 * 180.27176 * 2 1 3 8 8 H 1.08000 * 119.99858 * 214.10742 * 7 2 1 9 9 N 1.36931 * 119.99638 * 34.10442 * 7 2 1 10 10 C 1.49295 * 127.10595 * 13.38805 * 9 7 2 11 11 C 1.56322 * 106.46008 * 171.20427 * 10 9 7 12 12 C 1.52131 * 100.91703 * 336.92291 * 11 10 9 13 13 N 1.46494 * 111.08744 * 285.82354 * 12 11 10 14 14 C 1.34783 * 120.00088 * 288.30149 * 13 12 11 15 15 O 1.21735 * 119.99679 * 359.97438 * 14 13 12 16 16 C 1.46338 * 119.99879 * 179.97438 * 14 13 12 17 17 C 1.36740 * 125.43421 * 179.97438 * 16 14 13 18 18 C 1.37338 * 113.33349 * 180.02562 * 17 16 14 19 19 C 1.34210 * 115.04318 * 359.97438 * 18 17 16 20 20 F 1.35106 * 124.53793 * 180.02562 * 19 18 17 21 21 S 1.70618 * 110.92060 * 359.72796 * 19 18 17 22 22 C 1.51223 * 122.55011 * 151.14006 * 12 11 10 23 23 C 1.55701 * 104.60733 * 218.56230 * 22 12 11 24 24 C 1.55030 * 105.77231 * 7.12828 * 23 22 12 25 25 C 1.42711 * 127.09919 * 193.70182 * 9 7 2 26 26 H 1.08991 * 108.17309 * 103.46549 * 25 9 7 27 27 H 0.96997 * 120.00154 * 185.50573 * 1 2 3 28 28 H 1.08995 * 110.04783 * 290.59251 * 10 9 7 29 29 H 1.09004 * 110.04696 * 52.07173 * 10 9 7 30 30 H 1.08998 * 111.29295 * 218.92080 * 11 10 9 31 31 H 1.09000 * 110.95444 * 94.78325 * 11 10 9 32 32 H 0.97008 * 120.00117 * 108.30267 * 13 12 11 33 33 H 1.07996 * 123.33360 * 0.02562 * 17 16 14 34 34 H 1.07999 * 122.48248 * 179.97438 * 18 17 16 35 35 H 1.09006 * 110.40925 * 337.34232 * 22 12 11 36 36 H 1.08994 * 110.41205 * 99.66353 * 22 12 11 37 37 H 1.09001 * 110.15245 * 126.36745 * 23 22 12 38 38 H 1.08992 * 110.16068 * 248.05744 * 23 22 12 39 39 H 1.08997 * 110.45034 * 266.30861 * 24 23 22 40 40 H 1.09003 * 110.92769 * 142.93453 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6962 -1.2125 7 6 2.0102 -1.2022 -0.0057 8 1 2.9509 -1.2852 0.5184 9 7 1.5021 -2.2829 -0.6758 10 6 0.3849 -2.2847 -1.6661 11 6 0.3530 -3.7154 -2.2952 12 6 1.7815 -4.1734 -2.0421 13 7 2.7179 -3.5048 -2.9489 14 6 2.7390 -3.8311 -4.2564 15 8 1.9802 -4.6818 -4.6837 16 6 3.6739 -3.1628 -5.1623 17 6 3.7900 -3.4063 -6.5028 18 6 4.7492 -2.6369 -7.1144 19 6 5.3997 -1.7886 -6.3029 20 9 6.3765 -0.9446 -6.7013 21 16 4.8219 -1.9130 -4.7023 22 6 2.1488 -5.6287 -1.8577 23 6 3.2364 -5.6211 -0.7435 24 6 3.2968 -4.1618 -0.2236 25 6 1.9270 -3.6409 -0.5670 26 1 1.1978 -4.1777 0.0397 27 1 -0.4850 -0.8361 0.0806 28 1 -0.5594 -2.0734 -1.1646 29 1 0.5715 -1.5414 -2.4413 30 1 0.1368 -3.6737 -3.3627 31 1 -0.3623 -4.3536 -1.7763 32 1 3.3227 -2.8272 -2.6083 33 1 3.1870 -4.1318 -7.0286 34 1 4.9644 -2.7091 -8.1703 35 1 1.2794 -6.2024 -1.5363 36 1 2.5530 -6.0389 -2.7831 37 1 2.9537 -6.2989 0.0619 38 1 4.2011 -5.9130 -1.1583 39 1 4.0702 -3.6019 -0.7493 40 1 3.4643 -4.1388 0.8533 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992520439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:56 Heat of formation + Delta-G solvation = -2.814247 kcal Electronic energy + Delta-G solvation = -26033.004934 eV Core-core repulsion = 22276.229209 eV Total energy + Delta-G solvation = -3756.775725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.26476 -40.72368 -38.73558 -37.22761 -34.77716 -33.29492 -31.96025 -30.25603 -29.18200 -26.90278 -26.18626 -24.96645 -23.94414 -22.20660 -20.71687 -20.02819 -19.68555 -19.21081 -18.72453 -17.17487 -16.84613 -16.35896 -16.16815 -15.71188 -15.08754 -14.64860 -14.59607 -14.53699 -14.33757 -13.88087 -13.68913 -13.27731 -12.86548 -12.76724 -12.47136 -12.22828 -12.09430 -11.87805 -11.51465 -11.13659 -10.97086 -10.90103 -10.75240 -10.57246 -10.38149 -10.18894 -10.05496 -9.94748 -9.65153 -9.47102 -8.98422 -8.90960 -8.66927 -8.39946 -7.03778 -6.20302 -3.18054 0.20249 0.84306 1.48475 2.08048 3.26868 3.35881 3.45608 3.50394 3.67535 4.10063 4.36652 4.56516 4.83682 5.05373 5.07177 5.10716 5.13149 5.26845 5.47403 5.57613 5.59200 5.61822 5.70015 5.81221 5.87979 5.91751 5.99240 6.06688 6.14663 6.20360 6.28724 6.36177 6.44734 6.57440 6.72526 6.86845 6.99341 7.02106 7.72543 7.75770 8.36762 8.38675 8.93872 9.73194 10.34192 11.12090 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.005617 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.606200 B = 4983.783228 C = 6605.084335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.017 4.017 3 Si 1.050 2.950 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.349 4.349 8 H 0.069 0.931 9 N -0.582 5.582 10 C 0.143 3.857 11 C -0.126 4.126 12 C 0.131 3.869 13 N -0.685 5.685 14 C 0.589 3.411 15 O -0.532 6.532 16 C -0.252 4.252 17 C -0.044 4.044 18 C -0.183 4.183 19 C -0.031 4.031 20 F -0.101 7.101 21 S 0.241 5.759 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.113 4.113 25 C 0.160 3.840 26 H 0.023 0.977 27 H 0.269 0.731 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -8.354 -9.663 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.220 4.220 3 Si 0.880 3.120 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.476 4.476 8 H 0.087 0.913 9 N -0.306 5.306 10 C 0.018 3.982 11 C -0.165 4.165 12 C 0.043 3.957 13 N -0.336 5.336 14 C 0.374 3.626 15 O -0.412 6.412 16 C -0.374 4.374 17 C -0.076 4.076 18 C -0.216 4.216 19 C -0.169 4.169 20 F -0.080 7.080 21 S 0.506 5.494 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.152 4.152 25 C 0.050 3.950 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.060 -6.399 -8.566 14.015 hybrid contribution 0.416 -1.650 -1.281 2.130 sum 9.477 -8.049 -9.847 15.860 Atomic orbital electron populations 1.70806 1.07026 1.30161 1.46039 1.25589 0.96067 1.00891 0.99491 0.83736 0.75293 0.76712 0.76287 1.21146 1.21959 1.22047 1.19604 1.04423 0.89921 1.33653 0.91279 1.43708 1.39002 1.01744 1.46165 1.22156 0.92022 0.92925 0.91063 1.22577 0.94620 0.98035 1.01264 1.21581 0.89166 0.91958 0.92975 1.45661 1.39554 1.41521 1.06831 1.16745 0.82108 0.82145 0.81588 1.90805 1.41096 1.32872 1.76413 1.24731 1.06837 1.06626 0.99172 1.20430 0.96673 0.98766 0.91775 1.20254 0.99623 0.99199 1.02488 1.22051 0.96260 0.98531 1.00102 1.91529 1.58439 1.67913 1.90146 1.83882 1.29112 1.33377 1.03039 1.21871 0.99092 0.95023 0.98996 1.22615 0.98568 0.96667 0.97672 1.21590 0.97722 0.95015 1.00852 1.20790 0.94935 0.88023 0.91208 0.95997 0.91924 0.93904 0.94412 0.90913 0.90870 0.76240 0.81986 0.82661 0.90882 0.90993 0.91740 0.92069 0.91842 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.00 55.49 0.72 -25.56 16 2 C -0.02 -0.46 5.11 -17.43 -0.09 -0.55 16 3 Si 1.05 24.36 30.03 -169.99 -5.11 19.25 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.35 -9.16 9.98 -15.06 -0.15 -9.31 16 8 H 0.07 1.81 8.02 -52.49 -0.42 1.38 16 9 N -0.58 -13.60 3.02 -162.61 -0.49 -14.09 16 10 C 0.14 3.21 5.79 -0.71 0.00 3.21 16 11 C -0.13 -2.35 6.22 -25.39 -0.16 -2.51 16 12 C 0.13 2.27 0.41 -130.71 -0.05 2.21 16 13 N -0.69 -11.53 4.36 -47.97 -0.21 -11.74 16 14 C 0.59 9.67 7.08 -13.00 -0.09 9.58 16 15 O -0.53 -9.79 14.99 5.16 0.08 -9.72 16 16 C -0.25 -3.51 6.44 -36.87 -0.24 -3.74 16 17 C -0.04 -0.52 10.00 -40.45 -0.40 -0.93 16 18 C -0.18 -1.95 10.16 -41.33 -0.42 -2.37 16 19 C -0.03 -0.37 8.10 29.31 0.24 -0.14 16 20 F -0.10 -1.23 17.32 2.25 0.04 -1.19 16 21 S 0.24 3.03 22.15 -107.50 -2.38 0.65 16 22 C -0.11 -1.66 6.05 -26.19 -0.16 -1.82 16 23 C -0.12 -1.58 6.90 -24.22 -0.17 -1.75 16 24 C -0.11 -1.84 6.37 -26.90 -0.17 -2.01 16 25 C 0.16 3.11 2.65 -68.71 -0.18 2.93 16 26 H 0.02 0.46 7.99 -51.93 -0.41 0.05 16 27 H 0.27 7.90 6.25 -40.82 -0.26 7.65 16 28 H 0.04 1.05 6.28 -51.93 -0.33 0.72 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.37 7.17 -51.93 -0.37 1.00 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.40 6.83 6.86 -40.82 -0.28 6.55 16 33 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.11 6.83 -51.93 -0.35 0.76 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.03 7.31 -51.93 -0.38 0.65 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -29.68 339.15 -9.27 -38.95 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.98 Total: 5.52 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.05 Total: -7.20 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.02 Total: -51.38 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.11 Total: 19.25 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.38 Total: 0.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.68 -9.27 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992520439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.137 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds