Wall clock time and date at job start Tue Mar 31 2020 13:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00329 * 2 1 4 4 H 1.48505 * 109.47111 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47345 * 119.99860 * 3 2 1 6 6 H 1.48500 * 109.47229 * 239.99845 * 3 2 1 7 7 C 1.38820 * 119.99731 * 180.27176 * 2 1 3 8 8 H 1.08000 * 119.99858 * 214.10742 * 7 2 1 9 9 N 1.36931 * 119.99638 * 34.10442 * 7 2 1 10 10 C 1.49295 * 127.10595 * 13.38805 * 9 7 2 11 11 C 1.56322 * 106.46008 * 171.20427 * 10 9 7 12 12 C 1.52131 * 100.91703 * 336.92291 * 11 10 9 13 13 N 1.46494 * 111.08744 * 285.82354 * 12 11 10 14 14 C 1.34783 * 120.00088 * 288.30149 * 13 12 11 15 15 O 1.21735 * 119.99679 * 359.97438 * 14 13 12 16 16 C 1.46338 * 119.99879 * 179.97438 * 14 13 12 17 17 C 1.36740 * 125.43421 * 179.97438 * 16 14 13 18 18 C 1.37338 * 113.33349 * 180.02562 * 17 16 14 19 19 C 1.34210 * 115.04318 * 359.97438 * 18 17 16 20 20 F 1.35106 * 124.53793 * 180.02562 * 19 18 17 21 21 S 1.70618 * 110.92060 * 359.72796 * 19 18 17 22 22 C 1.51223 * 122.55011 * 151.14006 * 12 11 10 23 23 C 1.55701 * 104.60733 * 218.56230 * 22 12 11 24 24 C 1.55030 * 105.77231 * 7.12828 * 23 22 12 25 25 C 1.42711 * 127.09919 * 193.70182 * 9 7 2 26 26 H 1.08991 * 108.17309 * 103.46549 * 25 9 7 27 27 H 0.96997 * 120.00154 * 185.50573 * 1 2 3 28 28 H 1.08995 * 110.04783 * 290.59251 * 10 9 7 29 29 H 1.09004 * 110.04696 * 52.07173 * 10 9 7 30 30 H 1.08998 * 111.29295 * 218.92080 * 11 10 9 31 31 H 1.09000 * 110.95444 * 94.78325 * 11 10 9 32 32 H 0.97008 * 120.00117 * 108.30267 * 13 12 11 33 33 H 1.07996 * 123.33360 * 0.02562 * 17 16 14 34 34 H 1.07999 * 122.48248 * 179.97438 * 18 17 16 35 35 H 1.09006 * 110.40925 * 337.34232 * 22 12 11 36 36 H 1.08994 * 110.41205 * 99.66353 * 22 12 11 37 37 H 1.09001 * 110.15245 * 126.36745 * 23 22 12 38 38 H 1.08992 * 110.16068 * 248.05744 * 23 22 12 39 39 H 1.08997 * 110.45034 * 266.30861 * 24 23 22 40 40 H 1.09003 * 110.92769 * 142.93453 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6962 -1.2125 7 6 2.0102 -1.2022 -0.0057 8 1 2.9509 -1.2852 0.5184 9 7 1.5021 -2.2829 -0.6758 10 6 0.3849 -2.2847 -1.6661 11 6 0.3530 -3.7154 -2.2952 12 6 1.7815 -4.1734 -2.0421 13 7 2.7179 -3.5048 -2.9489 14 6 2.7390 -3.8311 -4.2564 15 8 1.9802 -4.6818 -4.6837 16 6 3.6739 -3.1628 -5.1623 17 6 3.7900 -3.4063 -6.5028 18 6 4.7492 -2.6369 -7.1144 19 6 5.3997 -1.7886 -6.3029 20 9 6.3765 -0.9446 -6.7013 21 16 4.8219 -1.9130 -4.7023 22 6 2.1488 -5.6287 -1.8577 23 6 3.2364 -5.6211 -0.7435 24 6 3.2968 -4.1618 -0.2236 25 6 1.9270 -3.6409 -0.5670 26 1 1.1978 -4.1777 0.0397 27 1 -0.4850 -0.8361 0.0806 28 1 -0.5594 -2.0734 -1.1646 29 1 0.5715 -1.5414 -2.4413 30 1 0.1368 -3.6737 -3.3627 31 1 -0.3623 -4.3536 -1.7763 32 1 3.3227 -2.8272 -2.6083 33 1 3.1870 -4.1318 -7.0286 34 1 4.9644 -2.7091 -8.1703 35 1 1.2794 -6.2024 -1.5363 36 1 2.5530 -6.0389 -2.7831 37 1 2.9537 -6.2989 0.0619 38 1 4.2011 -5.9130 -1.1583 39 1 4.0702 -3.6019 -0.7493 40 1 3.4643 -4.1388 0.8533 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992520439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:56 Heat of formation + Delta-G solvation = -19.564371 kcal Electronic energy + Delta-G solvation = -26033.731273 eV Core-core repulsion = 22276.229209 eV Total energy + Delta-G solvation = -3757.502065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.21417 -42.13950 -39.98896 -38.31209 -36.46599 -34.63948 -33.74852 -31.81995 -30.32657 -28.44692 -27.60562 -26.04513 -25.79741 -23.37013 -22.24938 -21.45451 -20.86956 -20.51477 -19.94376 -19.00276 -17.95285 -17.56216 -17.11982 -17.03066 -16.40415 -16.32659 -15.86795 -15.65262 -15.54796 -15.49175 -15.28976 -14.69262 -14.30899 -14.10890 -13.64198 -13.49368 -13.43659 -13.17277 -12.98057 -12.52522 -12.51189 -12.29786 -12.17341 -12.08992 -11.98632 -11.85969 -11.63674 -11.42273 -11.30540 -10.94267 -10.38796 -10.18145 -9.88138 -9.80304 -9.01037 -8.33315 -5.26634 -0.79521 -0.12620 0.51328 1.13226 1.58107 1.64914 1.82879 2.02883 2.12879 2.63076 2.93801 3.14120 3.17605 3.59680 3.73424 3.78350 3.96825 4.12204 4.14030 4.23042 4.25361 4.30742 4.38950 4.52958 4.68838 4.70887 4.82803 4.86459 4.89299 4.90881 5.00746 5.04185 5.12263 5.13500 5.16607 5.32427 5.44117 5.60847 5.75768 6.28393 6.44289 6.88248 7.07671 7.70315 8.37944 8.99093 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.005617 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.606200 B = 4983.783228 C = 6605.084335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.072 4.072 3 Si 1.098 2.902 4 H -0.299 1.299 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.342 4.342 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.151 3.849 11 C -0.115 4.115 12 C 0.140 3.860 13 N -0.689 5.689 14 C 0.591 3.409 15 O -0.556 6.556 16 C -0.280 4.280 17 C -0.028 4.028 18 C -0.172 4.172 19 C -0.031 4.031 20 F -0.101 7.101 21 S 0.231 5.769 22 C -0.106 4.106 23 C -0.104 4.104 24 C -0.110 4.110 25 C 0.145 3.855 26 H 0.014 0.986 27 H 0.254 0.746 28 H 0.016 0.984 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.400 0.600 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 -9.572 -10.832 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.270 4.270 3 Si 0.924 3.076 4 H -0.225 1.225 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.470 4.470 8 H 0.088 0.912 9 N -0.319 5.319 10 C 0.026 3.974 11 C -0.154 4.154 12 C 0.053 3.947 13 N -0.339 5.339 14 C 0.378 3.622 15 O -0.437 6.437 16 C -0.401 4.401 17 C -0.061 4.061 18 C -0.204 4.204 19 C -0.169 4.169 20 F -0.080 7.080 21 S 0.497 5.503 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.149 4.149 25 C 0.037 3.963 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.235 0.765 33 H 0.193 0.807 34 H 0.205 0.795 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.194 -7.649 -9.730 16.687 hybrid contribution -0.223 -1.293 -0.960 1.625 sum 10.971 -8.941 -10.690 17.736 Atomic orbital electron populations 1.70924 1.08068 1.29209 1.49599 1.26827 0.96123 1.04161 0.99863 0.83083 0.74268 0.72750 0.77531 1.22511 1.19892 1.20495 1.19843 1.03818 0.90777 1.32513 0.91231 1.43822 1.39184 1.03002 1.45932 1.21982 0.90646 0.94711 0.90100 1.22476 0.96441 0.95711 1.00758 1.21538 0.88252 0.93517 0.91409 1.45686 1.39399 1.41605 1.07222 1.16982 0.82051 0.81755 0.81421 1.90783 1.42234 1.34012 1.76702 1.24520 1.07831 1.08066 0.99645 1.20695 0.96195 0.98256 0.90955 1.20513 0.98311 0.97795 1.03797 1.22142 0.96277 0.98679 0.99780 1.91534 1.58479 1.67990 1.90037 1.83888 1.29123 1.33295 1.04020 1.21876 1.00085 0.92925 0.99594 1.22558 0.99074 0.94890 0.97628 1.21612 0.95488 0.96687 1.01072 1.21024 0.96690 0.85729 0.92888 0.96889 0.93563 0.96646 0.97172 0.91139 0.89434 0.76451 0.80667 0.79543 0.89729 0.91059 0.89723 0.90134 0.91909 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.00 21.65 0.28 -56.38 16 2 C -0.07 -4.03 5.11 84.86 0.43 -3.60 16 3 Si 1.10 49.72 30.03 68.60 2.06 51.78 16 4 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.34 -18.16 9.98 84.04 0.84 -17.33 16 8 H 0.07 3.63 8.02 -2.91 -0.02 3.61 16 9 N -0.60 -28.39 3.02 -668.39 -2.02 -30.41 16 10 C 0.15 7.05 5.79 86.99 0.50 7.56 16 11 C -0.12 -4.32 6.22 31.46 0.20 -4.13 16 12 C 0.14 4.76 0.41 4.33 0.00 4.76 16 13 N -0.69 -22.79 4.36 -423.87 -1.85 -24.64 16 14 C 0.59 18.90 7.08 86.35 0.61 19.51 16 15 O -0.56 -19.88 14.99 -4.46 -0.07 -19.95 16 16 C -0.28 -7.40 6.44 24.03 0.15 -7.24 16 17 C -0.03 -0.60 10.00 21.71 0.22 -0.38 16 18 C -0.17 -3.13 10.16 21.14 0.21 -2.91 16 19 C -0.03 -0.66 8.10 66.90 0.54 -0.12 16 20 F -0.10 -2.23 17.32 44.97 0.78 -1.45 16 21 S 0.23 5.56 22.15 -56.49 -1.25 4.31 16 22 C -0.11 -2.94 6.05 30.95 0.19 -2.75 16 23 C -0.10 -2.49 6.90 32.22 0.22 -2.27 16 24 C -0.11 -3.40 6.37 30.49 0.19 -3.20 16 25 C 0.15 5.59 2.65 46.47 0.12 5.71 16 26 H 0.01 0.55 7.99 -2.39 -0.02 0.54 16 27 H 0.25 15.70 6.25 -92.71 -0.58 15.12 16 28 H 0.02 0.81 6.28 -2.39 -0.02 0.80 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 2.68 7.17 -2.39 -0.02 2.66 16 31 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.40 13.48 6.86 -92.70 -0.64 12.85 16 33 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.07 2.03 6.83 -2.39 -0.02 2.02 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.94 7.31 -2.39 -0.02 1.92 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.35 339.15 3.01 -62.34 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.63 Total: 20.80 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.44 Total: -6.39 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.58 Total: -111.43 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.07 Total: -19.95 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.06 Total: 51.78 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.25 Total: 4.31 kcal Total: -65.35 3.01 -62.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992520439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.771 kcal (2) G-P(sol) polarization free energy of solvation -65.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds